PSIBLAST alignment of GI: 254780143 and protein with PDB id: 1hqm
>gi|13096178|pdb|1HQM|C Chain C, Crystal Structure Of Thermus Aquaticus Core Rna Polymerase- Includes Complete Structure With Side-Chains (Except For Disordered Regions)-Further Refined From Original Deposition-Contains Additional Sequence Information Length = 1119
Score = 255 bits (651), Expect = 4e-65, Method: Composition-based stats.
Identities = 84/217 (38%), Positives = 123/217 (56%), Gaps = 20/217 (9%)
Query: 15 KFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFS---GA 71
K FG+ E+I +P L E+Q SY L ++ P++R N G+QAAFK FPI G
Sbjct: 4 KRFGRIREVIPLPPLTEIQVESYKKALQADVPPEKRENVGIQAAFKETFPIEEGDKGKGG 63
Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIY 131
+L+F+ Y P F D+C +DLTY PL L+LI D IKE ++
Sbjct: 64 LVLDFLEYRIGDPPFSQDECREKDLTYQAPLYARLQLIHKD---------TGLIKEDEVF 114
Query: 132 MGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPD--QG 189
+G LPLMT+DG+F+I G R++VSQ+HRSPG++F D R Y IIP +G
Sbjct: 115 LGHLPLMTEDGSFIINGADRVIVSQIHRSPGVYFTPDPARPGR-----YIASIIPLPKRG 169
Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE 226
W+D+E ++ ++ ++++ +RK P+ L LG D E
Sbjct: 170 PWIDLEVEASGVVTMKVN-KRKFPLVLLLRVLGYDQE 205