PSIBLAST alignment of GI: 254780143 and protein with PDB id: 1i3q

gi|14278325|pdb|1I3Q|B Chain B, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution Length = 1224
>gi|14278336|pdb|1I50|B Chain B, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution Length = 1224
>gi|14278366|pdb|1I6H|B Chain B, Rna Polymerase Ii Elongation Complex Length = 1224
>gi|20150714|pdb|1K83|B Chain B, Crystal Structure Of Yeast Rna Polymerase Ii Complexed With The Inhibitor Alpha Amanitin Length = 1224
 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 175/980 (17%), Positives = 317/980 (32%), Gaps = 171/980 (17%)

Query: 432  RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSI--KER 489
            +   +  +I  L+     +   DD D+ G +R+   G +L   ++    ++ + I    +
Sbjct: 374  KAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQ 433

Query: 490  ISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQ-------------LSQLEEHVNSLSRIT 536
             +  +      +  INAK + S +     +               +SQ+       S ++
Sbjct: 434  RTVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLS 493

Query: 537  HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596
            H RR +      + R     + R +H TH+G +CPAET EG   GLV +L+  + ++   
Sbjct: 494  HLRRTNT----PIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGT 549

Query: 597  FIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSF----TEELVFCRCAGE 652
                    + +  +     Y+   +  +      N              E L   R  G+
Sbjct: 550  DPMPIITFLSEWGMEPLEDYV-PHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGD 608

Query: 653  EILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVP--LLKAEAPF 710
                     D  +   K          P    +D   +       R+     L+  E   
Sbjct: 609  INPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIAKLMATEYQD 668

Query: 711  VGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIV---IRSVEGDLDPSTSGVDIYRLMKF 767
            +  G E V   +  + +     G+VE +DA       I     DL+P+ +  +    +  
Sbjct: 669  IEGGFEDVEEYTWSSLL---NEGLVEYIDAEEEESILIAMQPEDLEPAEANEENDLDVDP 725

Query: 768  QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827
             +            ++V             PS  LG  A       + +P+  +N     
Sbjct: 726  AK-----------RIRVSHHATTFTHCEIHPSMILGVAA-------SIIPFPDHNQSPRN 767

Query: 828  LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887
                 M  + +   + +  + V                               +  +   
Sbjct: 768  TYQSAMGKQAMG--VFLTNYNVRM---------------------------DTMANILYY 798

Query: 888  VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947
                      +       +   +  + AI      +  D+ +   S +   +    +F R
Sbjct: 799  PQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLF-RSLFFR 857

Query: 948  HGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTV 1007
              +D+ ++      E  E   R           +       I  G           K+T 
Sbjct: 858  SYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIGKTTP 917

Query: 1008 LSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMP 1067
            +S D      R+ +         ++     +  Q                          
Sbjct: 918  ISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQ--------------------VLVTTN 957

Query: 1068 PGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGV 1127
               L+ VKV V   +  Q GDK A RHG KG +      EDMPF  +G   D+++NP  +
Sbjct: 958  QDGLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAI 1017

Query: 1128 PSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISD 1187
            PSRM V  + E  L       G +                                    
Sbjct: 1018 PSRMTVAHLIECLLSKVAALSGNEGD---------------------------------- 1043

Query: 1188 YDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDR 1247
                               ++P F     E I+ +LR       G  ++Y+G TG+    
Sbjct: 1044 -------------------ASP-FTDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMA 1083

Query: 1248 PVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGA 1307
             +  G  Y  +L HMV DK++AR+ G   ++T+QP+ G+S  GG R GEME  C+ A+GA
Sbjct: 1084 QIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGA 1143

Query: 1308 AYVLQEMLTIKSD----DVVGRTRVYESIVA----------GND---TFETGTPESFNVL 1350
            A  L+E L   SD     + G   +   I             ++    ++   P +  +L
Sbjct: 1144 ASFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAAKLL 1203

Query: 1351 VKEMQALGLSIDLENSRTKN 1370
             +E+ A+ ++  L   R+++
Sbjct: 1204 FQELMAMNITPRLYTDRSRD 1223