PSIBLAST alignment of GI: 254780143 and protein with PDB id: 1i3q
gi|14278325|pdb|1I3Q|B Chain B, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution Length = 1224
>gi|14278336|pdb|1I50|B Chain B, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution Length = 1224
>gi|14278366|pdb|1I6H|B Chain B, Rna Polymerase Ii Elongation Complex Length = 1224
>gi|20150714|pdb|1K83|B Chain B, Crystal Structure Of Yeast Rna Polymerase Ii Complexed With The Inhibitor Alpha Amanitin Length = 1224
Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats.
Identities = 175/980 (17%), Positives = 317/980 (32%), Gaps = 171/980 (17%)
Query: 432 RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSI--KER 489
+ + +I L+ + DD D+ G +R+ G +L ++ ++ + I +
Sbjct: 374 KAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQ 433
Query: 490 ISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQ-------------LSQLEEHVNSLSRIT 536
+ + + INAK + S + + +SQ+ S ++
Sbjct: 434 RTVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLS 493
Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596
H RR + + R + R +H TH+G +CPAET EG GLV +L+ + ++
Sbjct: 494 HLRRTNT----PIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGT 549
Query: 597 FIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSF----TEELVFCRCAGE 652
+ + + Y+ + + N E L R G+
Sbjct: 550 DPMPIITFLSEWGMEPLEDYV-PHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGD 608
Query: 653 EILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVP--LLKAEAPF 710
D + K P +D + R+ L+ E
Sbjct: 609 INPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIAKLMATEYQD 668
Query: 711 VGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIV---IRSVEGDLDPSTSGVDIYRLMKF 767
+ G E V + + + G+VE +DA I DL+P+ + + +
Sbjct: 669 IEGGFEDVEEYTWSSLL---NEGLVEYIDAEEEESILIAMQPEDLEPAEANEENDLDVDP 725
Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827
+ ++V PS LG A + +P+ +N
Sbjct: 726 AK-----------RIRVSHHATTFTHCEIHPSMILGVAA-------SIIPFPDHNQSPRN 767
Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887
M + + + + + V + +
Sbjct: 768 TYQSAMGKQAMG--VFLTNYNVRM---------------------------DTMANILYY 798
Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947
+ + + + AI + D+ + S + + +F R
Sbjct: 799 PQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLF-RSLFFR 857
Query: 948 HGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTV 1007
+D+ ++ E E R + I G K+T
Sbjct: 858 SYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIGKTTP 917
Query: 1008 LSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMP 1067
+S D R+ + ++ + Q
Sbjct: 918 ISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQ--------------------VLVTTN 957
Query: 1068 PGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGV 1127
L+ VKV V + Q GDK A RHG KG + EDMPF +G D+++NP +
Sbjct: 958 QDGLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAI 1017
Query: 1128 PSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISD 1187
PSRM V + E L G +
Sbjct: 1018 PSRMTVAHLIECLLSKVAALSGNEGD---------------------------------- 1043
Query: 1188 YDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDR 1247
++P F E I+ +LR G ++Y+G TG+
Sbjct: 1044 -------------------ASP-FTDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMA 1083
Query: 1248 PVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGA 1307
+ G Y +L HMV DK++AR+ G ++T+QP+ G+S GG R GEME C+ A+GA
Sbjct: 1084 QIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGA 1143
Query: 1308 AYVLQEMLTIKSD----DVVGRTRVYESIVA----------GND---TFETGTPESFNVL 1350
A L+E L SD + G + I ++ ++ P + +L
Sbjct: 1144 ASFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAAKLL 1203
Query: 1351 VKEMQALGLSIDLENSRTKN 1370
+E+ A+ ++ L R+++
Sbjct: 1204 FQELMAMNITPRLYTDRSRD 1223