PSIBLAST alignment of GI: 254780143 and protein with PDB id: 1iw7
gi|21730339|pdb|1IW7|C Chain C, Crystal Structure Of The Rna Polymerase Holoenzyme From Thermus Thermophilus At 2.6a Resolution Length = 1119
>gi|21730345|pdb|1IW7|M Chain M, Crystal Structure Of The Rna Polymerase Holoenzyme From Thermus Thermophilus At 2.6a Resolution Length = 1119
Score = 493 bits (1268), Expect = e-136, Method: Composition-based stats.
Identities = 190/510 (37%), Positives = 256/510 (50%), Gaps = 43/510 (8%)
Query: 876 IDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTS------L 929
+D+ + VG V GD+L + + + +L AI + D L
Sbjct: 637 LDQRPRVVVGQRVRKGDLLADGPASEN-GFLALGQNVLVAIMPFDGYNFEDAIVISEELL 695
Query: 930 RVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEI 989
+ S + I R ER E RD D+E ++ + +I
Sbjct: 696 KRDFYTSIHIERYEIEARDTKLGPERITRDIPHLSEAALRDLDEE-GVVRIGAEVKPGDI 754
Query: 990 LCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSIL 1049
L G+ + G L + E R
Sbjct: 755 LVGRTSFKGESEPTPEERLLRSIFGEKARD-------------------VKDTSLRVPPG 795
Query: 1050 EDRFKNKIEKIQWGDD---MPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPC 1106
E + +++ GD + PGV VV+V+VA KR +Q GDK+A RHGNKG+V++ILP
Sbjct: 796 EGGIVVRTVRLRRGDPGVELKPGVREVVRVYVAQKRKLQVGDKLANRHGNKGVVAKILPV 855
Query: 1107 EDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDIS 1166
EDMP L DGTPVD++LNPLGVPSRMN+GQI ETHLG A LG++ S I D +I
Sbjct: 856 EDMPHLPDGTPVDVILNPLGVPSRMNLGQILETHLGLAGYFLGQRYISPIFDGAKEPEIK 915
Query: 1167 PLRSFLEKVIGTGSHTEKIS-DYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRM 1225
L + +V E D + VLR AE+ P TP EE + +
Sbjct: 916 ELLAQAFEVYFGKRKGEGFGVDKREVEVLRRAEKLGLVTPGKTP------EEQLKELFLQ 969
Query: 1226 ADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGG 1285
G+ +LYDG TGEP + P+ VG ++++KL HMV DK++ARSTG YSL+TQQPLGG
Sbjct: 970 ------GKVVLYDGRTGEPIEGPIVVGQMFIMKLYHMVEDKMHARSTGPYSLITQQPLGG 1023
Query: 1286 KSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPE 1345
K+ GGQR GEMEVW ++AYGAA+ LQEMLT+KSDD+ GR YE+I+ G D E PE
Sbjct: 1024 KAQFGGQRFGEMEVWALEAYGAAHTLQEMLTLKSDDIEGRNAAYEAIIKGEDVPEPSVPE 1083
Query: 1346 SFNVLVKEMQALGLSIDLENSRTKNSAKME 1375
SF VLVKE+QAL L + + + E
Sbjct: 1084 SFRVLVKELQALALDVQTLDEKDNPVDIFE 1113