PSIBLAST alignment of GI: 254780143 and protein with PDB id: 1iw7

gi|21730339|pdb|1IW7|C Chain C, Crystal Structure Of The Rna Polymerase Holoenzyme From Thermus Thermophilus At 2.6a Resolution Length = 1119
>gi|21730345|pdb|1IW7|M Chain M, Crystal Structure Of The Rna Polymerase Holoenzyme From Thermus Thermophilus At 2.6a Resolution Length = 1119
 Score =  493 bits (1268), Expect = e-136,   Method: Composition-based stats.
 Identities = 190/510 (37%), Positives = 256/510 (50%), Gaps = 43/510 (8%)

Query: 876  IDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTS------L 929
            +D+   + VG  V  GD+L      +    +   + +L AI      +  D        L
Sbjct: 637  LDQRPRVVVGQRVRKGDLLADGPASEN-GFLALGQNVLVAIMPFDGYNFEDAIVISEELL 695

Query: 930  RVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEI 989
            +     S  +    I  R      ER         E   RD D+E  ++      +  +I
Sbjct: 696  KRDFYTSIHIERYEIEARDTKLGPERITRDIPHLSEAALRDLDEE-GVVRIGAEVKPGDI 754

Query: 990  LCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSIL 1049
            L G+ +  G         L   +  E  R                               
Sbjct: 755  LVGRTSFKGESEPTPEERLLRSIFGEKARD-------------------VKDTSLRVPPG 795

Query: 1050 EDRFKNKIEKIQWGDD---MPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPC 1106
            E     +  +++ GD    + PGV  VV+V+VA KR +Q GDK+A RHGNKG+V++ILP 
Sbjct: 796  EGGIVVRTVRLRRGDPGVELKPGVREVVRVYVAQKRKLQVGDKLANRHGNKGVVAKILPV 855

Query: 1107 EDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDIS 1166
            EDMP L DGTPVD++LNPLGVPSRMN+GQI ETHLG A   LG++  S I D     +I 
Sbjct: 856  EDMPHLPDGTPVDVILNPLGVPSRMNLGQILETHLGLAGYFLGQRYISPIFDGAKEPEIK 915

Query: 1167 PLRSFLEKVIGTGSHTEKIS-DYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRM 1225
             L +   +V       E    D  +  VLR AE+     P  TP      EE +  +   
Sbjct: 916  ELLAQAFEVYFGKRKGEGFGVDKREVEVLRRAEKLGLVTPGKTP------EEQLKELFLQ 969

Query: 1226 ADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGG 1285
                  G+ +LYDG TGEP + P+ VG ++++KL HMV DK++ARSTG YSL+TQQPLGG
Sbjct: 970  ------GKVVLYDGRTGEPIEGPIVVGQMFIMKLYHMVEDKMHARSTGPYSLITQQPLGG 1023

Query: 1286 KSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPE 1345
            K+  GGQR GEMEVW ++AYGAA+ LQEMLT+KSDD+ GR   YE+I+ G D  E   PE
Sbjct: 1024 KAQFGGQRFGEMEVWALEAYGAAHTLQEMLTLKSDDIEGRNAAYEAIIKGEDVPEPSVPE 1083

Query: 1346 SFNVLVKEMQALGLSIDLENSRTKNSAKME 1375
            SF VLVKE+QAL L +   + +       E
Sbjct: 1084 SFRVLVKELQALALDVQTLDEKDNPVDIFE 1113