PSIBLAST alignment of GI: 254780143 and protein with PDB id: 1iw7
gi|21730339|pdb|1IW7|C Chain C, Crystal Structure Of The Rna Polymerase Holoenzyme From Thermus Thermophilus At 2.6a Resolution Length = 1119
>gi|21730345|pdb|1IW7|M Chain M, Crystal Structure Of The Rna Polymerase Holoenzyme From Thermus Thermophilus At 2.6a Resolution Length = 1119
Score = 262 bits (669), Expect = 4e-67, Method: Composition-based stats.
Identities = 106/457 (23%), Positives = 186/457 (40%), Gaps = 38/457 (8%)
Query: 15 KFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFS---GA 71
K FG+ E+I +P L E+Q SY L ++ P++R N G+QAAF+ FPI G
Sbjct: 4 KRFGRIREVIPLPPLTEIQVESYRRALQADVPPEKRENVGIQAAFRETFPIEEEDKGKGG 63
Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIY 131
+L+F+ Y P F D+C +DLTY PL L+LI D IKE ++
Sbjct: 64 LVLDFLEYRLGEPPFPQDECREKDLTYQAPLYARLQLIHKD---------TGLIKEDEVF 114
Query: 132 MGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPD--QG 189
+G +PLMT+DG+F+I G R++VSQ+HRSPG++F D R Y IIP +G
Sbjct: 115 LGHIPLMTEDGSFIINGADRVIVSQIHRSPGVYFTPDPARPGR-----YIASIIPLPKRG 169
Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTF--YPKIVYSQRGDFWCF 247
W+D+E + ++ ++++ +RK P+ L LG D E + Y ++V +
Sbjct: 170 PWIDLEVEPNGVVSMKVN-KRKFPLVLLLRVLGYDQETLARELGAYGELVQGLMDESVFA 228
Query: 248 PLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGV-KFLGITSDCLCGL 306
L+ + + V + L E G K L G
Sbjct: 229 MRPEEALIRLFTLLRPGDPPKRDKAVAYVYGLIADPRRYDLGEAGRYKAEEKLGIRLSGR 288
Query: 307 YVAEDIVNGETGEIYIEAGDVI----------DEKSLEEIFHSEIRDIPILYVDSVNNNA 356
+A E+++ + + ++ + + IR + L D
Sbjct: 289 TLARFEDGEFKDEVFLPTLRYLFALTAGVPGHEVDDIDHLGNRRIRTVGELMTDQFRVGL 348
Query: 357 YIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKM 416
V ++ + L +++ + F+ K + + + ++
Sbjct: 349 ARLARGVRERMLMGSEDSLTPAKLVNS--RPLEAAIREFFSRSQLSQFKDETNPLSSLRH 406
Query: 417 NMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTI 453
R++ P + +E ++ + G+
Sbjct: 407 KRRISALGPGG---LTRERAGFDVRDVHRTHYGRICP 440