PSIBLAST alignment of GI: 254780143 and protein with PDB id: 1l9u
>gi|21466005|pdb|1L9U|C Chain C, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A Resolution Length = 1118
>gi|21466011|pdb|1L9U|L Chain L, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A Resolution Length = 1118
Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats.
Identities = 190/509 (37%), Positives = 255/509 (50%), Gaps = 43/509 (8%)
Query: 877 DECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTS------LR 930
D+ + VG V GD+L E + + +L AI + D L+
Sbjct: 637 DQRPRVRVGQRVKKGDLLADGP-ASEEGFLALGQNVLVAIMPFDGYNFEDAIVISEELLK 695
Query: 931 VPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEIL 990
S + I R ER E RD D+E I+ + +IL
Sbjct: 696 RDFYTSIHIERYEIEARDTKLGPERITRDIPHLSEAALRDLDEE-GIVRIGAEVKPGDIL 754
Query: 991 CGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILE 1050
G+ + G + L + E R E
Sbjct: 755 VGRTSFKGEQEPSPEERLLRSIFGEKARD-------------------VKDTSLRVPPGE 795
Query: 1051 DRFKNKIEKIQWGDD---MPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCE 1107
+++ GD + PGV VV+VFVA KR +Q GDK+A RHGNKG+V++ILP E
Sbjct: 796 GGIVVGRLRLRRGDPGVELKPGVREVVRVFVAQKRKLQVGDKLANRHGNKGVVAKILPVE 855
Query: 1108 DMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISP 1167
DMP L DGTPVD++LNPLGVPSRMN+GQI ETHLG A LG++ S + D +I
Sbjct: 856 DMPHLPDGTPVDVILNPLGVPSRMNLGQILETHLGLAGYFLGQRYISPVFDGATEPEIKE 915
Query: 1168 LRSFLEKVIGTGSHTEKIS-DYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMA 1226
L + + E D + VL AE+ P +P EE + + +
Sbjct: 916 LLAEAFNLYFGKRQGEGFGVDKREKEVLARAEKLGLVSPGKSP------EEQLKELFDL- 968
Query: 1227 DLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGK 1286
G+ +LYDG TGEPF+ P+ VG ++++KL HMV DK++ARSTG YSL+TQQPLGGK
Sbjct: 969 -----GKVVLYDGRTGEPFEGPIVVGQMFIMKLYHMVEDKMHARSTGPYSLITQQPLGGK 1023
Query: 1287 SNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPES 1346
+ GGQR GEMEVW ++AYGAA+ LQEMLTIKSDD+ GR Y++I+ G D E PES
Sbjct: 1024 AQFGGQRFGEMEVWALEAYGAAHTLQEMLTIKSDDIEGRNAAYQAIIKGEDVPEPSVPES 1083
Query: 1347 FNVLVKEMQALGLSIDLENSRTKNSAKME 1375
F VLVKE+QAL L + + + E
Sbjct: 1084 FRVLVKELQALALDVQTLDEKDNPVDIFE 1112