PSIBLAST alignment of GI: 254780143 and protein with PDB id: 1l9u

>gi|21466005|pdb|1L9U|C Chain C, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A Resolution Length = 1118
>gi|21466011|pdb|1L9U|L Chain L, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A Resolution Length = 1118
 Score =  255 bits (651), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 84/217 (38%), Positives = 123/217 (56%), Gaps = 20/217 (9%)

Query: 15  KFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFS---GA 71
           K FG+  E+I +P L E+Q  SY   L  ++ P++R N G+QAAFK  FPI       G 
Sbjct: 4   KRFGRIREVIPLPPLTEIQVESYKKALQADVPPEKRENVGIQAAFKETFPIEEGDKGKGG 63

Query: 72  AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIY 131
            +L+F+ Y    P F  D+C  +DLTY  PL   L+LI  D            IKE  ++
Sbjct: 64  LVLDFLEYRIGDPPFSQDECREKDLTYQAPLYARLQLIHKD---------TGLIKEDEVF 114

Query: 132 MGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPD--QG 189
           +G LPLMT+DG+F+I G  R++VSQ+HRSPG++F  D  R        Y   IIP   +G
Sbjct: 115 LGHLPLMTEDGSFIINGADRVIVSQIHRSPGVYFTPDPARPGR-----YIASIIPLPKRG 169

Query: 190 LWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSE 226
            W+D+E ++  ++ ++++ +RK P+   L  LG D E
Sbjct: 170 PWIDLEVEASGVVTMKVN-KRKFPLVLLLRVLGYDQE 205