PSIBLAST alignment of GI: 254780143 and protein with PDB id: 1ynj

gi|62738682|pdb|1YNJ|C Chain C, Taq Rna Polymerase-Sorangicin Complex Length = 1119
>gi|62738688|pdb|1YNN|C Chain C, Taq Rna Polymerase-Rifampicin Complex Length = 1119
>gi|109157856|pdb|2GHO|C Chain C, Recombinant Thermus Aquaticus Rna Polymerase For Structural Studies Length = 1119
 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 190/509 (37%), Positives = 255/509 (50%), Gaps = 43/509 (8%)

Query: 877  DECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTS------LR 930
            D+   + VG  V  GD+L        E  +   + +L AI      +  D        L+
Sbjct: 638  DQRPRVRVGQRVKKGDLLADGP-ASEEGFLALGQNVLVAIMPFDGYNFEDAIVISEELLK 696

Query: 931  VPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILDRNIYSRLMEIL 990
                 S  +    I  R      ER         E   RD D+E  I+      +  +IL
Sbjct: 697  RDFYTSIHIERYEIEARDTKLGPERITRDIPHLSEAALRDLDEE-GIVRIGAEVKPGDIL 755

Query: 991  CGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILE 1050
             G+ +  G +       L   +  E  R                               E
Sbjct: 756  VGRTSFKGEQEPSPEERLLRSIFGEKARD-------------------VKDTSLRVPPGE 796

Query: 1051 DRFKNKIEKIQWGDD---MPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCE 1107
                    +++ GD    + PGV  VV+VFVA KR +Q GDK+A RHGNKG+V++ILP E
Sbjct: 797  GGIVVGRLRLRRGDPGVELKPGVREVVRVFVAQKRKLQVGDKLANRHGNKGVVAKILPVE 856

Query: 1108 DMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISP 1167
            DMP L DGTPVD++LNPLGVPSRMN+GQI ETHLG A   LG++  S + D     +I  
Sbjct: 857  DMPHLPDGTPVDVILNPLGVPSRMNLGQILETHLGLAGYFLGQRYISPVFDGATEPEIKE 916

Query: 1168 LRSFLEKVIGTGSHTEKIS-DYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMA 1226
            L +    +       E    D  +  VL  AE+     P  +P      EE +  +  + 
Sbjct: 917  LLAEAFNLYFGKRQGEGFGVDKREKEVLARAEKLGLVSPGKSP------EEQLKELFDL- 969

Query: 1227 DLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGK 1286
                 G+ +LYDG TGEPF+ P+ VG ++++KL HMV DK++ARSTG YSL+TQQPLGGK
Sbjct: 970  -----GKVVLYDGRTGEPFEGPIVVGQMFIMKLYHMVEDKMHARSTGPYSLITQQPLGGK 1024

Query: 1287 SNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPES 1346
            +  GGQR GEMEVW ++AYGAA+ LQEMLTIKSDD+ GR   Y++I+ G D  E   PES
Sbjct: 1025 AQFGGQRFGEMEVWALEAYGAAHTLQEMLTIKSDDIEGRNAAYQAIIKGEDVPEPSVPES 1084

Query: 1347 FNVLVKEMQALGLSIDLENSRTKNSAKME 1375
            F VLVKE+QAL L +   + +       E
Sbjct: 1085 FRVLVKELQALALDVQTLDEKDNPVDIFE 1113