PSIBLAST alignment of GI: 254780143 and protein with PDB id: 2pmz
gi|167744883|pdb|2PMZ|B Chain B, Archaeal Rna Polymerase From Sulfolobus Solfataricus Length = 1124
>gi|167744894|pdb|2PMZ|R Chain R, Archaeal Rna Polymerase From Sulfolobus Solfataricus Length = 1124
>gi|239782145|pdb|3HKZ|B Chain B, The X-Ray Crystal Structure Of Rna Polymerase From Archaea Length = 1124
>gi|239782158|pdb|3HKZ|J Chain J, The X-Ray Crystal Structure Of Rna Polymerase From Archaea Length = 1124
Score = 219 bits (557), Expect = 4e-54, Method: Composition-based stats.
Identities = 176/1161 (15%), Positives = 347/1161 (29%), Gaps = 234/1161 (20%)
Query: 1 MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK 60
MA + + RV + + K+ L+ SY+ F+ LQ
Sbjct: 1 MASNLTIDERWRVIEAYFKSKG------LVRQHLDSYNDFVRNK----------LQEIID 44
Query: 61 SVFPITAFSGAAMLEFVSYEFDPPK----------FDVDDCLWRDLTYAVPLKITLRLIV 110
I + P+ + R+LTYA PL +T+ +
Sbjct: 45 EQGEIPTEIPGLKVRLGKIRIGKPRVRESDRGEREISPMEARLRNLTYAAPLWLTMIPVE 104
Query: 111 FDVDEFTGAKSIKDIKEQSIYMGDLPLMTKD------------------------GTFVI 146
+++ + +Y+GDLP+M K G F++
Sbjct: 105 NNIEAEP----------EEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIV 154
Query: 147 KGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIP----DQGLWMDIEFDSKDII 202
G +R++V+Q +P D G+ + + + +II + + + IE
Sbjct: 155 NGSERVIVTQEDLAPNRVLV-DTGKTGSN--ITHTAKIISSTAGYR-VPVTIERLKDGTF 210
Query: 203 HVRIDRRR-KVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVS 261
HV K+P + ALG+ ++ IVY+ D L + ++
Sbjct: 211 HVSFPAVPGKIPFVILMRALGILTD-------RDIVYAVSLDPEVQNELFPSLEQASSIA 263
Query: 262 SSLVDIDTGEQVIESGKKLTSGLLK---SLKEKGVKFLGITSDCLCGLYVAEDIVNGETG 318
+ +D + G+K + + K + + + LG +++ +
Sbjct: 264 NVDDALDFIGSRVAIGQKRENRIEKAQQIIDKYFLPHLGTSAEDRKKKAYYLAYAISKVI 323
Query: 319 EIYIEAGDVIDEKS-----LEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDA 373
E+Y+ + D+ L + + V + Y K A
Sbjct: 324 ELYLGRREPDDKDHYANKRLRLAGDLFASLFRVAFKAFVKDLTYQLEKSKVRGRKLALKA 383
Query: 374 LLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRK 433
L+ RP D+ T + ++ + + R L+ + + +
Sbjct: 384 LV------RP-DIVTERIRHALATGNWVGGRTGVSQLLDRTNWLSMLSHLRRV-ISSLAR 435
Query: 434 EDIIAIIKILVDLRNGK-GTIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISS 492
+ L + G+ + + + V+++ M + + +E+++ E
Sbjct: 436 GQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALMAQIAVGINERIVEKTLYEMGVV 495
Query: 493 VDIDSV-MPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVAR 551
+ + + + + + +L + L+ RR V
Sbjct: 496 PVEEVIRRVTEGGEDQNEYLKWSKVILNGRLIGYYQDGGELANKIRERRRKGEISDEVNV 555
Query: 552 ARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVT 611
+ C + I + + + +E+ D
Sbjct: 556 GHIVTD----FINEVHVNCDSGRVRRPLIIVSNG-NPLVTIEDIEKLESGAITFDDLVRQ 610
Query: 612 NDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQV 671
+ YL A EEEN Y+A + L D ++ +
Sbjct: 611 GKIEYLDAEEEENAYVALEPNDLTPDH-----------------------THLEIWSPAI 647
Query: 672 VSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKR 731
+ I AS+IP+ E++ S R M +QA+ L A
Sbjct: 648 LGITASIIPYPEHNQSPRNTYQSAMAKQALGLYAANYQL--------------------- 686
Query: 732 AGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRN 791
+ + + Y QRPLV + R
Sbjct: 687 --------------------RTDTRAHLLHYP--------------QRPLV----QTRAL 708
Query: 792 DIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMA 851
DII G N ++A M + GYN EDS++++ V ++ S +
Sbjct: 709 DIIGYTN------RPAGNNAILAVMSFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTEE 762
Query: 852 RDTKLGPEEITRDIP-----NVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPM 906
G E+ +E + +++ G++ EV GD+L+GK++P
Sbjct: 763 VKYPGGQEDKIVMPEAGVRGYKGKEYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQE 822
Query: 907 TPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIEL 966
E +A RDTS+ G G V + + E +
Sbjct: 823 FKELSPEQAK--------RDTSIVTRHGEMGIV--------------DLVLITETAEGNK 860
Query: 967 LARDKDDEQVI--LDRNIYSRLM-EILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQ 1023
L + + + I + SR + + G + V+ +++ +
Sbjct: 861 LVKVRVRDLRIPTIGDKFASRHGQKGVIGMLIPQVDMPYTVKGVVPDIILNPHALPSRMT 920
Query: 1024 FAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRP 1083
E + +L + + + +I +P
Sbjct: 921 LGQIMEGIAGKYAALSGNIVDATPFYKTPIEQLQNEILRYGYLPDATE------------ 968
Query: 1084 IQSGDKMAGRHGNKGIVSRIL 1104
D GR G K I SRI
Sbjct: 969 -VVYD---GRTGQK-IKSRIY 984