PSIBLAST alignment of GI: 254780143 and protein with PDB id: 2waq
>gi|237823479|pdb|2WAQ|B Chain B, The Complete Structure Of The Archaeal 13-Subunit Dna- Directed Rna Polymerase Length = 1131
>gi|237823491|pdb|2WB1|B Chain B, The Complete Structure Of The Archaeal 13-Subunit Dna- Directed Rna Polymerase Length = 1131
Score = 323 bits (829), Expect = 9e-86, Method: Composition-based stats.
Identities = 113/587 (19%), Positives = 192/587 (32%), Gaps = 99/587 (16%)
Query: 800 TDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPE 859
+ D N VA P + I + + I E R+T
Sbjct: 616 IEYLDAEEEENAYVALEPSDLTPEHTHLEIWSPAILGITASIIPYPEHNQSPRNTYQSAM 675
Query: 860 EITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGE 919
+ L+ + + + G + + A+
Sbjct: 676 AKQALGLYAANYQLR---TDTRAHLLHYPQRPLVQTRALDIIGYTNRPAGNNAILAVISF 732
Query: 920 KAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVILD 979
++ D+ + S V + F R S E + DK
Sbjct: 733 TGYNMEDSIIMNRSSVERGMYRSTFF---------RLYSTEEVKYPGGQEDKIVMPEPGV 783
Query: 980 RNIYSR-LMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESL 1038
R + +L VS K VL + ++ + + + K ++ +
Sbjct: 784 RGYKGKEYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQEFKELSPEQAKRDTSI--V 841
Query: 1039 KVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKG 1098
E L + ++VKV V R GDK A RHG KG
Sbjct: 842 TRHGEMGIVDLVLITE------------TAEGNKLVKVRVRDLRIPSIGDKFASRHGQKG 889
Query: 1099 IVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLIND 1158
++ ++P DMP+ G D++LNP +PSRM +GQI E G
Sbjct: 890 VIGMLIPQVDMPYTVKGVVPDVILNPHALPSRMTLGQIMEGIAGKYAA------------ 937
Query: 1159 YKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEA 1218
+ +TP F E
Sbjct: 938 -----------------------------------------LSGNIVDATP-FYKTPIEQ 955
Query: 1219 INSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLV 1278
+ + + + YDG TG+ + G +Y KL+HMV+DK++AR+ G ++
Sbjct: 956 LQNEILKYGYLPDATEVTYDGRTGQKIKSRIYFGVVYYQKLHHMVADKIHARARGPVQIL 1015
Query: 1279 TQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD-------DVVG------- 1324
T+QP G++ GG R GEME C+ +G A +L++ L SD D G
Sbjct: 1016 TRQPTEGRAREGGLRFGEMERDCLIGFGTAMLLKDRLLDNSDRTTIYVCDQCGYIGWYDK 1075
Query: 1325 -RTRVYESIVAGN--DTFETGTPESFNVLVKEMQALGLSIDLENSRT 1368
+ + Y + G+ + F +F +L++E+ ++ +S L
Sbjct: 1076 NKNK-YVCPIHGDKSNLFPVTVSYAFKLLIQELMSMIISPRLILEDR 1121