PSIBLAST alignment of GI: 254780143 and protein with PDB id: 2waq
>gi|237823479|pdb|2WAQ|B Chain B, The Complete Structure Of The Archaeal 13-Subunit Dna- Directed Rna Polymerase Length = 1131
>gi|237823491|pdb|2WB1|B Chain B, The Complete Structure Of The Archaeal 13-Subunit Dna- Directed Rna Polymerase Length = 1131
Score = 211 bits (538), Expect = 6e-52, Method: Composition-based stats.
Identities = 171/1133 (15%), Positives = 338/1133 (29%), Gaps = 228/1133 (20%)
Query: 29 LIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLEFVSYEFDPPK--- 85
L+ SY+ F+ LQ I + P+
Sbjct: 26 LVRQHLDSYNDFVRNK----------LQEIIDEQGEIPTEIPGLKVRLGKIRIGKPRVRE 75
Query: 86 -------FDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLM 138
+ R+LTYA PL +T+ + +++ + +Y+GDLP+M
Sbjct: 76 SDRGEREISPMEARLRNLTYAAPLWLTMIPVENNIEAEP----------EEVYIGDLPIM 125
Query: 139 TKD------------------------GTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASL 174
K G F++ G +R++V+Q +P D G+
Sbjct: 126 LKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVNGSERVIVTQEDLAPNRVLV-DTGKTGS 184
Query: 175 SGKLLYACRIIP----DQGLWMDIEFDSKDIIHVRIDRRR-KVPVTSFLMALGMDSEEIL 229
+ + + +II + + + IE HV K+P + ALG+ ++
Sbjct: 185 N--ITHTAKIISSTAGYR-VPVTIERLKDGTFHVSFPAVPGKIPFVILMRALGILTD--- 238
Query: 230 STFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLK--- 286
IVY+ D L + +++ +D + G+K + + K
Sbjct: 239 ----RDIVYAVSLDPEIQNELFPSLEQASSIANVDDALDFIGSRVAIGQKRENRIEKAQQ 294
Query: 287 SLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKS-----LEEIFHSEI 341
+ + + LG ++D + E+Y+ + D+ L
Sbjct: 295 IIDKYFLPHLGTSADDRRKKAYYLAYAISKVIELYLGRREPDDKDHYANKRLRLAGDLFA 354
Query: 342 RDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFF 401
+ + V + Y K AL+ RP D+ T + ++ +
Sbjct: 355 SLFRVAFKAFVKDLTYQLEKSKVRGRKLALKALV------RP-DIVTERIRHALATGNWV 407
Query: 402 DSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGK-GTIDDIDNLG 460
+ R L+ + + + + L + G+ + +
Sbjct: 408 GGRTGVSQLLDRTNWLSMLSHLRRV-ISSLARGQPNFEARDLHGTQWGRMCPFETPEGPN 466
Query: 461 NRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSV-MPQDLINAKPVVSAVCEFFCS 519
+ V+++ M + + +E+++ E + + + + + +
Sbjct: 467 SGLVKNLALMAQIAVGINEKIVEKTLYEMGVVPVEEVIRRVTEGGEDQNEYLKWSKVILN 526
Query: 520 SQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHN 579
+L L++ RR V + C +
Sbjct: 527 GRLVGYYRDGEELAKKIRERRRKGEISDEVNVGHIVTD----FINEVHVNCDSGRVRRPL 582
Query: 580 IGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGS 639
I + + R + +++ D + YL A EEEN Y+A S L +
Sbjct: 583 IIVSNGNPLVTREDIE-KLDSGSITFDDLVRQGKIEYLDAEEEENAYVALEPSDLTPEH- 640
Query: 640 FTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQ 699
++ ++ I AS+IP+ E++ S R M +Q
Sbjct: 641 ----------------------THLEIWSPAILGITASIIPYPEHNQSPRNTYQSAMAKQ 678
Query: 700 AVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGV 759
A+ L A + + +
Sbjct: 679 ALGLYAANYQL-----------------------------------------RTDTRAHL 697
Query: 760 DIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWH 819
Y QRPLV + R DII G N ++A + +
Sbjct: 698 LHYP--------------QRPLV----QTRALDIIGYTN------RPAGNNAILAVISFT 733
Query: 820 GYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIP-----NVSEEGLK 874
GYN EDS++++ V ++ S + G E+ +E +
Sbjct: 734 GYNMEDSIIMNRSSVERGMYRSTFFRLYSTEEVKYPGGQEDKIVMPEPGVRGYKGKEYYR 793
Query: 875 NIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSG 934
+++ G++ EV GD+L+GK++P E +A RDTS+ G
Sbjct: 794 LLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQEFKELSPEQAK--------RDTSIVTRHG 845
Query: 935 VSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVI--LDRNIYSRLM-EILC 991
G V + + E + L + + + I + SR + +
Sbjct: 846 EMGIV--------------DLVLITETAEGNKLVKVRVRDLRIPSIGDKFASRHGQKGVI 891
Query: 992 GQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILED 1051
G + V+ +++ + E + +L + +
Sbjct: 892 GMLIPQVDMPYTVKGVVPDVILNPHALPSRMTLGQIMEGIAGKYAALSGNIVDATPFYKT 951
Query: 1052 RFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRIL 1104
+ +I +P D GR G K I SRI
Sbjct: 952 PIEQLQNEILKYGYLPDATEVT-------------YD---GRTGQK-IKSRIY 987