PSIBLAST alignment of GI: 254780143 and protein with PDB id: 2waq

>gi|237823479|pdb|2WAQ|B Chain B, The Complete Structure Of The Archaeal 13-Subunit Dna- Directed Rna Polymerase Length = 1131
>gi|237823491|pdb|2WB1|B Chain B, The Complete Structure Of The Archaeal 13-Subunit Dna- Directed Rna Polymerase Length = 1131
 Score =  211 bits (538), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 171/1133 (15%), Positives = 338/1133 (29%), Gaps = 228/1133 (20%)

Query: 29   LIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLEFVSYEFDPPK--- 85
            L+     SY+ F+             LQ        I        +         P+   
Sbjct: 26   LVRQHLDSYNDFVRNK----------LQEIIDEQGEIPTEIPGLKVRLGKIRIGKPRVRE 75

Query: 86   -------FDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLM 138
                       +   R+LTYA PL +T+  +  +++             + +Y+GDLP+M
Sbjct: 76   SDRGEREISPMEARLRNLTYAAPLWLTMIPVENNIEAEP----------EEVYIGDLPIM 125

Query: 139  TKD------------------------GTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASL 174
             K                         G F++ G +R++V+Q   +P      D G+   
Sbjct: 126  LKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVNGSERVIVTQEDLAPNRVLV-DTGKTGS 184

Query: 175  SGKLLYACRIIP----DQGLWMDIEFDSKDIIHVRIDRRR-KVPVTSFLMALGMDSEEIL 229
            +  + +  +II      + + + IE       HV       K+P    + ALG+ ++   
Sbjct: 185  N--ITHTAKIISSTAGYR-VPVTIERLKDGTFHVSFPAVPGKIPFVILMRALGILTD--- 238

Query: 230  STFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLK--- 286
                  IVY+   D          L   + +++    +D     +  G+K  + + K   
Sbjct: 239  ----RDIVYAVSLDPEIQNELFPSLEQASSIANVDDALDFIGSRVAIGQKRENRIEKAQQ 294

Query: 287  SLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKS-----LEEIFHSEI 341
             + +  +  LG ++D              +  E+Y+   +  D+       L        
Sbjct: 295  IIDKYFLPHLGTSADDRRKKAYYLAYAISKVIELYLGRREPDDKDHYANKRLRLAGDLFA 354

Query: 342  RDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFF 401
                + +   V +  Y          K    AL+      RP D+ T  +  ++    + 
Sbjct: 355  SLFRVAFKAFVKDLTYQLEKSKVRGRKLALKALV------RP-DIVTERIRHALATGNWV 407

Query: 402  DSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGK-GTIDDIDNLG 460
                     + R      L+      +  + +       + L   + G+    +  +   
Sbjct: 408  GGRTGVSQLLDRTNWLSMLSHLRRV-ISSLARGQPNFEARDLHGTQWGRMCPFETPEGPN 466

Query: 461  NRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSV-MPQDLINAKPVVSAVCEFFCS 519
            +  V+++  M +    +    +E+++ E       + +    +    +       +   +
Sbjct: 467  SGLVKNLALMAQIAVGINEKIVEKTLYEMGVVPVEEVIRRVTEGGEDQNEYLKWSKVILN 526

Query: 520  SQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHN 579
             +L         L++    RR        V       +            C +       
Sbjct: 527  GRLVGYYRDGEELAKKIRERRRKGEISDEVNVGHIVTD----FINEVHVNCDSGRVRRPL 582

Query: 580  IGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGS 639
            I + +      R +    +++      D      + YL A EEEN Y+A   S L  +  
Sbjct: 583  IIVSNGNPLVTREDIE-KLDSGSITFDDLVRQGKIEYLDAEEEENAYVALEPSDLTPEH- 640

Query: 640  FTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQ 699
                                    ++     ++ I AS+IP+ E++ S R      M +Q
Sbjct: 641  ----------------------THLEIWSPAILGITASIIPYPEHNQSPRNTYQSAMAKQ 678

Query: 700  AVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGV 759
            A+ L  A                                                + + +
Sbjct: 679  ALGLYAANYQL-----------------------------------------RTDTRAHL 697

Query: 760  DIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWH 819
              Y               QRPLV    + R  DII             G N ++A + + 
Sbjct: 698  LHYP--------------QRPLV----QTRALDIIGYTN------RPAGNNAILAVISFT 733

Query: 820  GYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIP-----NVSEEGLK 874
            GYN EDS++++   V   ++ S     +         G E+              +E  +
Sbjct: 734  GYNMEDSIIMNRSSVERGMYRSTFFRLYSTEEVKYPGGQEDKIVMPEPGVRGYKGKEYYR 793

Query: 875  NIDECGIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSG 934
             +++ G++    EV  GD+L+GK++P        E    +A         RDTS+    G
Sbjct: 794  LLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQEFKELSPEQAK--------RDTSIVTRHG 845

Query: 935  VSGTVVDVRIFNRHGIDKNERSISVEREQIELLARDKDDEQVI--LDRNIYSRLM-EILC 991
              G V              +  +  E  +   L + +  +  I  +     SR   + + 
Sbjct: 846  EMGIV--------------DLVLITETAEGNKLVKVRVRDLRIPSIGDKFASRHGQKGVI 891

Query: 992  GQNAVSGPKGFKKSTVLSSDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILED 1051
            G         +    V+   +++ +            E +     +L      +    + 
Sbjct: 892  GMLIPQVDMPYTVKGVVPDVILNPHALPSRMTLGQIMEGIAGKYAALSGNIVDATPFYKT 951

Query: 1052 RFKNKIEKIQWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRIL 1104
              +    +I     +P                    D   GR G K I SRI 
Sbjct: 952  PIEQLQNEILKYGYLPDATEVT-------------YD---GRTGQK-IKSRIY 987