PSIBLAST alignment of GI: 254780143 and protein with PDB id: 3lti
>gi|309319933|pdb|3LTI|A Chain A, Crystal Structure Of The Escherichia Coli Rna Polymerase Beta Subunit Beta2-Betai4 Domains Length = 296
Score = 288 bits (738), Expect = 3e-75, Method: Composition-based stats.
Identities = 110/295 (37%), Positives = 162/295 (54%), Gaps = 3/295 (1%)
Query: 160 SPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLM 219
SPG+ FD DKG+ SGK+LY RIIP +G W+D EFD KD + VRIDRRRK+P T L
Sbjct: 5 SPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILR 64
Query: 220 ALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKK 279
AL +E+IL F+ K+++ R + L L G S + G +E G++
Sbjct: 65 ALNYTTEQILDLFFEKVIFEIRDNKLQXELVPERL-RGETASFDIE--ANGXVYVEXGRR 121
Query: 280 LTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHS 339
+T+ ++ L++ VK + + + + G VA D ++ TGE+ A + L + S
Sbjct: 122 ITARHIRQLEKDDVKLIEVPVEYIAGXVVAXDYIDESTGELICAANXELSLDLLAXLSQS 181
Query: 340 EIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFL 399
+ I L+ + +++ YI TL D DR AL++IYR RPG+ T AES+F L
Sbjct: 182 GHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRXXRPGEPPTREAAESLFENL 241
Query: 400 FFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTID 454
FF D+YDLS VGR N L + + + +DII + L+D+RNG G +D
Sbjct: 242 FFSEDRYDLSAVGRXXFNRSLLREEIEGSGILSXDDIIDVXXXLIDIRNGXGEVD 296