PSIBLAST alignment of GI: 254780143 and protein with PDB id: 3lti

>gi|309319933|pdb|3LTI|A Chain A, Crystal Structure Of The Escherichia Coli Rna Polymerase Beta Subunit Beta2-Betai4 Domains Length = 296
 Score =  288 bits (738), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 110/295 (37%), Positives = 162/295 (54%), Gaps = 3/295 (1%)

Query: 160 SPGIHFDHDKGRASLSGKLLYACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLM 219
           SPG+ FD DKG+   SGK+LY  RIIP +G W+D EFD KD + VRIDRRRK+P T  L 
Sbjct: 5   SPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILR 64

Query: 220 ALGMDSEEILSTFYPKIVYSQRGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKK 279
           AL   +E+IL  F+ K+++  R +     L    L  G   S  +     G   +E G++
Sbjct: 65  ALNYTTEQILDLFFEKVIFEIRDNKLQXELVPERL-RGETASFDIE--ANGXVYVEXGRR 121

Query: 280 LTSGLLKSLKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHS 339
           +T+  ++ L++  VK + +  + + G  VA D ++  TGE+   A   +    L  +  S
Sbjct: 122 ITARHIRQLEKDDVKLIEVPVEYIAGXVVAXDYIDESTGELICAANXELSLDLLAXLSQS 181

Query: 340 EIRDIPILYVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFL 399
             + I  L+ + +++  YI  TL  D   DR  AL++IYR  RPG+  T   AES+F  L
Sbjct: 182 GHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRXXRPGEPPTREAAESLFENL 241

Query: 400 FFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTID 454
           FF  D+YDLS VGR   N  L  +  +    +  +DII +   L+D+RNG G +D
Sbjct: 242 FFSEDRYDLSAVGRXXFNRSLLREEIEGSGILSXDDIIDVXXXLIDIRNGXGEVD 296