RPSBLAST alignment for GI: 254780143 and conserved domain: TIGR03670

>gnl|CDD|132709 TIGR03670, rpoB_arch, DNA-directed RNA polymerase subunit B. This model represents the archaeal version of DNA-directed RNA polymerase subunit B (rpoB) and is observed in all archaeal genomes. Length = 599

 Score =  180 bits (459), Expect = 2e-45
 Identities = 95/309 (30%), Positives = 140/309 (45%), Gaps = 70/309 (22%)

Query: 1072 RVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRM 1131
            ++VKV V   R  + GDK A RHG KG++  I+P EDMPF +DG   D+++NP  +PSRM
Sbjct: 340  KLVKVRVRDLRIPELGDKFASRHGQKGVIGMIVPQEDMPFTEDGIVPDLIINPHAIPSRM 399

Query: 1132 NVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDD 1191
             VGQ+ E         +  K+ +L                                    
Sbjct: 400  TVGQLLEM--------IAGKVAAL------------------------------------ 415

Query: 1192 SVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTV 1251
                       G  V    F+G  EE +   L        G+ ++YDG+TGE  +  + +
Sbjct: 416  ----------EGRRVDGTPFEGEPEEELRKELLKLGFKPDGKEVMYDGITGEKLEAEIFI 465

Query: 1252 GYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVL 1311
            G IY  KL+HMV+DK++ARS G   ++T+QP  G++  GG R GEME   +  +GAA +L
Sbjct: 466  GVIYYQKLHHMVADKIHARSRGPVQVLTRQPTEGRAREGGLRFGEMERDVLIGHGAAMLL 525

Query: 1312 QEMLTIKSDDVV--------------GRTRVYESIVAGNDT--FETGTPESFNVLVKEMQ 1355
            +E L  +SD  V               R       V G            +F +L+ E++
Sbjct: 526  KERLLDESDKYVVYVCENCGHIAWEDKRKGTAYCPVCGETGDISPVEMSYAFKLLLDELK 585

Query: 1356 ALGLSIDLE 1364
            +LG+S  LE
Sbjct: 586  SLGISPRLE 594