RPSBLAST alignment for GI: 254780143 and conserved domain: TIGR02013

>gnl|CDD|162660 TIGR02013, rpoB, DNA-directed RNA polymerase, beta subunit. This model describes orthologs of the beta subunit of Bacterial RNA polymerase. The core enzyme consists of two alpha chains, one beta chain, and one beta' subunit. Length = 1065

 Score =  444 bits (1143), Expect = e-124
 Identities = 181/301 (60%), Positives = 211/301 (70%), Gaps = 51/301 (16%)

Query: 1063 GDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVL 1122
            GD++PPGV ++VKV++A KR IQ GDKMAGRHGNKG+VS+ILP EDMPFL+DGTPVDIVL
Sbjct: 816  GDELPPGVNKLVKVYIAQKRKIQVGDKMAGRHGNKGVVSKILPIEDMPFLEDGTPVDIVL 875

Query: 1123 NPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHT 1182
            NPLGVPSRMN+GQI ETHLGWA   LG+K                               
Sbjct: 876  NPLGVPSRMNIGQILETHLGWAGKRLGRK------------------------------- 904

Query: 1183 EKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTG 1242
                                GVP++TPVFDGA EE I   L  A L   G+  LYDG TG
Sbjct: 905  --------------------GVPIATPVFDGASEEEIKEYLEKAGLPRDGKVRLYDGRTG 944

Query: 1243 EPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCI 1302
            E FDRPVTVGY+YMLKL+H+V DK++ARSTG YSLVTQQPLGGK+  GGQR GEMEVW +
Sbjct: 945  EQFDRPVTVGYMYMLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWAL 1004

Query: 1303 QAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSID 1362
            +AYGAAY LQEMLT+KSDDVVGRT+ YE+IV G +  E G PESFNVL+KE+Q+LGL I+
Sbjct: 1005 EAYGAAYTLQEMLTVKSDDVVGRTKAYEAIVKGENVPEPGIPESFNVLIKELQSLGLDIE 1064

Query: 1363 L 1363
            L
Sbjct: 1065 L 1065