RPSBLAST alignment for GI: 254780143 and conserved domain: TIGR02013

>gnl|CDD|162660 TIGR02013, rpoB, DNA-directed RNA polymerase, beta subunit. This model describes orthologs of the beta subunit of Bacterial RNA polymerase. The core enzyme consists of two alpha chains, one beta chain, and one beta' subunit. Length = 1065

 Score =  282 bits (724), Expect = 3e-76
 Identities = 106/218 (48%), Positives = 151/218 (69%), Gaps = 7/218 (3%)

Query: 12  RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71
           R+R  FGK PE++++P+L+E+Q  SYD FL  +  P++R  EGL+  FKS+FPI  ++G 
Sbjct: 3   RIRIDFGKIPEVLEVPNLLEIQLDSYDWFLQQDTPPEKRKEEGLEEVFKSIFPIEDYTGN 62

Query: 72  AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIY 131
             LE++SY    PK+ V++C  R LTY+ PLK+ LRLI  + D        K+IKEQ +Y
Sbjct: 63  IELEYLSYRLGEPKYSVEECKERGLTYSAPLKVKLRLINKEEDG------TKEIKEQDVY 116

Query: 132 MGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGLW 191
           MGD+PLMT  GTF+I G +R+VVSQLHRSPG+ F  +K     SGK+L++ RIIP +G W
Sbjct: 117 MGDIPLMTDRGTFIINGAERVVVSQLHRSPGVFFSSEKDTHK-SGKVLFSARIIPYRGSW 175

Query: 192 MDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEIL 229
           ++ E D KD+++VRIDR+RK+P T  L ALG   + ++
Sbjct: 176 LEFETDKKDVLYVRIDRKRKLPATVLLRALGYTIDTLI 213