RPSBLAST alignment for GI: 254780143 and conserved domain: CHL00001

>gnl|CDD|176946 CHL00001, rpoB, RNA polymerase beta subunit. Length = 1070
 Score =  653 bits (1687), Expect = 0.0
 Identities = 256/633 (40%), Positives = 383/633 (60%), Gaps = 27/633 (4%)

Query: 339 SEIRDIPILYVDSVNNNAYIRNTLVTDKNKD---RKDALLDIYR-VMRPGDVSTFSVAES 394
             +R+I    +D+V       + L   + K    +++A+L+ Y+     G    FS  ES
Sbjct: 189 LNLREI----LDNVCYPEIFLSFLNDKEKKKIGSKENAILEFYQQFACVGGDPVFS--ES 242

Query: 395 MFNFL---FFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKG 451
           +   L   FF   + +L  +GR  MN +LNLD P++   +  +D++A    L+ ++ G G
Sbjct: 243 LCKELQKKFFQQ-RCELGRIGRRNMNRKLNLDIPENNTFLLPQDVLAAADYLIGMKFGMG 301

Query: 452 TIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVM--PQDLINAKPV 509
           T+DDID+L N+R+RSV ++L++Q+ L L R+E +++  I       ++  PQ+L+ + P+
Sbjct: 302 TLDDIDHLKNKRIRSVADLLQDQFGLALNRLENAVRGTICGAIRRKLIPTPQNLVTSTPL 361

Query: 510 VSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRI 569
            +    FF S  LSQ  +  N L+ I H R+LS+LG GG+    A   +RD+HP+HYGRI
Sbjct: 362 TTTYESFFGSHPLSQFLDQTNPLTEIVHGRKLSSLGPGGLTGRTASFRVRDIHPSHYGRI 421

Query: 570 CPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQ 629
           CP +TSEG N GL+ SL   AR+  +G +E+P+ ++ +      +VYLS  E+E   IA 
Sbjct: 422 CPIDTSEGINAGLIGSLAIHARIGHWGSLESPFYEISERSKEERMVYLSPSEDEYYMIAA 481

Query: 630 ANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNR 689
            NS     G   E++V  R   E + +  E+I      P Q  SI ASLIPFLE++D+NR
Sbjct: 482 GNSLALNQGIQEEQVVPARYRQEFLTIAWEQIHLRSIFPFQYFSIGASLIPFLEHNDANR 541

Query: 690 VLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVE 749
            LMG NMQRQAVPL ++E   VGTG+E  VA  SG   +A+  G +   D  +I++ S  
Sbjct: 542 ALMGSNMQRQAVPLSRSEKCIVGTGLERQVALDSGVVAIAEHEGKIIYTDTDKIIL-SGN 600

Query: 750 GDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGR 809
           GD            L+ +QRSN+NTC++Q+P V+ G  V++  I+ADG +T  G+LALG+
Sbjct: 601 GD-------TLSIPLVMYQRSNKNTCMHQKPQVRRGKCVKKGQILADGAATVGGELALGK 653

Query: 810 NMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVS 869
           N+LVA+MPW GYNFED++LISER+V ED++TS HI ++E+    T  GPE IT++IP++ 
Sbjct: 654 NVLVAYMPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSQGPERITKEIPHLE 713

Query: 870 EEGLKNIDECGIICVGAEVNPGDILVGKITPK--GESPMTPEEKLLRAIFGEKAVDVRDT 927
              L+N+D+ GI+ +G+ V  GDILVGK+TP+   ES   PE +LLRAIFG +    ++T
Sbjct: 714 AHLLRNLDKNGIVMLGSWVETGDILVGKLTPQEAEESSYAPEGRLLRAIFGIQVSTSKET 773

Query: 928 SLRVPSGVSGTVVDVR-IFNRHGIDKNERSISV 959
            L++P G  G V+DVR I  + G   N  +I V
Sbjct: 774 CLKLPIGGRGRVIDVRWIQKKGGSSYNPETIHV 806