RPSBLAST alignment for GI: 254780143 and conserved domain: CHL00001
>gnl|CDD|176946 CHL00001, rpoB, RNA polymerase beta subunit. Length = 1070
Score = 653 bits (1687), Expect = 0.0
Identities = 256/633 (40%), Positives = 383/633 (60%), Gaps = 27/633 (4%)
Query: 339 SEIRDIPILYVDSVNNNAYIRNTLVTDKNKD---RKDALLDIYR-VMRPGDVSTFSVAES 394
+R+I +D+V + L + K +++A+L+ Y+ G FS ES
Sbjct: 189 LNLREI----LDNVCYPEIFLSFLNDKEKKKIGSKENAILEFYQQFACVGGDPVFS--ES 242
Query: 395 MFNFL---FFDSDKYDLSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKG 451
+ L FF + +L +GR MN +LNLD P++ + +D++A L+ ++ G G
Sbjct: 243 LCKELQKKFFQQ-RCELGRIGRRNMNRKLNLDIPENNTFLLPQDVLAAADYLIGMKFGMG 301
Query: 452 TIDDIDNLGNRRVRSVGEMLKNQYRLGLLRMERSIKERISSVDIDSVM--PQDLINAKPV 509
T+DDID+L N+R+RSV ++L++Q+ L L R+E +++ I ++ PQ+L+ + P+
Sbjct: 302 TLDDIDHLKNKRIRSVADLLQDQFGLALNRLENAVRGTICGAIRRKLIPTPQNLVTSTPL 361
Query: 510 VSAVCEFFCSSQLSQLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRI 569
+ FF S LSQ + N L+ I H R+LS+LG GG+ A +RD+HP+HYGRI
Sbjct: 362 TTTYESFFGSHPLSQFLDQTNPLTEIVHGRKLSSLGPGGLTGRTASFRVRDIHPSHYGRI 421
Query: 570 CPAETSEGHNIGLVSSLTSFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQ 629
CP +TSEG N GL+ SL AR+ +G +E+P+ ++ + +VYLS E+E IA
Sbjct: 422 CPIDTSEGINAGLIGSLAIHARIGHWGSLESPFYEISERSKEERMVYLSPSEDEYYMIAA 481
Query: 630 ANSSLDEDGSFTEELVFCRCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNR 689
NS G E++V R E + + E+I P Q SI ASLIPFLE++D+NR
Sbjct: 482 GNSLALNQGIQEEQVVPARYRQEFLTIAWEQIHLRSIFPFQYFSIGASLIPFLEHNDANR 541
Query: 690 VLMGCNMQRQAVPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVE 749
LMG NMQRQAVPL ++E VGTG+E VA SG +A+ G + D +I++ S
Sbjct: 542 ALMGSNMQRQAVPLSRSEKCIVGTGLERQVALDSGVVAIAEHEGKIIYTDTDKIIL-SGN 600
Query: 750 GDLDPSTSGVDIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGR 809
GD L+ +QRSN+NTC++Q+P V+ G V++ I+ADG +T G+LALG+
Sbjct: 601 GD-------TLSIPLVMYQRSNKNTCMHQKPQVRRGKCVKKGQILADGAATVGGELALGK 653
Query: 810 NMLVAFMPWHGYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVS 869
N+LVA+MPW GYNFED++LISER+V ED++TS HI ++E+ T GPE IT++IP++
Sbjct: 654 NVLVAYMPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSQGPERITKEIPHLE 713
Query: 870 EEGLKNIDECGIICVGAEVNPGDILVGKITPK--GESPMTPEEKLLRAIFGEKAVDVRDT 927
L+N+D+ GI+ +G+ V GDILVGK+TP+ ES PE +LLRAIFG + ++T
Sbjct: 714 AHLLRNLDKNGIVMLGSWVETGDILVGKLTPQEAEESSYAPEGRLLRAIFGIQVSTSKET 773
Query: 928 SLRVPSGVSGTVVDVR-IFNRHGIDKNERSISV 959
L++P G G V+DVR I + G N +I V
Sbjct: 774 CLKLPIGGRGRVIDVRWIQKKGGSSYNPETIHV 806