RPSBLAST alignment for GI: 254780143 and conserved domain: CHL00207

>gnl|CDD|177098 CHL00207, rpoB, RNA polymerase beta subunit; Provisional. Length = 1077
 Score =  663 bits (1713), Expect = 0.0
 Identities = 307/600 (51%), Positives = 413/600 (68%), Gaps = 12/600 (2%)

Query: 353 NNNAYIRNTLVTDKNKD---RKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLS 409
             + +++       N +    ++ LL+IY+ + P + +T + A       FFD   YDL 
Sbjct: 194 TKSEFLKKLKPILLNSNSYTNEEILLEIYKNLSPIEPATVNDANQNLFSRFFDPKNYDLG 253

Query: 410 TVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGE 469
            VGR K+N +LNL+ P+ VR++  EDI++II  L++L+  KG  DDID+L NRRVRSVGE
Sbjct: 254 KVGRYKINNKLNLNIPERVRNLTYEDILSIIDKLINLKINKGNFDDIDHLKNRRVRSVGE 313

Query: 470 MLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHV 529
           +L+NQ+R+GL R+ER ++ R++  DIDS+   +LIN KP+++ + EFF SSQLSQ  +  
Sbjct: 314 LLQNQFRIGLKRLERILRNRMTICDIDSLSKFNLINPKPLIALIREFFGSSQLSQYMDQT 373

Query: 530 NSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSF 589
           N LS +TH RR+S LG GG+ + R    +RD+HP+HYGRICP ET EG N GL+ SL + 
Sbjct: 374 NPLSELTHKRRISILGPGGLDKDRISFAVRDIHPSHYGRICPIETPEGPNCGLIGSLATN 433

Query: 590 ARVNAYGFIETPYRKVCDGKV--TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFC 647
           AR+N +GFIETP+ KV +GKV    + +YL+A  E+   IA  + +L+++  F + ++  
Sbjct: 434 ARINKFGFIETPFYKVINGKVKKFGNPIYLTADSEDLYRIAPNDINLNKNNYFKKNIIPV 493

Query: 648 RCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAE 707
           R   E   V   K+DFI  SP QV SIA SLIPFLE++D+NR LMG NMQRQAVPLL  E
Sbjct: 494 RYKQEFKTVNPSKVDFIAISPIQVFSIAESLIPFLEHNDANRALMGSNMQRQAVPLLYPE 553

Query: 708 APFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKF 767
            P VGTG E  +A  SG  I++   GIV  V A +I+I+               Y L K+
Sbjct: 554 KPIVGTGYEKQIALDSGMTIISLTEGIVVSVSAYKIIIQDDNNR-------YIHYYLQKY 606

Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827
           QRSNQNTC+N RP+V VG+++    I+ADG   D  +LALG+N+LVA+MPW GYNFED++
Sbjct: 607 QRSNQNTCINYRPIVWVGEKINIGQILADGSDIDNSELALGQNVLVAYMPWEGYNFEDAI 666

Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887
           LI++R+V ED+FTSIHIE++E+  R TKLG EEITR+IPNVSE  LKN+DE GII +G++
Sbjct: 667 LINKRLVYEDLFTSIHIEKYEIELRQTKLGSEEITRNIPNVSEYSLKNLDENGIISIGSK 726

Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947
           V  GDILVGKITPKGES   PE KLLRAIFGEKA DV+DTSLR+P+G  G V+ V IF+R
Sbjct: 727 VLAGDILVGKITPKGESDQLPEGKLLRAIFGEKAKDVKDTSLRMPNGGYGRVIKVEIFSR 786