RPSBLAST alignment for GI: 254780143 and conserved domain: CHL00207
>gnl|CDD|177098 CHL00207, rpoB, RNA polymerase beta subunit; Provisional. Length = 1077
Score = 663 bits (1713), Expect = 0.0
Identities = 307/600 (51%), Positives = 413/600 (68%), Gaps = 12/600 (2%)
Query: 353 NNNAYIRNTLVTDKNKD---RKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLS 409
+ +++ N + ++ LL+IY+ + P + +T + A FFD YDL
Sbjct: 194 TKSEFLKKLKPILLNSNSYTNEEILLEIYKNLSPIEPATVNDANQNLFSRFFDPKNYDLG 253
Query: 410 TVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGE 469
VGR K+N +LNL+ P+ VR++ EDI++II L++L+ KG DDID+L NRRVRSVGE
Sbjct: 254 KVGRYKINNKLNLNIPERVRNLTYEDILSIIDKLINLKINKGNFDDIDHLKNRRVRSVGE 313
Query: 470 MLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHV 529
+L+NQ+R+GL R+ER ++ R++ DIDS+ +LIN KP+++ + EFF SSQLSQ +
Sbjct: 314 LLQNQFRIGLKRLERILRNRMTICDIDSLSKFNLINPKPLIALIREFFGSSQLSQYMDQT 373
Query: 530 NSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSF 589
N LS +TH RR+S LG GG+ + R +RD+HP+HYGRICP ET EG N GL+ SL +
Sbjct: 374 NPLSELTHKRRISILGPGGLDKDRISFAVRDIHPSHYGRICPIETPEGPNCGLIGSLATN 433
Query: 590 ARVNAYGFIETPYRKVCDGKV--TNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFC 647
AR+N +GFIETP+ KV +GKV + +YL+A E+ IA + +L+++ F + ++
Sbjct: 434 ARINKFGFIETPFYKVINGKVKKFGNPIYLTADSEDLYRIAPNDINLNKNNYFKKNIIPV 493
Query: 648 RCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAE 707
R E V K+DFI SP QV SIA SLIPFLE++D+NR LMG NMQRQAVPLL E
Sbjct: 494 RYKQEFKTVNPSKVDFIAISPIQVFSIAESLIPFLEHNDANRALMGSNMQRQAVPLLYPE 553
Query: 708 APFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKF 767
P VGTG E +A SG I++ GIV V A +I+I+ Y L K+
Sbjct: 554 KPIVGTGYEKQIALDSGMTIISLTEGIVVSVSAYKIIIQDDNNR-------YIHYYLQKY 606
Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827
QRSNQNTC+N RP+V VG+++ I+ADG D +LALG+N+LVA+MPW GYNFED++
Sbjct: 607 QRSNQNTCINYRPIVWVGEKINIGQILADGSDIDNSELALGQNVLVAYMPWEGYNFEDAI 666
Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887
LI++R+V ED+FTSIHIE++E+ R TKLG EEITR+IPNVSE LKN+DE GII +G++
Sbjct: 667 LINKRLVYEDLFTSIHIEKYEIELRQTKLGSEEITRNIPNVSEYSLKNLDENGIISIGSK 726
Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947
V GDILVGKITPKGES PE KLLRAIFGEKA DV+DTSLR+P+G G V+ V IF+R
Sbjct: 727 VLAGDILVGKITPKGESDQLPEGKLLRAIFGEKAKDVKDTSLRMPNGGYGRVIKVEIFSR 786