RPSBLAST alignment for GI: 254780143 and conserved domain: CHL00207
>gnl|CDD|177098 CHL00207, rpoB, RNA polymerase beta subunit; Provisional. Length = 1077
Score = 319 bits (820), Expect = 3e-87
Identities = 146/315 (46%), Positives = 187/315 (59%), Gaps = 39/315 (12%)
Query: 1063 GDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVL 1122
GD++ G ++VF+A R IQ GDK+AGRHGNKGI+SRILP +DMP+L DGTP DI+L
Sbjct: 789 GDELKFGYYLKIRVFIAQIRKIQVGDKLAGRHGNKGIISRILPRQDMPYLPDGTPPDIIL 848
Query: 1123 NPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHT 1182
NPLGVPSRMNVGQ+FE LG A L K+ K L D + S R + +
Sbjct: 849 NPLGVPSRMNVGQLFECLLGLAGDNLNKRFKILPFDEMYGSEYS--RILINNKL------ 900
Query: 1183 EKISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTG 1242
+ S +++ L + G+ +L DG TG
Sbjct: 901 NQASIKNNEYWL-------------------------------FNSYHPGKMVLRDGRTG 929
Query: 1243 EPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCI 1302
F PVTVG YMLKL H+V DK++AR+TG YSLVTQQPLGGK+ GGQR GEMEVW +
Sbjct: 930 YKFKNPVTVGIAYMLKLIHLVDDKIHARTTGPYSLVTQQPLGGKAQHGGQRFGEMEVWAL 989
Query: 1303 QAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSID 1362
+A+GAAY L+E+LTIKSDD+ GR +IV G + GTPESF VL++E+Q+LGL I+
Sbjct: 990 EAFGAAYTLKELLTIKSDDMQGRNETLNAIVKGQPIPKPGTPESFKVLMRELQSLGLDIE 1049
Query: 1363 LENSRTKNSAKMEEI 1377
+ EI
Sbjct: 1050 AYKIENFLEGQRLEI 1064