RPSBLAST alignment for GI: 254780143 and conserved domain: PRK00405
>gnl|CDD|179007 PRK00405, rpoB, DNA-directed RNA polymerase subunit beta; Reviewed. Length = 1112
Score = 1171 bits (3032), Expect = 0.0
Identities = 427/660 (64%), Positives = 519/660 (78%), Gaps = 23/660 (3%)
Query: 288 LKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPIL 347
KE+ K + + + L G +AEDIV+ ETGE+ EA D I E+
Sbjct: 219 EKEEFGKEIEVPVEYLLGKVLAEDIVDEETGEVLAEANDEITEE---------------- 262
Query: 348 YVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYD 407
+ YIRNTL D R++AL++IYR +RPG+ T A S+ LFFD +YD
Sbjct: 263 -----LDGPYIRNTLEKDPTSSREEALVEIYRRLRPGEPPTVEAARSLLENLFFDPKRYD 317
Query: 408 LSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSV 467
LS VGR K+N +L LD +DVR + KEDIIA IK L++LRNGKG +DDID+LGNRRVRSV
Sbjct: 318 LSKVGRYKLNKKLGLDEDEDVRVLTKEDIIATIKYLINLRNGKGEVDDIDHLGNRRVRSV 377
Query: 468 GEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEE 527
GE+L+NQ+R+GL RMER+++ER+S D+D++ PQDLINAKPVV+A+ EFF SSQLSQ +
Sbjct: 378 GELLQNQFRIGLSRMERAVRERMSLQDLDTLTPQDLINAKPVVAAIKEFFGSSQLSQFMD 437
Query: 528 HVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLT 587
N LS +TH RRLSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL
Sbjct: 438 QTNPLSELTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLA 497
Query: 588 SFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFC 647
++ARVN YGFIETPYRKV DGKVT+++VYL+A EE+N IAQAN+ LDEDG F +ELV
Sbjct: 498 TYARVNEYGFIETPYRKVVDGKVTDEIVYLTADEEDNYVIAQANAPLDEDGRFVDELVTA 557
Query: 648 RCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAE 707
R GE +LVP E++D++D SPKQVVS+AASLIPFLE+DD+NR LMG NMQRQAVPLL+ E
Sbjct: 558 RYKGEFVLVPPEEVDYMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPLLRPE 617
Query: 708 APFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKF 767
AP VGTGME VA+ SGA +VAKR G+VE VDA RIV+R E LDP GVDIY L+KF
Sbjct: 618 APLVGTGMERRVARDSGAVVVAKRDGVVEYVDASRIVVRVEE--LDPGEDGVDIYNLIKF 675
Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827
QRSNQNTC+NQRP+VKVGD V + D++ADGPSTD G+LALG+N+LVAFMPW+GYNFED++
Sbjct: 676 QRSNQNTCINQRPIVKVGDRVEKGDVLADGPSTDNGELALGQNVLVAFMPWNGYNFEDAI 735
Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887
LISER+V EDVFTSIHIEE+E+ ARDTKLGPEEITRDIPNVSEE L+N+DE GI+ +GAE
Sbjct: 736 LISERLVKEDVFTSIHIEEYEIEARDTKLGPEEITRDIPNVSEEALRNLDESGIVRIGAE 795
Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947
V PGDILVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLRVP G GTV+DV++F R
Sbjct: 796 VKPGDILVGKVTPKGETELTPEEKLLRAIFGEKARDVKDTSLRVPHGEEGTVIDVKVFTR 855