RPSBLAST alignment for GI: 254780143 and conserved domain: PRK00405

>gnl|CDD|179007 PRK00405, rpoB, DNA-directed RNA polymerase subunit beta; Reviewed. Length = 1112
 Score = 1171 bits (3032), Expect = 0.0
 Identities = 427/660 (64%), Positives = 519/660 (78%), Gaps = 23/660 (3%)

Query: 288 LKEKGVKFLGITSDCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPIL 347
            KE+  K + +  + L G  +AEDIV+ ETGE+  EA D I E+                
Sbjct: 219 EKEEFGKEIEVPVEYLLGKVLAEDIVDEETGEVLAEANDEITEE---------------- 262

Query: 348 YVDSVNNNAYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYD 407
                 +  YIRNTL  D    R++AL++IYR +RPG+  T   A S+   LFFD  +YD
Sbjct: 263 -----LDGPYIRNTLEKDPTSSREEALVEIYRRLRPGEPPTVEAARSLLENLFFDPKRYD 317

Query: 408 LSTVGRVKMNMRLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSV 467
           LS VGR K+N +L LD  +DVR + KEDIIA IK L++LRNGKG +DDID+LGNRRVRSV
Sbjct: 318 LSKVGRYKLNKKLGLDEDEDVRVLTKEDIIATIKYLINLRNGKGEVDDIDHLGNRRVRSV 377

Query: 468 GEMLKNQYRLGLLRMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEE 527
           GE+L+NQ+R+GL RMER+++ER+S  D+D++ PQDLINAKPVV+A+ EFF SSQLSQ  +
Sbjct: 378 GELLQNQFRIGLSRMERAVRERMSLQDLDTLTPQDLINAKPVVAAIKEFFGSSQLSQFMD 437

Query: 528 HVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLT 587
             N LS +TH RRLSALG GG+ R RAG E+RDVHPTHYGRICP ET EG NIGL++SL 
Sbjct: 438 QTNPLSELTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLA 497

Query: 588 SFARVNAYGFIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFC 647
           ++ARVN YGFIETPYRKV DGKVT+++VYL+A EE+N  IAQAN+ LDEDG F +ELV  
Sbjct: 498 TYARVNEYGFIETPYRKVVDGKVTDEIVYLTADEEDNYVIAQANAPLDEDGRFVDELVTA 557

Query: 648 RCAGEEILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAE 707
           R  GE +LVP E++D++D SPKQVVS+AASLIPFLE+DD+NR LMG NMQRQAVPLL+ E
Sbjct: 558 RYKGEFVLVPPEEVDYMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPLLRPE 617

Query: 708 APFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKF 767
           AP VGTGME  VA+ SGA +VAKR G+VE VDA RIV+R  E  LDP   GVDIY L+KF
Sbjct: 618 APLVGTGMERRVARDSGAVVVAKRDGVVEYVDASRIVVRVEE--LDPGEDGVDIYNLIKF 675

Query: 768 QRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSM 827
           QRSNQNTC+NQRP+VKVGD V + D++ADGPSTD G+LALG+N+LVAFMPW+GYNFED++
Sbjct: 676 QRSNQNTCINQRPIVKVGDRVEKGDVLADGPSTDNGELALGQNVLVAFMPWNGYNFEDAI 735

Query: 828 LISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAE 887
           LISER+V EDVFTSIHIEE+E+ ARDTKLGPEEITRDIPNVSEE L+N+DE GI+ +GAE
Sbjct: 736 LISERLVKEDVFTSIHIEEYEIEARDTKLGPEEITRDIPNVSEEALRNLDESGIVRIGAE 795

Query: 888 VNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNR 947
           V PGDILVGK+TPKGE+ +TPEEKLLRAIFGEKA DV+DTSLRVP G  GTV+DV++F R
Sbjct: 796 VKPGDILVGKVTPKGETELTPEEKLLRAIFGEKARDVKDTSLRVPHGEEGTVIDVKVFTR 855