RPSBLAST alignment for GI: 254780143 and conserved domain: PRK08565

>gnl|CDD|181473 PRK08565, PRK08565, DNA-directed RNA polymerase subunit B; Provisional. Length = 1103

 Score = 52.3 bits (126), Expect = 9e-07
 Identities = 45/242 (18%), Positives = 81/242 (33%), Gaps = 71/242 (29%)

Query: 29  LIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGAAMLEFVSYEFDPPKFDV 88
           L+     SY+ F+            GLQ        I        +         P+   
Sbjct: 14  LVRQHLDSYNDFI----------ERGLQEIVDEFGEIKTEIPGLKIVLGKIRVGEPEIKE 63

Query: 89  DD----------CLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKDIKEQSIYMGDLPLM 138
            D             R+LTYA PL +T+  +   ++           + + + +GDLP+M
Sbjct: 64  ADGSERPITPMEARLRNLTYAAPLYLTMIPVENGIEY----------EPEEVKIGDLPIM 113

Query: 139 TKD------------------------GTFVIKGIQRIVVSQLHRSPG-IHFDHDKGRAS 173
            K                         G F+I G +R++VSQ   +P  +  D  +  +S
Sbjct: 114 VKSKICPLSGLSPDELIEIGEDPKDPGGYFIINGSERVIVSQEDLAPNRVLVDKGEAGSS 173

Query: 174 -------LSGKLLYACRIIPDQGLWMDIEFDSKDIIHVRIDR-RRKVPVTSFLMALGMDS 225
                  +S +  Y  ++         +E      I+V       K+P    + ALG+++
Sbjct: 174 ITHTAKVISSRAGYRAQVT--------VERRKDGTIYVSFPAVPGKIPFVILMRALGLET 225

Query: 226 EE 227
           + 
Sbjct: 226 DR 227