RPSBLAST alignment for GI: 254780143 and conserved domain: PRK09603

>gnl|CDD|181983 PRK09603, PRK09603, bifunctional DNA-directed RNA polymerase subunit beta/beta'; Reviewed. Length = 2890
 Score = 1288 bits (3334), Expect = 0.0
 Identities = 602/1388 (43%), Positives = 879/1388 (63%), Gaps = 62/1388 (4%)

Query: 12   RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71
            R+R  F K P  +++P+L+ +Q+ SYD FL       +    G++  FKS+FPI      
Sbjct: 10   RLRADFTKTPTDLEVPNLLLLQRDSYDSFLY----SKDGKESGIEKVFKSIFPIQDEHNR 65

Query: 72   AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK-SIKDIKEQSI 130
              LE+   EF   K+ V + + R +TY++PLKI +RLI+++ D  +G K  IKDIKEQSI
Sbjct: 66   ITLEYAGCEFGKSKYTVREAMERGITYSIPLKIKVRLILWEKDTKSGEKNGIKDIKEQSI 125

Query: 131  YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190
            ++ ++PLMT+  +F+I G++R+VV+QLHRSPG+ F  ++   S   KL+Y  +IIPD+G 
Sbjct: 126  FIREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESSTS-LNKLIYTGQIIPDRGS 184

Query: 191  WMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLS 250
            W+  E+DSKD+++ RI++RRKVPVT    A+    ++I+  FYP +      D +  P +
Sbjct: 185  WLYFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKYLIPFA 244

Query: 251  AADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310
            + D     ++   L D   G+ ++ +GKKLTS  +K LKE  ++++    D L   ++AE
Sbjct: 245  SLD--ANQRMEFDLKDPQ-GKIILLAGKKLTSRKIKELKENHLEWVEYPMDILLNRHLAE 301

Query: 311  DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTD----- 365
             ++ G+  E+ ++    +D+  LE+I    +++  I+   ++ ++A I ++   D     
Sbjct: 302  PVMVGK--EVLLDMLTQLDKNKLEKIHDLGVQEFVIINDLALGHDASIIHSFSADSESLK 359

Query: 366  ------KNKDRKD-ALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418
                  K  D    A + I++VM+PGD  T  VA+     LFFD ++YDL+ VGR+KMN 
Sbjct: 360  LLKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMKMNH 419

Query: 419  RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478
            +L L  PD +  +  EDII  +K L+ ++N +G IDD D+LGNRR+R+VGE+L N+   G
Sbjct: 420  KLGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANELHSG 479

Query: 479  LLRMERSIKERIS--SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536
            L++M+++IK++++  S   DS+MP DL+N+K + S + EFF   QLSQ  +  N LS +T
Sbjct: 480  LVKMQKTIKDKLTTMSGAFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLSEVT 539

Query: 537  HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596
            H RRLSALG+GG+ + R G E RDVHPTHYGRICP ET EG NIGL+++L++F RVN  G
Sbjct: 540  HKRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVNDLG 599

Query: 597  FIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656
            FIE PY+KV DGKV  + +YL+A++E++  IA A++ +DE+G+   +L+  R  GE +L 
Sbjct: 600  FIEAPYKKVVDGKVVGETIYLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEIVLN 659

Query: 657  PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716
             + K+  +D S   +V +AASLIPFLE+DD+NR LMG NMQRQAVPLL+++AP VGTG+E
Sbjct: 660  EKSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRSDAPIVGTGIE 719

Query: 717  SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776
             ++A+ S  AI A RAG+VE++D+  I I           + +D Y L K  R+NQNT  
Sbjct: 720  KIIARDSWGAIKANRAGVVEKIDSKNIYILGE----GKEEAYIDAYSLQKNLRTNQNTSF 775

Query: 777  NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836
            NQ P+VKVGD+V    IIADGPS D G+LALG+N+ VAFMPW+GYNFED++++SER+  +
Sbjct: 776  NQVPIVKVGDKVEAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSERITKD 835

Query: 837  DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896
            D+FTS HI E EV AR+ K G EE T DIP+V EE L ++DE GI+ VG  V+ G ILVG
Sbjct: 836  DIFTSTHIYEKEVDARELKHGVEEFTADIPDVKEEALAHLDESGIVKVGTYVSAGMILVG 895

Query: 897  KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956
            K +PKGE   TPEE+LLRAIFG+KA  V + SL  P  + GTV+DV++F + G +K+ R 
Sbjct: 896  KTSPKGEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKDARV 955

Query: 957  ISVEREQIELLARDKDDEQVILDRNIYSRLMEILC----GQNAVSGPKGFKKSTVLS--- 1009
            +S   E+   L  +  D   +L+R    R+  +L      +      K +K+   +    
Sbjct: 956  LSAYEEEKAKLDMEHFDRLTMLNREELLRVSSLLSQAILEEPFSHNGKDYKEGDQIPKEE 1015

Query: 1010 ---------SDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKI 1060
                     + L+ +Y +            VQ + E  K  +   K +L +  + K+  +
Sbjct: 1016 IASINRFTLASLVKKYSKE-----------VQNHYEITKNNFLEQKKVLGEEHEEKLSIL 1064

Query: 1061 QWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDI 1120
            +  D +P GV++ VK+++A KR ++ GDKMAGRHGNKGIVS I+P  DMP+  DG PVDI
Sbjct: 1065 EKDDILPNGVIKKVKLYIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDI 1124

Query: 1121 VLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGS 1180
            VLNPLGVPSRMN+GQI E HLG      GK+I S++ D K       LR+ + ++    +
Sbjct: 1125 VLNPLGVPSRMNIGQILEMHLGLVGKEFGKQIASMLED-KTKDFAKELRAKMLEIANAIN 1183

Query: 1181 HTEK-----ISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235
              +      + +  D+ +L  A+ W  GV ++ PVF+G  +E    +  +A +   G+  
Sbjct: 1184 EKDPLTIHALENCSDEELLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMD 1243

Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295
            LYDG TGE     V VGY+YM+KL+H+V +KV+ARSTG YSLVT QP+GGK+  GGQR G
Sbjct: 1244 LYDGRTGEKMRERVNVGYMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFG 1303

Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355
            EMEVW ++AYGAA+ L+EMLTIKSDD+ GR   Y +I  G    E+  PE+F VL KE+Q
Sbjct: 1304 EMEVWALEAYGAAHTLKEMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTKELQ 1363

Query: 1356 ALGLSIDL 1363
            +L L I++
Sbjct: 1364 SLALDINI 1371