RPSBLAST alignment for GI: 254780143 and conserved domain: PRK09603
>gnl|CDD|181983 PRK09603, PRK09603, bifunctional DNA-directed RNA polymerase subunit beta/beta'; Reviewed. Length = 2890
Score = 1288 bits (3334), Expect = 0.0
Identities = 602/1388 (43%), Positives = 879/1388 (63%), Gaps = 62/1388 (4%)
Query: 12 RVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPITAFSGA 71
R+R F K P +++P+L+ +Q+ SYD FL + G++ FKS+FPI
Sbjct: 10 RLRADFTKTPTDLEVPNLLLLQRDSYDSFLY----SKDGKESGIEKVFKSIFPIQDEHNR 65
Query: 72 AMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK-SIKDIKEQSI 130
LE+ EF K+ V + + R +TY++PLKI +RLI+++ D +G K IKDIKEQSI
Sbjct: 66 ITLEYAGCEFGKSKYTVREAMERGITYSIPLKIKVRLILWEKDTKSGEKNGIKDIKEQSI 125
Query: 131 YMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRIIPDQGL 190
++ ++PLMT+ +F+I G++R+VV+QLHRSPG+ F ++ S KL+Y +IIPD+G
Sbjct: 126 FIREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESSTS-LNKLIYTGQIIPDRGS 184
Query: 191 WMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDFWCFPLS 250
W+ E+DSKD+++ RI++RRKVPVT A+ ++I+ FYP + D + P +
Sbjct: 185 WLYFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKYLIPFA 244
Query: 251 AADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLCGLYVAE 310
+ D ++ L D G+ ++ +GKKLTS +K LKE ++++ D L ++AE
Sbjct: 245 SLD--ANQRMEFDLKDPQ-GKIILLAGKKLTSRKIKELKENHLEWVEYPMDILLNRHLAE 301
Query: 311 DIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRNTLVTD----- 365
++ G+ E+ ++ +D+ LE+I +++ I+ ++ ++A I ++ D
Sbjct: 302 PVMVGK--EVLLDMLTQLDKNKLEKIHDLGVQEFVIINDLALGHDASIIHSFSADSESLK 359
Query: 366 ------KNKDRKD-ALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNM 418
K D A + I++VM+PGD T VA+ LFFD ++YDL+ VGR+KMN
Sbjct: 360 LLKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMKMNH 419
Query: 419 RLNLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLG 478
+L L PD + + EDII +K L+ ++N +G IDD D+LGNRR+R+VGE+L N+ G
Sbjct: 420 KLGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANELHSG 479
Query: 479 LLRMERSIKERIS--SVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRIT 536
L++M+++IK++++ S DS+MP DL+N+K + S + EFF QLSQ + N LS +T
Sbjct: 480 LVKMQKTIKDKLTTMSGAFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLSEVT 539
Query: 537 HTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYG 596
H RRLSALG+GG+ + R G E RDVHPTHYGRICP ET EG NIGL+++L++F RVN G
Sbjct: 540 HKRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVNDLG 599
Query: 597 FIETPYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILV 656
FIE PY+KV DGKV + +YL+A++E++ IA A++ +DE+G+ +L+ R GE +L
Sbjct: 600 FIEAPYKKVVDGKVVGETIYLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEIVLN 659
Query: 657 PREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGME 716
+ K+ +D S +V +AASLIPFLE+DD+NR LMG NMQRQAVPLL+++AP VGTG+E
Sbjct: 660 EKSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRSDAPIVGTGIE 719
Query: 717 SVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCV 776
++A+ S AI A RAG+VE++D+ I I + +D Y L K R+NQNT
Sbjct: 720 KIIARDSWGAIKANRAGVVEKIDSKNIYILGE----GKEEAYIDAYSLQKNLRTNQNTSF 775
Query: 777 NQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSE 836
NQ P+VKVGD+V IIADGPS D G+LALG+N+ VAFMPW+GYNFED++++SER+ +
Sbjct: 776 NQVPIVKVGDKVEAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSERITKD 835
Query: 837 DVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVG 896
D+FTS HI E EV AR+ K G EE T DIP+V EE L ++DE GI+ VG V+ G ILVG
Sbjct: 836 DIFTSTHIYEKEVDARELKHGVEEFTADIPDVKEEALAHLDESGIVKVGTYVSAGMILVG 895
Query: 897 KITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERS 956
K +PKGE TPEE+LLRAIFG+KA V + SL P + GTV+DV++F + G +K+ R
Sbjct: 896 KTSPKGEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKDARV 955
Query: 957 ISVEREQIELLARDKDDEQVILDRNIYSRLMEILC----GQNAVSGPKGFKKSTVLS--- 1009
+S E+ L + D +L+R R+ +L + K +K+ +
Sbjct: 956 LSAYEEEKAKLDMEHFDRLTMLNREELLRVSSLLSQAILEEPFSHNGKDYKEGDQIPKEE 1015
Query: 1010 ---------SDLISEYPRSQWWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKI 1060
+ L+ +Y + VQ + E K + K +L + + K+ +
Sbjct: 1016 IASINRFTLASLVKKYSKE-----------VQNHYEITKNNFLEQKKVLGEEHEEKLSIL 1064
Query: 1061 QWGDDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDI 1120
+ D +P GV++ VK+++A KR ++ GDKMAGRHGNKGIVS I+P DMP+ DG PVDI
Sbjct: 1065 EKDDILPNGVIKKVKLYIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDI 1124
Query: 1121 VLNPLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGS 1180
VLNPLGVPSRMN+GQI E HLG GK+I S++ D K LR+ + ++ +
Sbjct: 1125 VLNPLGVPSRMNIGQILEMHLGLVGKEFGKQIASMLED-KTKDFAKELRAKMLEIANAIN 1183
Query: 1181 HTEK-----ISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSI 1235
+ + + D+ +L A+ W GV ++ PVF+G +E + +A + G+
Sbjct: 1184 EKDPLTIHALENCSDEELLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMD 1243
Query: 1236 LYDGLTGEPFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLG 1295
LYDG TGE V VGY+YM+KL+H+V +KV+ARSTG YSLVT QP+GGK+ GGQR G
Sbjct: 1244 LYDGRTGEKMRERVNVGYMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFG 1303
Query: 1296 EMEVWCIQAYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQ 1355
EMEVW ++AYGAA+ L+EMLTIKSDD+ GR Y +I G E+ PE+F VL KE+Q
Sbjct: 1304 EMEVWALEAYGAAHTLKEMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTKELQ 1363
Query: 1356 ALGLSIDL 1363
+L L I++
Sbjct: 1364 SLALDINI 1371