RPSBLAST alignment for GI: 254780143 and conserved domain: COG0085
>gnl|CDD|30434 COG0085, RpoB, DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]. Length = 1060
Score = 696 bits (1797), Expect = 0.0
Identities = 339/612 (55%), Positives = 421/612 (68%), Gaps = 26/612 (4%)
Query: 356 AYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVK 415
A+ + L + ++ALL+IY G+ T A + F +YD + GR K
Sbjct: 211 AFGGDELTDLVPPEGEEALLEIYE-EAKGEKITARNALELIGSRVFVVKRYD-AKEGRYK 268
Query: 416 MNMRLNL-----------DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRV 464
+ + D R + +DIIA+IK L++LR GKG DDID+LGNRR+
Sbjct: 269 RAKYVLDKELLPHLGEAGERYDLSRVGKAKDIIAMIKYLIELRLGKGEEDDIDHLGNRRL 328
Query: 465 RSVGEMLKNQYRLGLLRMERSIKERISSVDI-DSVMPQDLINAKPVVSAVCEFFCSSQLS 523
R VGE+L+N +R+GL RMER +KER+ D D+++PQDLINAKP+ + + FF SQLS
Sbjct: 329 RLVGELLENLFRVGLSRMERDVKERLEKADKRDTLVPQDLINAKPIHALITGFFGRSQLS 388
Query: 524 QLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLV 583
Q + N LS ++H RRLSALG ++R RAG E+RDVHPTHYGRICP ET EG NIGL+
Sbjct: 389 QFMDQTNPLSELSHKRRLSALG---LSRERAGFEVRDVHPTHYGRICPIETPEGPNIGLI 445
Query: 584 SSLTSFARVNAYGFIETPYRKVCDG-KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTE 642
SL +AR+N YGF+ETPYRKV DG V +++ YLSA EE+ I QAN +LDE G E
Sbjct: 446 KSLALYARINEYGFLETPYRKVLDGSLVVDEIEYLSADEEDVYVIGQANGTLDEPGELVE 505
Query: 643 ELVFCRCAGEE--ILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQA 700
ELV CR G + E +D++D SPKQVVS+ SLIPFLE+DD+NR LMG NMQRQA
Sbjct: 506 ELVECRRGGSGEVSVADPEGVDYMDVSPKQVVSVGRSLIPFLEHDDANRALMGSNMQRQA 565
Query: 701 VPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDP-STSGV 759
VPLL+ EAP VGTGME + A+ SGAA++AKR G+V V+ IVI +E L P
Sbjct: 566 VPLLRTEAPLVGTGMEYLDAEDSGAAVIAKRPGVVTHVEISPIVILGIEASLIPYPEHNQ 625
Query: 760 DIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWH 819
Y L KF RSNQ T +NQRPLVK GD V + + ADGPS D G+LALG+N LVAFMPW+
Sbjct: 626 SPYNLYKFARSNQATGINQRPLVKRGDTVEKGLVYADGPSVDTGELALGQNALVAFMPWN 685
Query: 820 GYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDEC 879
GYN+ED+++ISER V D+FTSIHIEE+E ARDTKLGPEEI RDIPNVSEE L+N+DE
Sbjct: 686 GYNYEDAIIISERSVERDLFTSIHIEEYETEARDTKLGPEEI-RDIPNVSEEALRNLDED 744
Query: 880 GIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTV 939
GII +GAEV GDILVGK+TPKGE+ +TPEE+LLR IFGEK VRDTSLRVP G G V
Sbjct: 745 GIIRIGAEVKGGDILVGKVTPKGETELTPEERLLR-IFGEK---VRDTSLRVPHGEEGIV 800
Query: 940 VDVRIFNRHGID 951
DV++F R D
Sbjct: 801 DDVQVFTREDGD 812