RPSBLAST alignment for GI: 254780143 and conserved domain: COG0085

>gnl|CDD|30434 COG0085, RpoB, DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]. Length = 1060
 Score =  696 bits (1797), Expect = 0.0
 Identities = 339/612 (55%), Positives = 421/612 (68%), Gaps = 26/612 (4%)

Query: 356 AYIRNTLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVK 415
           A+  + L      + ++ALL+IY     G+  T   A  +     F   +YD +  GR K
Sbjct: 211 AFGGDELTDLVPPEGEEALLEIYE-EAKGEKITARNALELIGSRVFVVKRYD-AKEGRYK 268

Query: 416 MNMRLNL-----------DTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRV 464
               +             +  D  R  + +DIIA+IK L++LR GKG  DDID+LGNRR+
Sbjct: 269 RAKYVLDKELLPHLGEAGERYDLSRVGKAKDIIAMIKYLIELRLGKGEEDDIDHLGNRRL 328

Query: 465 RSVGEMLKNQYRLGLLRMERSIKERISSVDI-DSVMPQDLINAKPVVSAVCEFFCSSQLS 523
           R VGE+L+N +R+GL RMER +KER+   D  D+++PQDLINAKP+ + +  FF  SQLS
Sbjct: 329 RLVGELLENLFRVGLSRMERDVKERLEKADKRDTLVPQDLINAKPIHALITGFFGRSQLS 388

Query: 524 QLEEHVNSLSRITHTRRLSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLV 583
           Q  +  N LS ++H RRLSALG   ++R RAG E+RDVHPTHYGRICP ET EG NIGL+
Sbjct: 389 QFMDQTNPLSELSHKRRLSALG---LSRERAGFEVRDVHPTHYGRICPIETPEGPNIGLI 445

Query: 584 SSLTSFARVNAYGFIETPYRKVCDG-KVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTE 642
            SL  +AR+N YGF+ETPYRKV DG  V +++ YLSA EE+   I QAN +LDE G   E
Sbjct: 446 KSLALYARINEYGFLETPYRKVLDGSLVVDEIEYLSADEEDVYVIGQANGTLDEPGELVE 505

Query: 643 ELVFCRCAGEE--ILVPREKIDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQA 700
           ELV CR  G     +   E +D++D SPKQVVS+  SLIPFLE+DD+NR LMG NMQRQA
Sbjct: 506 ELVECRRGGSGEVSVADPEGVDYMDVSPKQVVSVGRSLIPFLEHDDANRALMGSNMQRQA 565

Query: 701 VPLLKAEAPFVGTGMESVVAKSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDP-STSGV 759
           VPLL+ EAP VGTGME + A+ SGAA++AKR G+V  V+   IVI  +E  L P      
Sbjct: 566 VPLLRTEAPLVGTGMEYLDAEDSGAAVIAKRPGVVTHVEISPIVILGIEASLIPYPEHNQ 625

Query: 760 DIYRLMKFQRSNQNTCVNQRPLVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWH 819
             Y L KF RSNQ T +NQRPLVK GD V +  + ADGPS D G+LALG+N LVAFMPW+
Sbjct: 626 SPYNLYKFARSNQATGINQRPLVKRGDTVEKGLVYADGPSVDTGELALGQNALVAFMPWN 685

Query: 820 GYNFEDSMLISERMVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDEC 879
           GYN+ED+++ISER V  D+FTSIHIEE+E  ARDTKLGPEEI RDIPNVSEE L+N+DE 
Sbjct: 686 GYNYEDAIIISERSVERDLFTSIHIEEYETEARDTKLGPEEI-RDIPNVSEEALRNLDED 744

Query: 880 GIICVGAEVNPGDILVGKITPKGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTV 939
           GII +GAEV  GDILVGK+TPKGE+ +TPEE+LLR IFGEK   VRDTSLRVP G  G V
Sbjct: 745 GIIRIGAEVKGGDILVGKVTPKGETELTPEERLLR-IFGEK---VRDTSLRVPHGEEGIV 800

Query: 940 VDVRIFNRHGID 951
            DV++F R   D
Sbjct: 801 DDVQVFTREDGD 812