RPSBLAST alignment for GI: 254780143 and conserved domain: COG0085

>gnl|CDD|30434 COG0085, RpoB, DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]. Length = 1060

 Score =  352 bits (905), Expect = 4e-97
 Identities = 153/306 (50%), Positives = 188/306 (61%), Gaps = 54/306 (17%)

Query: 1064 DDMPPGVLRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLN 1123
            +D  PGV ++VKV+VA KR  Q GDKMAGRHGNKG+VS+I+P EDMPFL+DGTP DI+LN
Sbjct: 809  EDGDPGVNKLVKVYVAQKRKPQIGDKMAGRHGNKGVVSKIVPQEDMPFLEDGTPPDIILN 868

Query: 1124 PLGVPSRMNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTE 1183
            PLGVPSRMN+GQI ETHLG A   LG  + + + D     DI                  
Sbjct: 869  PLGVPSRMNIGQILETHLGKAAALLGIPVDTPVFDGAPEEDIR----------------- 911

Query: 1184 KISDYDDDSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGE 1243
                     +L+ A    SG      ++DG                           TGE
Sbjct: 912  --------ELLKEAGFPYSG---KEVLYDGR--------------------------TGE 934

Query: 1244 PFDRPVTVGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQ 1303
            PFD P+ VG +Y  KL+HMV DK++ARSTG YSLVTQQPLGGK+  GGQR GEMEVW ++
Sbjct: 935  PFDAPIFVGVMYYQKLHHMVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALE 994

Query: 1304 AYGAAYVLQEMLTIKSDDVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDL 1363
            AYGAAY LQE LT+KSDDV GR ++YE IV G +  E G PESF VL+KE+++LG+ + L
Sbjct: 995  AYGAAYTLQERLTVKSDDVCGRIKIYECIVKGENIPEVGIPESFKVLLKELRSLGIDVRL 1054

Query: 1364 ENSRTK 1369
            E    K
Sbjct: 1055 ELEDGK 1060