RPSBLAST alignment for GI: 254780143 and conserved domain: COG0085

>gnl|CDD|30434 COG0085, RpoB, DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]. Length = 1060

 Score =  228 bits (582), Expect = 1e-59
 Identities = 114/334 (34%), Positives = 174/334 (52%), Gaps = 39/334 (11%)

Query: 6   VFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFKSVFPI 65
            + G  R+R  FGK PE +D+P+L+E+Q  SY+ F            EGLQ  F+ +FPI
Sbjct: 4   SYTGKKRIRDSFGKIPEFLDLPNLVEIQLDSYNAFF----------LEGLQEVFREIFPI 53

Query: 66  TAFSGAAMLEFVSYEFD-PPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAKSIKD 124
            +++G   LE+ SY    PPKF  ++C  R LTY+ PL + LRL+V +  E        +
Sbjct: 54  ESYNGNTELEYGSYRLGEPPKFYPEECRLRGLTYSAPLYVKLRLVVNETGE--------E 105

Query: 125 IKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLYACRI 184
           IKEQ +YMGD+PLMT+ G F+I G +R++VSQ HRSPG+ F   K +     K+LY  R+
Sbjct: 106 IKEQEVYMGDIPLMTRGGYFIINGTERVIVSQEHRSPGVIFVEKKDKTGS--KVLYVARV 163

Query: 185 IPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQRGDF 244
           IP +G W++ EFD KD ++VRIDR+RK+PVT  L ALG++++E +          +  D 
Sbjct: 164 IPYRGSWLEFEFDPKDNLYVRIDRKRKIPVTILLRALGLETDEEIIEA---FGGDELTDL 220

Query: 245 WCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITSDCLC 304
              P    + +        L   +  +     G+K+T+     L    V  +        
Sbjct: 221 --VPPEGEEAL--------LEIYEEAK-----GEKITARNALELIGSRVFVVKRYDAKEG 265

Query: 305 GLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFH 338
               A+ +++ E      EAG+  D   + +   
Sbjct: 266 RYKRAKYVLDKELLPHLGEAGERYDLSRVGKAKD 299