RPSBLAST alignment for GI: 254780143 and conserved domain: KOG0214

>gnl|CDD|35435 KOG0214, KOG0214, KOG0214, RNA polymerase II, second largest subunit [Transcription]. Length = 1141

 Score =  189 bits (482), Expect = 4e-48
 Identities = 87/298 (29%), Positives = 128/298 (42%), Gaps = 64/298 (21%)

Query: 1071 LRVVKVFVAMKRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSR 1130
             + VKV V   R  Q GDK A RHG KG +      EDMPF  +G   DI++NP  +PSR
Sbjct: 883  PKFVKVRVRQVRIPQIGDKFASRHGQKGTIGITYRQEDMPFTIEGIVPDIIINPHAIPSR 942

Query: 1131 MNVGQIFETHLGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDD 1190
            M +GQ+ E  LG                               KV    ++  +  D   
Sbjct: 943  MTIGQLIECLLG-------------------------------KV---AAYEGEEGD--- 965

Query: 1191 DSVLRVAEQWKSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVT 1250
                            +TP F       I++ L +      G   +Y+G TG      + 
Sbjct: 966  ----------------ATP-FSDVTVSKISANLHVYGYQYRGNERMYNGRTGRKLRAQIF 1008

Query: 1251 VGYIYMLKLNHMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYV 1310
            +G  Y  +L HMV DK+++R+ G   ++T+QP+ G+S  GG R GEME  C+ A+GAA  
Sbjct: 1009 IGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCLIAHGAAAF 1068

Query: 1311 LQEMLTIKSD-------DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSI 1361
            L+E L  KSD        + G T +   I    ++FE    E+  ++V+        +
Sbjct: 1069 LKERLFEKSDAYRVHICVLCGLTAIAGLI---PNSFECRGCENKTLVVRVYIPYAAKL 1123