Query gi|254780144|ref|YP_003064557.1| 50S ribosomal protein L12P [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 126
No_of_seqs 114 out of 1829
Neff 5.0
Searched_HMMs 33803
Date Sun May 22 12:37:03 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780144.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2zjq_5 50S ribosomal protein 100.0 6.7E-38 2E-42 248.9 13.1 120 2-126 3-122 (122)
2 3i8i_J Elongation Complex Of T 100.0 9.8E-37 2.9E-41 241.9 -8.1 123 1-126 1-125 (125)
3 >1rqu_A L8, 50S ribosomal prot 99.9 2E-25 5.8E-30 173.7 7.1 79 46-126 2-80 (80)
4 >1ctf_A Ribosomal protein L7/L 99.9 1.2E-24 3.6E-29 169.0 5.7 74 51-126 1-74 (74)
5 >2ftc_E Mitochondrial ribosoma 99.9 9.9E-24 2.9E-28 163.5 8.1 71 55-126 1-72 (72)
6 >1dd3_A 50S ribosomal protein 99.9 5.4E-23 1.6E-27 159.1 6.2 68 57-126 1-71 (71)
7 >1dd3_A 50S ribosomal protein 99.0 5E-11 1.5E-15 86.9 0.5 53 4-56 3-57 (57)
8 >1dd4_C 50S ribosomal protein 98.4 3.7E-07 1.1E-11 63.6 4.5 38 3-40 2-39 (40)
9 >2ftc_E Mitochondrial ribosoma 98.4 6.1E-07 1.8E-11 62.3 5.2 37 3-39 2-38 (65)
10 >1rqt_A L8, 50S ribosomal prot 97.6 6.2E-05 1.8E-09 50.2 4.4 32 5-36 5-36 (37)
11 >1zav_U 50S ribosomal protein 96.8 0.0013 3.8E-08 42.3 4.1 29 3-31 2-30 (30)
12 >1aip_C EF-TS, elongation fact 68.3 4.5 0.00013 20.9 2.9 30 71-100 3-32 (137)
13 >1xb2_B EF-TS, elongation fact 64.7 6.3 0.00019 20.0 3.1 28 71-98 4-31 (45)
14 >2cp9_A EF-TS, EF-TSMT, elonga 64.5 5.5 0.00016 20.3 2.8 37 71-113 9-45 (64)
15 >1efu_B Elongation factor TS; 58.0 9.8 0.00029 18.8 3.1 30 71-100 4-33 (265)
16 >2f9w_A Pantothenate kinase; C 36.0 27 0.00081 16.1 2.5 32 5-36 56-101 (104)
17 >2kci_A Putative acyl carrier 25.2 45 0.0013 14.8 2.1 21 14-34 34-54 (63)
18 >1nxh_A MTH396 protein; hypoth 24.7 50 0.0015 14.6 2.4 19 100-118 26-44 (69)
19 >3jyw_V 60S ribosomal protein 23.3 46 0.0014 14.8 1.9 15 111-125 79-93 (94)
20 >1vq8_O 50S ribosomal protein 22.7 47 0.0014 14.8 1.8 15 111-125 47-61 (78)
21 >1vr6_A Phospho-2-dehydro-3-de 20.8 60 0.0018 14.1 2.8 27 99-125 16-42 (85)
No 1
>>2zjq_5 50S ribosomal protein L7/L12; ribosome, ribosomal subunit, thiopeptide antibiotics, complex, translational regulation, molecular switch; 3.30A {Deinococcus radiodurans} (5:)
Probab=100.00 E-value=6.7e-38 Score=248.87 Aligned_cols=120 Identities=49% Similarity=0.697 Sum_probs=107.9
Q ss_pred CCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 71899999996099999999999999993787100012235544443222222243115777437755433578776776
Q gi|254780144|r 2 SNIESIVEKLSSLTLIEAAELSKRLEKEWGVSASAPVSVVAPVAAEAGSAASEKTEFEVVLKGFDDPKKKIAVIKEVRAI 81 (126)
Q Consensus 2 aki~~ive~i~~LTllE~~eLv~~leekfgv~~~~~~~~~~~~~~~~~~~~~EKt~fdV~L~~~~~~~~Ki~vIK~vR~i 81 (126)
.+.++|+++|++||++|++||++.|+++|||++.+++++ ++++++.++++|||+|||+|++|+ ++||+|||+||++
T Consensus 3 ~~~~~ive~i~~LTllE~~eLv~~leek~gv~~~~~~~~--~~~~~~~~~~~ekt~F~V~L~~~~--~~Ki~vIK~vR~i 78 (122)
T 2zjq_5 3 YDKQALIDQLGQLTIMELADLIDGLKETWGVTAAVAVSG--GGAGAASPAAEEKTEFDVVLIDAG--ASKINVIKEIRGI 78 (122)
T ss_pred CCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCC--CCCCCCCCCCCCCCEEEEEEECCC--CCCCCHHHHHHHC
T ss_conf 769999999970889999999999999969984444566--666666665555554677630278--7652013498761
Q ss_pred CCCCHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHCCCEEEEC
Q ss_conf 599889999998637977660999899999999999748579939
Q gi|254780144|r 82 TDLGLKEAKELVESAPKSLKTGLSKDEANEMKKKLEDAGATVELR 126 (126)
Q Consensus 82 t~LgLkEAK~lVe~~P~~ike~v~keeAE~ik~~Le~aGa~VeiK 126 (126)
|||||||||+|||+ |++||+|+||+|||++|++|+++||+|+||
T Consensus 79 t~LgLkEAK~lVE~-p~~ike~vsKeeAE~ikkkLe~aGA~VeiK 122 (122)
T 2zjq_5 79 TGLGLKEAKDMSEK-GGVLKEGVAKDEAEKMKAQLEAAGARVELK 122 (122)
T ss_pred CCCCHHHHHHHHHC-CHHHHCCCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf 79988999987607-657751899999999999999859979739
No 2
>3i8i_J Elongation Complex Of The 70s Ribosome With Three Trnas And Mrna. This Entry 3i8i Contains 50s Ribosomal Subnit. {Thermus thermophilus HB8} (J:)
Probab=100.00 E-value=9.8e-37 Score=241.85 Aligned_cols=123 Identities=55% Similarity=0.793 Sum_probs=110.9
Q ss_pred CC-CHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCC-CCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHH
Q ss_conf 97-1899999996099999999999999993787100012235-544443222222243115777437755433578776
Q gi|254780144|r 1 MS-NIESIVEKLSSLTLIEAAELSKRLEKEWGVSASAPVSVVA-PVAAEAGSAASEKTEFEVVLKGFDDPKKKIAVIKEV 78 (126)
Q Consensus 1 ma-ki~~ive~i~~LTllE~~eLv~~leekfgv~~~~~~~~~~-~~~~~~~~~~~EKt~fdV~L~~~~~~~~Ki~vIK~v 78 (126)
|| ++++|+|+|++|||+|++||++.|+++|||++++++++++ +++++++++.+|||+|||+|++|++ +||++||+|
T Consensus 1 mS~~~~~iv~~i~~LtllE~~eLv~~le~~~gv~~~~~~~~~~~~~~~~~~~~~~ekt~fdV~L~~~~~--~Ki~vIK~v 78 (125)
T 3i8i_J 1 MALDIERIKEELSQATVLELKQLIDALKEAWGVTAAAPVAVAAAPAAGAAAAPAEEKTEFDVILKEAGA--KKLEVIKEL 78 (125)
T ss_dssp CHHHHHTTTSCSSSSSSSTTSTTTGGGTCC--------------------------------------------------
T ss_pred CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHCCCEEEEEECCCCH--HHHHHHHHH
T ss_conf 986588899998628788999999999987088954334455678876545400015511354057771--569999998
Q ss_pred HHHCCCCHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHCCCEEEEC
Q ss_conf 776599889999998637977660999899999999999748579939
Q gi|254780144|r 79 RAITDLGLKEAKELVESAPKSLKTGLSKDEANEMKKKLEDAGATVELR 126 (126)
Q Consensus 79 R~it~LgLkEAK~lVe~~P~~ike~v~keeAE~ik~~Le~aGa~VeiK 126 (126)
|++|||||+|||++|| +|++||++++|+|||++|++|+++||+|+||
T Consensus 79 R~it~lgLkEAK~lVe-aP~~ike~vsKeeAE~ik~kLe~aGA~Veik 125 (125)
T 3i8i_J 79 RAITGLGLKEAKDLAE-KGGPVKEGVSKQEAEEIKKKLEAVGAVVELK 125 (125)
T ss_dssp ------------------------------------------------
T ss_pred HHHCCCCHHHHHHHHH-CCHHHHHCCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf 8405998889999871-7536650799878999999998768636409
No 3
>>1rqu_A L8, 50S ribosomal protein L7/L12; ribosome,; NMR {Escherichia coli} (A:41-120)
Probab=99.92 E-value=2e-25 Score=173.73 Aligned_cols=79 Identities=61% Similarity=0.825 Sum_probs=74.3
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf 44322222224311577743775543357877677659988999999863797766099989999999999974857993
Q gi|254780144|r 46 AEAGSAASEKTEFEVVLKGFDDPKKKIAVIKEVRAITDLGLKEAKELVESAPKSLKTGLSKDEANEMKKKLEDAGATVEL 125 (126)
Q Consensus 46 ~~~~~~~~EKt~fdV~L~~~~~~~~Ki~vIK~vR~it~LgLkEAK~lVe~~P~~ike~v~keeAE~ik~~Le~aGa~Vei 125 (126)
++..+..+|||+|||+|++|+ ++||+|||+||++|||||+|||+|||++|++|+++++++|||++|++|+++||+|+|
T Consensus 2 ~~~~~~~~ekt~f~V~L~~~~--~~Ki~vIK~VR~itglgL~eAK~lve~~P~~ike~v~keeAE~ik~~Le~aGA~vei 79 (80)
T 1rqu_A 2 AGPVEAAEEKTEFDVILKAAG--ANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEV 79 (80)
T ss_dssp CCCCCSSCCCCCEEEEEEECC--SCHHHHHHHHHHHSCCCHHHHHHHHHTCSEEEEEEECHHHHHHHHHHHHHHTCEEEE
T ss_pred CCCCCCCCCCCHHHHHHHCCC--CCCHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 676544444303566640255--431178999998259988999999870879888089999999999999985997852
Q ss_pred C
Q ss_conf 9
Q gi|254780144|r 126 R 126 (126)
Q Consensus 126 K 126 (126)
|
T Consensus 80 k 80 (80)
T 1rqu_A 80 K 80 (80)
T ss_dssp C
T ss_pred C
T ss_conf 9
No 4
>>1ctf_A Ribosomal protein L7/L12; 1.70A {Escherichia coli} (A:)
Probab=99.90 E-value=1.2e-24 Score=168.98 Aligned_cols=74 Identities=64% Similarity=0.886 Sum_probs=70.9
Q ss_pred CCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHCCCEEEEC
Q ss_conf 2222243115777437755433578776776599889999998637977660999899999999999748579939
Q gi|254780144|r 51 AASEKTEFEVVLKGFDDPKKKIAVIKEVRAITDLGLKEAKELVESAPKSLKTGLSKDEANEMKKKLEDAGATVELR 126 (126)
Q Consensus 51 ~~~EKt~fdV~L~~~~~~~~Ki~vIK~vR~it~LgLkEAK~lVe~~P~~ike~v~keeAE~ik~~Le~aGa~VeiK 126 (126)
+++|||+|||+|++|+ ++||+|||+||++|||||+|||+|||++|++|+++++++|||++|++|+++||+|+||
T Consensus 1 a~~ekt~f~V~L~~~~--~~Ki~vIK~vR~itgl~L~eAK~lve~~P~~ike~v~keeAe~ik~~le~aGA~v~lk 74 (74)
T 1ctf_A 1 AAEEKTEFDVILKAAG--ANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEVK 74 (74)
T ss_dssp ------CEEEEEEECG--GGHHHHHHHHHHHHCCCHHHHHHHHHTCSEEEEEEECHHHHHHHHHHHHHHTCEEEEC
T ss_pred CCCCCCEEEEEEEECC--CCCHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf 9865662189984268--6402588999886598589999988718898872899999999999999859989749
No 5
>>2ftc_E Mitochondrial ribosomal protein L7/12, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} (E:66-137)
Probab=99.90 E-value=9.9e-24 Score=163.47 Aligned_cols=71 Identities=38% Similarity=0.586 Sum_probs=67.8
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHH-HCCCCHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHCCCEEEEC
Q ss_conf 24311577743775543357877677-6599889999998637977660999899999999999748579939
Q gi|254780144|r 55 KTEFEVVLKGFDDPKKKIAVIKEVRA-ITDLGLKEAKELVESAPKSLKTGLSKDEANEMKKKLEDAGATVELR 126 (126)
Q Consensus 55 Kt~fdV~L~~~~~~~~Ki~vIK~vR~-it~LgLkEAK~lVe~~P~~ike~v~keeAE~ik~~Le~aGa~VeiK 126 (126)
||+|||+|++|++ ++||+|||+||+ +|||||+|||++||++|++|++++||+|||++|++|+++||+|+|.
T Consensus 1 Kt~f~V~L~~~~~-~kKi~vIK~vr~~~tglgL~eAK~lVe~~P~~ike~v~keeAE~ik~~Le~aGA~Vele 72 (72)
T 2ftc_E 1 RTHFTVRLTEAKP-VDKVKLIKEIKNYVQGINLVQAKKLVESLPQEIKANVAKAEAEKIKAALEAVGGTVVLE 72 (72)
T ss_pred CCEEEEEECCCCC-CCHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf 3356887224774-11457999999871799879999998708888870899999999999999859979739
No 6
>>1dd3_A 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; 2.00A {Thermotoga maritima} (A:58-128)
Probab=99.88 E-value=5.4e-23 Score=159.05 Aligned_cols=68 Identities=66% Similarity=0.931 Sum_probs=65.5
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCH---HHHHCCCHHHHHHHHHHHHHCCCEEEEC
Q ss_conf 311577743775543357877677659988999999863797---7660999899999999999748579939
Q gi|254780144|r 57 EFEVVLKGFDDPKKKIAVIKEVRAITDLGLKEAKELVESAPK---SLKTGLSKDEANEMKKKLEDAGATVELR 126 (126)
Q Consensus 57 ~fdV~L~~~~~~~~Ki~vIK~vR~it~LgLkEAK~lVe~~P~---~ike~v~keeAE~ik~~Le~aGa~VeiK 126 (126)
+|||+|++|+ ++||+|||+||++|||||+|||+|||++|+ +|++++||+|||++|++|+++||+|+||
T Consensus 1 EF~V~L~~~~--~~Ki~vIK~Vr~itglgLkEAK~lVe~~P~~~~~ike~vskeeAE~iK~~Le~aGA~Veik 71 (71)
T 1dd3_A 1 EFDVVLKSFG--QNKIQVIKVVREITGLGLKEAKDLVEKAGSPDAVIKSGVSKEEAEEIKKKLEEAGAEVELK 71 (71)
T ss_dssp SEEEEEEECT--TCHHHHHHHHHHHHCCCHHHHHHHHTTTTSTTCEEEEEECHHHHHHHHHHHHHTTCEEEEC
T ss_pred EEEEEEECCC--CCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf 3599984177--6405899999885599889999999715787267853889999999999999859979739
No 7
>>1dd3_A 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; 2.00A {Thermotoga maritima} (A:1-57)
Probab=99.01 E-value=5e-11 Score=86.93 Aligned_cols=53 Identities=51% Similarity=0.726 Sum_probs=43.4
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCC--CCCCCCCCCCCCCC
Q ss_conf 899999996099999999999999993787100012235--54444322222224
Q gi|254780144|r 4 IESIVEKLSSLTLIEAAELSKRLEKEWGVSASAPVSVVA--PVAAEAGSAASEKT 56 (126)
Q Consensus 4 i~~ive~i~~LTllE~~eLv~~leekfgv~~~~~~~~~~--~~~~~~~~~~~EKt 56 (126)
+++|++.|++||++|++|||+.||++||||+++|+++++ ++++++.+..+|||
T Consensus 3 ~~~iie~ik~ltllE~sELVk~iEe~FgVsAaapv~~~~~~~~~~a~a~~~EEKT 57 (57)
T 1dd3_A 3 IDEIIEAIEKLTVSELAELVKKLEDKFGVTAAAPVAVAAAPVAGAAAGAAQEEKT 57 (57)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 8999999970989999999999999979886642233467766666543201155
No 8
>>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} (C:)
Probab=98.38 E-value=3.7e-07 Score=63.59 Aligned_cols=38 Identities=50% Similarity=0.793 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 18999999960999999999999999937871000122
Q gi|254780144|r 3 NIESIVEKLSSLTLIEAAELSKRLEKEWGVSASAPVSV 40 (126)
Q Consensus 3 ki~~ive~i~~LTllE~~eLv~~leekfgv~~~~~~~~ 40 (126)
.+++|++.|.+|+++|++|||+.+|++|||++++|+++
T Consensus 2 tieqileaie~m~v~elnelvka~eekfgvsaaapv~v 39 (40)
T 1dd4_C 2 TIDEIIEAIEKLTVSELAELVKKLEDKFGVTAAAPVAV 39 (40)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHTCCCSCC----
T ss_pred CHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 79999999985649999999999999858762454025
No 9
>>2ftc_E Mitochondrial ribosomal protein L7/12, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} (E:1-65)
Probab=98.36 E-value=6.1e-07 Score=62.26 Aligned_cols=37 Identities=27% Similarity=0.485 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 1899999996099999999999999993787100012
Q gi|254780144|r 3 NIESIVEKLSSLTLIEAAELSKRLEKEWGVSASAPVS 39 (126)
Q Consensus 3 ki~~ive~i~~LTllE~~eLv~~leekfgv~~~~~~~ 39 (126)
||.+|+++|++|||+|++||+..|+.++|++..+.++
T Consensus 2 Ki~~iV~~Is~LtLlEvsdL~~~LK~~Lni~d~~~mp 38 (65)
T 2ftc_E 2 KIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLMP 38 (65)
T ss_pred CHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 6899999997088999999999999996898432222
No 10
>>1rqt_A L8, 50S ribosomal protein L7/L12; protein L7/L12,ribosome,; NMR {Escherichia coli} (A:)
Probab=97.63 E-value=6.2e-05 Score=50.18 Aligned_cols=32 Identities=31% Similarity=0.672 Sum_probs=30.3
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999996099999999999999993787100
Q gi|254780144|r 5 ESIVEKLSSLTLIEAAELSKRLEKEWGVSASA 36 (126)
Q Consensus 5 ~~ive~i~~LTllE~~eLv~~leekfgv~~~~ 36 (126)
++|++.|.+|+++++.+|++.+|+||||++++
T Consensus 5 e~IL~aia~MSVmdvveLi~aMEeKFGVsaaa 36 (37)
T 1rqt_A 5 DQIIEAVAAMSVMDVVELISAMEEKFGVSAAA 36 (37)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHTTCCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999831999999999999984877467
No 11
>>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} (U:)
Probab=96.83 E-value=0.0013 Score=42.26 Aligned_cols=29 Identities=45% Similarity=0.737 Sum_probs=27.6
Q ss_pred CHHHHHHHHHHCCHHHHHHHHHHHHHHHC
Q ss_conf 18999999960999999999999999937
Q gi|254780144|r 3 NIESIVEKLSSLTLIEAAELSKRLEKEWG 31 (126)
Q Consensus 3 ki~~ive~i~~LTllE~~eLv~~leekfg 31 (126)
.+++|++.|..||+-|++|||+.++++||
T Consensus 2 t~~eii~aie~ltv~elaelvk~ledkfg 30 (30)
T 1zav_U 2 TIDEIIEAIEKLTVSELAELVKKLEDKFG 30 (30)
T ss_dssp CHHHHHHHHHHSBHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 79999999999619999999999876648
No 12
>>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} (C:1-104,C:164-196)
Probab=68.30 E-value=4.5 Score=20.86 Aligned_cols=30 Identities=27% Similarity=0.395 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHCCCCHHHHHHHHHHCCHHH
Q ss_conf 335787767765998899999986379776
Q gi|254780144|r 71 KIAVIKEVRAITDLGLKEAKELVESAPKSL 100 (126)
Q Consensus 71 Ki~vIK~vR~it~LgLkEAK~lVe~~P~~i 100 (126)
.+..||.+|..||.|+.+.|+..+.+..-+
T Consensus 3 s~e~IK~LR~~Tgagi~dCKkAL~es~gDi 32 (137)
T 1aip_C 3 QMELIKKLREATGAGMMDVKRALEDAGWDE 32 (137)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHTTTCH
T ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHCCCCH
T ss_conf 479999999986988999999999849989
No 13
>>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} (B:1-45)
Probab=64.67 E-value=6.3 Score=19.98 Aligned_cols=28 Identities=14% Similarity=0.221 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHCCCCHHHHHHHHHHCCH
Q ss_conf 3357877677659988999999863797
Q gi|254780144|r 71 KIAVIKEVRAITDLGLKEAKELVESAPK 98 (126)
Q Consensus 71 Ki~vIK~vR~it~LgLkEAK~lVe~~P~ 98 (126)
-+..||.+|..||.|+.+.|...+.+-.
T Consensus 4 s~~~ik~LR~~Tgag~~dCKkAL~e~~g 31 (45)
T 1xb2_B 4 SKELLMKLRRKTGYSFINCKKALETCGG 31 (45)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHCCC
T ss_conf 6999999998859859999999998489
No 14
>>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} (A:)
Probab=64.54 E-value=5.5 Score=20.34 Aligned_cols=37 Identities=16% Similarity=0.198 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHCCCHHHHHHHH
Q ss_conf 3357877677659988999999863797766099989999999
Q gi|254780144|r 71 KIAVIKEVRAITDLGLKEAKELVESAPKSLKTGLSKDEANEMK 113 (126)
Q Consensus 71 Ki~vIK~vR~it~LgLkEAK~lVe~~P~~ike~v~keeAE~ik 113 (126)
-+..||.+|.-||.|+.+.|+..+.+ +-+-+.|.++-
T Consensus 9 s~~~ik~LR~~Tga~~~dCKkAL~e~------~gD~~~A~~~L 45 (64)
T 2cp9_A 9 SKELLMKLRRKTGYSFVNCKKALETC------GGDLKQAEIWL 45 (64)
T ss_dssp CCHHHHHHHHHHCCCHHHHHHHHHHH------TSCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHC------CCCHHHHHHHH
T ss_conf 09999999999698899999999993------89999999999
No 15
>>1efu_B Elongation factor TS; complex (TWO elongation factors); 2.50A {Escherichia coli} (B:1-265)
Probab=58.00 E-value=9.8 Score=18.83 Aligned_cols=30 Identities=23% Similarity=0.419 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHCCCCHHHHHHHHHHCCHHH
Q ss_conf 335787767765998899999986379776
Q gi|254780144|r 71 KIAVIKEVRAITDLGLKEAKELVESAPKSL 100 (126)
Q Consensus 71 Ki~vIK~vR~it~LgLkEAK~lVe~~P~~i 100 (126)
-...||.+|..||.|+++.|+..+.+..-+
T Consensus 4 s~~~ik~LR~~Tgag~~~CKkAL~~~~gd~ 33 (265)
T 1efu_B 4 TASLVKELRERTGAGMMDCKKALTEANGDI 33 (265)
T ss_dssp CHHHHHHHHHHHCCCHHHHHHHHHHTTTCH
T ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHCCCCH
T ss_conf 899999999886985999999999848989
No 16
>>2f9w_A Pantothenate kinase; COAA, transferase; HET: PAU; 1.90A {Pseudomonas aeruginosa PAO1} (A:1-104)
Probab=36.00 E-value=27 Score=16.13 Aligned_cols=32 Identities=38% Similarity=0.486 Sum_probs=25.7
Q ss_pred HHHHHHHHHC--------------CHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9999999609--------------9999999999999993787100
Q gi|254780144|r 5 ESIVEKLSSL--------------TLIEAAELSKRLEKEWGVSASA 36 (126)
Q Consensus 5 ~~ive~i~~L--------------TllE~~eLv~~leekfgv~~~~ 36 (126)
+.+++++.+| +--|.+.|+..|.+.|||++.-
T Consensus 56 ~aLle~L~~l~~~~~~~CRLVSVRS~eETa~Lvs~L~~aF~Vs~vc 101 (104)
T 2f9w_A 56 DALVEQLTSQQALPVRACRLVSVRSEQETSQLVARLEQLFPVSALV 101 (104)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEECSCHHHHHHHHHHHHHHSSCCCEE
T ss_pred HHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 8999999975689987599999478889899999999866986499
No 17
>>2kci_A Putative acyl carrier protein; alpha, ACP, PCP, structural genomics, unknown function, PSI- 2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 2kjs_A* (A:1-63)
Probab=25.22 E-value=45 Score=14.84 Aligned_cols=21 Identities=14% Similarity=0.162 Sum_probs=14.9
Q ss_pred CCHHHHHHHHHHHHHHHCCCC
Q ss_conf 999999999999999937871
Q gi|254780144|r 14 LTLIEAAELSKRLEKEWGVSA 34 (126)
Q Consensus 14 LTllE~~eLv~~leekfgv~~ 34 (126)
+.=+...+|+-.||++|||.-
T Consensus 34 ~DSL~~~el~~~iE~~F~i~i 54 (63)
T 2kci_A 34 WDSLSHMNLIVSLEVHYKIKF 54 (63)
T ss_dssp CCSTHHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHHHCCCC
T ss_conf 658999999999999968986
No 18
>>1nxh_A MTH396 protein; hypothetical protein, disulfide bonds, homodimer, structural genomics, PSI, protein structure initiative; 2.80A {Methanothermobacterthermautotrophicus} (A:58-126)
Probab=24.74 E-value=50 Score=14.56 Aligned_cols=19 Identities=21% Similarity=0.427 Sum_probs=15.4
Q ss_pred HHHCCCHHHHHHHHHHHHH
Q ss_conf 6609998999999999997
Q gi|254780144|r 100 LKTGLSKDEANEMKKKLED 118 (126)
Q Consensus 100 ike~v~keeAE~ik~~Le~ 118 (126)
+.+=+|+++|+.|++++.+
T Consensus 26 ~~~lIs~~dAd~ir~kv~e 44 (69)
T 1nxh_A 26 VXEIISVDDAEALKDEITE 44 (69)
T ss_dssp TSCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999112079999999999
No 19
>>3jyw_V 60S ribosomal protein L28; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_V (V:49-142)
Probab=23.28 E-value=46 Score=14.77 Aligned_cols=15 Identities=40% Similarity=0.567 Sum_probs=10.5
Q ss_pred HHHHHHHHCCCEEEE
Q ss_conf 999999974857993
Q gi|254780144|r 111 EMKKKLEDAGATVEL 125 (126)
Q Consensus 111 ~ik~~Le~aGa~Vei 125 (126)
..+.++|.+|++|++
T Consensus 79 ~A~~~Ie~aGG~v~~ 93 (94)
T 3jyw_V 79 LAEEKIRAAGGVVEL 93 (94)
T ss_dssp HHHHHHHHHTCCEEC
T ss_pred HHHHHHHHCCCEEEE
T ss_conf 999999984998996
No 20
>>1vq8_O 50S ribosomal protein L18E; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} (O:39-116)
Probab=22.66 E-value=47 Score=14.75 Aligned_cols=15 Identities=27% Similarity=0.556 Sum_probs=9.5
Q ss_pred HHHHHHHHCCCEEEE
Q ss_conf 999999974857993
Q gi|254780144|r 111 EMKKKLEDAGATVEL 125 (126)
Q Consensus 111 ~ik~~Le~aGa~Vei 125 (126)
..+.++|++|++|++
T Consensus 47 sA~ekIe~aGG~v~~ 61 (78)
T 1vq8_O 47 TAETKIDQVGEAVSL 61 (78)
T ss_dssp HHHHHHHHHSEEEEH
T ss_pred HHHHHHHHCCCEEEH
T ss_conf 899999980987988
No 21
>>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for structural genomics, JCSG; 1.92A {Thermotoga maritima} (A:1-85)
Probab=20.85 E-value=60 Score=14.09 Aligned_cols=27 Identities=19% Similarity=0.295 Sum_probs=19.8
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf 766099989999999999974857993
Q gi|254780144|r 99 SLKTGLSKDEANEMKKKLEDAGATVEL 125 (126)
Q Consensus 99 ~ike~v~keeAE~ik~~Le~aGa~Vei 125 (126)
+.|.+.++++-+.+...|+..|-++.+
T Consensus 16 Vmk~~atee~i~~vi~~i~~~Gl~~h~ 42 (85)
T 1vr6_A 16 VLKPGSTEEDIRKVVKLAESYNLKCHI 42 (85)
T ss_dssp EECTTCCHHHHHHHHHHHHHTTEEEEE
T ss_pred EECCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 979998999999999999977994489
Done!