Query gi|254780144|ref|YP_003064557.1| 50S ribosomal protein L12P [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 126
No_of_seqs 114 out of 1829
Neff 5.0
Searched_HMMs 13730
Date Sun May 22 19:12:30 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780144.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2zjq51 d.45.1.1 (5:52-122) Ri 99.9 7E-25 5.1E-29 168.1 8.0 71 53-126 1-71 (71)
2 d1ctfa_ d.45.1.1 (A:) Ribosoma 99.9 3.2E-24 2.3E-28 164.1 5.7 68 57-126 1-68 (68)
3 d1dd3a2 d.45.1.1 (A:58-128) Ri 99.9 1.9E-23 1.4E-27 159.4 6.2 68 57-126 1-71 (71)
4 d1dd3a1 a.108.1.1 (A:1-57) Rib 98.9 6.2E-11 4.5E-15 84.0 0.5 55 1-56 1-57 (57)
5 d2gyc31 a.108.1.1 (3:2-48) Rib 98.3 2.1E-07 1.5E-11 62.7 4.0 40 5-44 4-43 (47)
6 d1zavu1 a.108.1.1 (U:1-30) Rib 97.0 0.00027 2E-08 44.0 4.1 29 3-31 2-30 (30)
7 d1aipc1 a.5.2.2 (C:2-53) Elong 83.6 0.39 2.9E-05 24.9 3.0 39 70-114 1-39 (52)
8 d1efub3 a.5.2.2 (B:1-54) Elong 76.6 0.97 7E-05 22.5 3.1 37 71-113 4-40 (54)
9 d1xb2b1 a.5.2.2 (B:56-111) Elo 73.3 1.3 9.6E-05 21.7 3.1 36 71-112 4-39 (56)
10 d1vqol1 c.12.1.1 (L:1-150) Rib 24.2 21 0.0015 14.5 2.7 16 110-125 127-142 (150)
11 d1r8da_ a.6.1.3 (A:) Multidrug 24.0 21 0.0015 14.5 3.1 27 70-97 47-73 (109)
12 d1jmsa3 a.60.12.1 (A:243-302) 20.6 25 0.0018 14.1 2.5 32 70-101 2-33 (60)
13 d1in0a2 d.58.49.1 (A:90-163) H 20.1 25 0.0018 14.0 2.1 26 99-124 8-33 (74)
No 1
>d2zjq51 d.45.1.1 (5:52-122) Ribosomal protein L7/12, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]}
Probab=99.91 E-value=7e-25 Score=168.06 Aligned_cols=71 Identities=59% Similarity=0.798 Sum_probs=67.5
Q ss_pred CCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHCCCEEEEC
Q ss_conf 22243115777437755433578776776599889999998637977660999899999999999748579939
Q gi|254780144|r 53 SEKTEFEVVLKGFDDPKKKIAVIKEVRAITDLGLKEAKELVESAPKSLKTGLSKDEANEMKKKLEDAGATVELR 126 (126)
Q Consensus 53 ~EKt~fdV~L~~~~~~~~Ki~vIK~vR~it~LgLkEAK~lVe~~P~~ike~v~keeAE~ik~~Le~aGa~VeiK 126 (126)
+|||+|||+|++|++ +||+|||+||++|||||+|||+|||+ |.+|++|++|+|||++|++|+++||+|+||
T Consensus 1 EEKt~F~V~L~~~~~--~Ki~vIK~VR~it~LgLkeAK~lVe~-p~~ike~vsKeeAE~~k~~Le~aGA~VelK 71 (71)
T d2zjq51 1 EEKTEFDVVLIDAGA--SKINVIKEIRGITGLGLKEAKDMSEK-GGVLKEGVAKDEAEKMKAQLEAAGARVELK 71 (71)
T ss_pred CCCCEEEEEEEECCC--CHHHHHHHHHHHCCCCHHHHHHHCCC-CHHHHCCCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf 987378999841786--40368999988659988999862138-637651898999999999999849989849
No 2
>d1ctfa_ d.45.1.1 (A:) Ribosomal protein L7/12, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=99.89 E-value=3.2e-24 Score=164.07 Aligned_cols=68 Identities=62% Similarity=0.895 Sum_probs=65.6
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHCCCEEEEC
Q ss_conf 3115777437755433578776776599889999998637977660999899999999999748579939
Q gi|254780144|r 57 EFEVVLKGFDDPKKKIAVIKEVRAITDLGLKEAKELVESAPKSLKTGLSKDEANEMKKKLEDAGATVELR 126 (126)
Q Consensus 57 ~fdV~L~~~~~~~~Ki~vIK~vR~it~LgLkEAK~lVe~~P~~ike~v~keeAE~ik~~Le~aGa~VeiK 126 (126)
+|||+|++|++ +||++||+||++|||||+|||+|||++|++|++|+||+|||++|++|+++||+|+||
T Consensus 1 EF~V~L~~~~~--~Ki~vIK~VR~it~lgLkEAK~lVe~~P~~ike~vskeeAE~ik~~Le~aGA~Velk 68 (68)
T d1ctfa_ 1 EFDVILKAAGA--NKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEVK 68 (68)
T ss_dssp CEEEEEEECGG--GHHHHHHHHHHHHCCCHHHHHHHHHTCSEEEEEEECHHHHHHHHHHHHHHTCEEEEC
T ss_pred CEEEEECCCCC--CHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf 90799713782--146899999984598799999998728898883999999999999999849989749
No 3
>d1dd3a2 d.45.1.1 (A:58-128) Ribosomal protein L7/12, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=99.88 E-value=1.9e-23 Score=159.36 Aligned_cols=68 Identities=66% Similarity=0.931 Sum_probs=64.7
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCH---HHHHCCCHHHHHHHHHHHHHCCCEEEEC
Q ss_conf 311577743775543357877677659988999999863797---7660999899999999999748579939
Q gi|254780144|r 57 EFEVVLKGFDDPKKKIAVIKEVRAITDLGLKEAKELVESAPK---SLKTGLSKDEANEMKKKLEDAGATVELR 126 (126)
Q Consensus 57 ~fdV~L~~~~~~~~Ki~vIK~vR~it~LgLkEAK~lVe~~P~---~ike~v~keeAE~ik~~Le~aGa~VeiK 126 (126)
+|||+|++|+ ++||+|||+||++|||||+|||+|||++|+ +||+|++|+|||++|++||++||+|+||
T Consensus 1 EF~V~L~~~~--~~KI~vIK~VR~it~lgLkEAK~lVe~~p~~~~vike~v~KeeAE~~K~~Le~aGA~V~lK 71 (71)
T d1dd3a2 1 EFDVVLKSFG--QNKIQVIKVVREITGLGLKEAKDLVEKAGSPDAVIKSGVSKEEAEEIKKKLEEAGAEVELK 71 (71)
T ss_dssp SEEEEEEECT--TCHHHHHHHHHHHHCCCHHHHHHHHTTTTSTTCEEEEEECHHHHHHHHHHHHHTTCEEEEC
T ss_pred CEEEEECCCC--CCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf 9179971168--6523577899872698789999999816884178862799999999999999849989739
No 4
>d1dd3a1 a.108.1.1 (A:1-57) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Thermotoga maritima [TaxId: 2336]}
Probab=98.93 E-value=6.2e-11 Score=83.98 Aligned_cols=55 Identities=51% Similarity=0.733 Sum_probs=43.1
Q ss_pred CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC--CCCCCCCCCCC
Q ss_conf 971899999996099999999999999993787100012235544--44322222224
Q gi|254780144|r 1 MSNIESIVEKLSSLTLIEAAELSKRLEKEWGVSASAPVSVVAPVA--AEAGSAASEKT 56 (126)
Q Consensus 1 maki~~ive~i~~LTllE~~eLv~~leekfgv~~~~~~~~~~~~~--~~~~~~~~EKt 56 (126)
|+ +++|++.|.+||++|++||++.+|++||||+++|+++++.+. ++++.+.+|||
T Consensus 1 mt-~e~iie~I~~~tv~El~ELvKalEekfGVsAaaPV~~~~~p~A~a~~aa~~EEkT 57 (57)
T d1dd3a1 1 MT-IDEIIEAIEKLTVSELAELVKKLEDKFGVTAAAPVAVAAAPVAGAAAGAAQEEKT 57 (57)
T ss_dssp CC-HHHHHHHHTTSCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CC-HHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCHHCCC
T ss_conf 97-8999999985529999999999999868540002776246666666553010159
No 5
>d2gyc31 a.108.1.1 (3:2-48) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Escherichia coli [TaxId: 562]}
Probab=98.31 E-value=2.1e-07 Score=62.70 Aligned_cols=40 Identities=33% Similarity=0.599 Sum_probs=35.6
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 9999999609999999999999999378710001223554
Q gi|254780144|r 5 ESIVEKLSSLTLIEAAELSKRLEKEWGVSASAPVSVVAPV 44 (126)
Q Consensus 5 ~~ive~i~~LTllE~~eLv~~leekfgv~~~~~~~~~~~~ 44 (126)
++|++.|.+||++|+.||++.+|+||||++++++++++++
T Consensus 4 e~Ileaia~MSVmdvveLi~amEEKFGVsaaa~va~~~~p 43 (47)
T d2gyc31 4 DQIIEAVAAMSVMDVVELISAMEEKFGVSAAAAVAVAAGP 43 (47)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHTCTTTTHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCC
T ss_conf 8999999972399999999999998584321100135775
No 6
>d1zavu1 a.108.1.1 (U:1-30) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Thermotoga maritima [TaxId: 2336]}
Probab=97.05 E-value=0.00027 Score=43.97 Aligned_cols=29 Identities=45% Similarity=0.737 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHCCHHHHHHHHHHHHHHHC
Q ss_conf 18999999960999999999999999937
Q gi|254780144|r 3 NIESIVEKLSSLTLIEAAELSKRLEKEWG 31 (126)
Q Consensus 3 ki~~ive~i~~LTllE~~eLv~~leekfg 31 (126)
.+++|++.|..||+-|++|||+.++++||
T Consensus 2 ~~eeiv~aiekltvaelaelvk~ledkfg 30 (30)
T d1zavu1 2 TIDEIIEAIEKLTVSELAELVKKLEDKFG 30 (30)
T ss_dssp CHHHHHHHHHHSBHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 79999999999619999999999876648
No 7
>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=83.65 E-value=0.39 Score=24.90 Aligned_cols=39 Identities=26% Similarity=0.511 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHCCCHHHHHHHHH
Q ss_conf 433578776776599889999998637977660999899999999
Q gi|254780144|r 70 KKIAVIKEVRAITDLGLKEAKELVESAPKSLKTGLSKDEANEMKK 114 (126)
Q Consensus 70 ~Ki~vIK~vR~it~LgLkEAK~lVe~~P~~ike~v~keeAE~ik~ 114 (126)
+++..||.+|+.||.|+++.|...+.+ +-+-+.|.++-.
T Consensus 1 s~~elvK~LR~~Tga~~~dcKkAL~e~------~gD~ekA~e~Lr 39 (52)
T d1aipc1 1 SQMELIKKLREATGAGMMDVKRALEDA------GWDEEKAVQLLR 39 (52)
T ss_dssp CHHHHHHHHHHHHCCCHHHHHHHHHHT------TTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCHHHHHHHHHHC------CCCHHHHHHHHH
T ss_conf 918899999998698799999999983------999999999999
No 8
>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=76.57 E-value=0.97 Score=22.54 Aligned_cols=37 Identities=24% Similarity=0.262 Sum_probs=27.6
Q ss_pred CHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHCCCHHHHHHHH
Q ss_conf 3357877677659988999999863797766099989999999
Q gi|254780144|r 71 KIAVIKEVRAITDLGLKEAKELVESAPKSLKTGLSKDEANEMK 113 (126)
Q Consensus 71 Ki~vIK~vR~it~LgLkEAK~lVe~~P~~ike~v~keeAE~ik 113 (126)
-...||.+|+.||.|+++.|...+.+- -.-+.|.++-
T Consensus 4 s~~~iK~LR~~Tgag~~dCKkAL~e~~------gD~ekA~e~L 40 (54)
T d1efub3 4 TASLVKELRERTGAGMMDCKKALTEAN------GDIELAIENM 40 (54)
T ss_dssp CHHHHHHHHHHHCCCHHHHHHHHHHTT------TCHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHCC------CCHHHHHHHH
T ss_conf 899999999986987999999999838------9999999999
No 9
>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}
Probab=73.27 E-value=1.3 Score=21.73 Aligned_cols=36 Identities=14% Similarity=0.170 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHCCCHHHHHHH
Q ss_conf 335787767765998899999986379776609998999999
Q gi|254780144|r 71 KIAVIKEVRAITDLGLKEAKELVESAPKSLKTGLSKDEANEM 112 (126)
Q Consensus 71 Ki~vIK~vR~it~LgLkEAK~lVe~~P~~ike~v~keeAE~i 112 (126)
-...||.+|+.||.|+++.|...+.+- -+-+.|-++
T Consensus 4 s~~lvk~LRe~Tga~~~dcKkAL~e~~------gD~ekA~e~ 39 (56)
T d1xb2b1 4 SKELLMKLRRKTGYSFINCKKALETCG------GDLKQAESW 39 (56)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHTT------TCHHHHHHH
T ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHCC------CCHHHHHHH
T ss_conf 499999999986988999999999838------999999999
No 10
>d1vqol1 c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=24.18 E-value=21 Score=14.50 Aligned_cols=16 Identities=44% Similarity=0.709 Sum_probs=13.1
Q ss_pred HHHHHHHHHCCCEEEE
Q ss_conf 9999999974857993
Q gi|254780144|r 110 NEMKKKLEDAGATVEL 125 (126)
Q Consensus 110 E~ik~~Le~aGa~Vei 125 (126)
+..+.++|.+|++|+|
T Consensus 127 ~sA~ekIe~aGG~v~l 142 (150)
T d1vqol1 127 EGAREKVEGAGGSVEL 142 (150)
T ss_dssp HHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHCCCEEEE
T ss_conf 9999999985998999
No 11
>d1r8da_ a.6.1.3 (A:) Multidrug transporter activator MtaN {Bacillus subtilis [TaxId: 1423]}
Probab=23.98 E-value=21 Score=14.47 Aligned_cols=27 Identities=19% Similarity=0.334 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHCC
Q ss_conf 4335787767765998899999986379
Q gi|254780144|r 70 KKIAVIKEVRAITDLGLKEAKELVESAP 97 (126)
Q Consensus 70 ~Ki~vIK~vR~it~LgLkEAK~lVe~~P 97 (126)
.++..|+..|. .|++|.|.+++++...
T Consensus 47 ~~l~~I~~lr~-~G~sl~eI~~~l~~~~ 73 (109)
T d1r8da_ 47 ERLQQILFFKE-IGFRLDEIKEMLDHPN 73 (109)
T ss_dssp HHHHHHHHHHH-TTCCHHHHHHHHHCTT
T ss_pred HHHHHHHHHHH-CCCCHHHHHHHHHCCC
T ss_conf 99999999998-6999999999984537
No 12
>d1jmsa3 a.60.12.1 (A:243-302) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.55 E-value=25 Score=14.05 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHCCHHHH
Q ss_conf 43357877677659988999999863797766
Q gi|254780144|r 70 KKIAVIKEVRAITDLGLKEAKELVESAPKSLK 101 (126)
Q Consensus 70 ~Ki~vIK~vR~it~LgLkEAK~lVe~~P~~ik 101 (126)
.|...++..-.|.|.|.+-|+++++..=++|.
T Consensus 2 er~~~l~~f~~I~GvGp~~A~~l~~~Gi~ti~ 33 (60)
T d1jmsa3 2 ERYKSFKLFTSVFGVGLKTAEKWFRMGFRTLS 33 (60)
T ss_dssp HHHHHHHHHHTSTTCCHHHHHHHHHTTCCSHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHH
T ss_conf 07589999861163229999999993899899
No 13
>d1in0a2 d.58.49.1 (A:90-163) Hypothetical protein HI1034 {Haemophilus influenzae [TaxId: 727]}
Probab=20.14 E-value=25 Score=14.00 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=20.4
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf 76609998999999999997485799
Q gi|254780144|r 99 SLKTGLSKDEANEMKKKLEDAGATVE 124 (126)
Q Consensus 99 ~ike~v~keeAE~ik~~Le~aGa~Ve 124 (126)
.++.|+++|.|.+|-+.+.+.+-+|.
T Consensus 8 ~l~~GI~~e~AKkI~k~IK~~k~KVq 33 (74)
T d1in0a2 8 KLKQGIETEMAKKITKLVKDSKIKVQ 33 (74)
T ss_dssp EECCSCCHHHHHHHHHHHHHHTCSEE
T ss_pred EEECCCCHHHHHHHHHHHHHCCCCCE
T ss_conf 72127598999999999972388415
Done!