RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780144|ref|YP_003064557.1| 50S ribosomal protein L12P
[Candidatus Liberibacter asiaticus str. psy62]
         (126 letters)



>3i8i_J Elongation Complex Of The 70s Ribosome With Three Trnas And
           Mrna. This Entry 3i8i Contains 50s Ribosomal Subnit.
           {Thermus thermophilus HB8} (J:)
          Length = 125

 Score =  106 bits (267), Expect = 9e-25
 Identities = 67/125 (53%), Positives = 87/125 (69%), Gaps = 4/125 (3%)

Query: 3   NIESIVEKLSSLTLIEAAELSKRLEKEWGVSASAPVSVVAPVAAEAG-SAASEKTEFEVV 61
           +IE I E+LS  T++E  +L   L++ WGV+A+APV+V A  AA A  + A EKTEF+V+
Sbjct: 4   DIERIKEELSQATVLELKQLIDALKEAWGVTAAAPVAVAAAPAAGAAAAPAEEKTEFDVI 63

Query: 62  LKGFDDPKKKIAVIKEVRAITDLGLKEAKELVESAPKSLKTGLSKDEANEMKKKLEDAGA 121
           LK      KK+ VIKE+RAIT LGLKEAK+L E     +K G+SK EA E+KKKLE  GA
Sbjct: 64  LKEAGA--KKLEVIKELRAITGLGLKEAKDLAE-KGGPVKEGVSKQEAEEIKKKLEAVGA 120

Query: 122 TVELR 126
            VEL+
Sbjct: 121 VVELK 125


>2zjq_5 50S ribosomal protein L7/L12; ribosome, ribosomal subunit,
           thiopeptide antibiotics, complex, translational
           regulation, molecular switch; 3.30A {Deinococcus
           radiodurans} (5:)
          Length = 122

 Score =  103 bits (260), Expect = 7e-24
 Identities = 59/124 (47%), Positives = 82/124 (66%), Gaps = 5/124 (4%)

Query: 3   NIESIVEKLSSLTLIEAAELSKRLEKEWGVSASAPVSVVAPVAAEAGSAASEKTEFEVVL 62
           + ++++++L  LT++E A+L   L++ WGV+A+  VS     A  A  AA EKTEF+VVL
Sbjct: 4   DKQALIDQLGQLTIMELADLIDGLKETWGVTAAVAVSGGG--AGAASPAAEEKTEFDVVL 61

Query: 63  KGFDDPKKKIAVIKEVRAITDLGLKEAKELVESAPKSLKTGLSKDEANEMKKKLEDAGAT 122
                   KI VIKE+R IT LGLKEAK++ E     LK G++KDEA +MK +LE AGA 
Sbjct: 62  IDAGA--SKINVIKEIRGITGLGLKEAKDMSE-KGGVLKEGVAKDEAEKMKAQLEAAGAR 118

Query: 123 VELR 126
           VEL+
Sbjct: 119 VELK 122


>1ctf_A Ribosomal protein L7/L12; 1.70A {Escherichia coli} (A:)
          Length = 74

 Score = 79.3 bits (196), Expect = 2e-16
 Identities = 47/76 (61%), Positives = 58/76 (76%), Gaps = 2/76 (2%)

Query: 51  AASEKTEFEVVLKGFDDPKKKIAVIKEVRAITDLGLKEAKELVESAPKSLKTGLSKDEAN 110
           AA EKTEF+V+LK       K+AVIK VR  T LGLKEAK+LVESAP +LK G+SKD+A 
Sbjct: 1   AAEEKTEFDVILKAAGA--NKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAE 58

Query: 111 EMKKKLEDAGATVELR 126
            +KK LE+AGA VE++
Sbjct: 59  ALKKALEEAGAEVEVK 74


>1rqu_A L8, 50S ribosomal protein L7/L12; ribosome,; NMR
           {Escherichia coli} (A:41-120)
          Length = 80

 Score = 78.6 bits (194), Expect = 3e-16
 Identities = 49/82 (59%), Positives = 60/82 (73%), Gaps = 2/82 (2%)

Query: 45  AAEAGSAASEKTEFEVVLKGFDDPKKKIAVIKEVRAITDLGLKEAKELVESAPKSLKTGL 104
           AA    AA EKTEF+V+LK       K+AVIK VR  T LGLKEAK+LVESAP +LK G+
Sbjct: 1   AAGPVEAAEEKTEFDVILKAAGA--NKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGV 58

Query: 105 SKDEANEMKKKLEDAGATVELR 126
           SKD+A  +KK LE+AGA VE++
Sbjct: 59  SKDDAEALKKALEEAGAEVEVK 80


>2ftc_E Mitochondrial ribosomal protein L7/12, mitochondrial 39S
           ribosomal protein L3; mitochondrial ribosome, large
           ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus}
           (E:66-137)
          Length = 72

 Score = 73.9 bits (182), Expect = 7e-15
 Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 2/72 (2%)

Query: 55  KTEFEVVLKGFDDPKKKIAVIKEVR-AITDLGLKEAKELVESAPKSLKTGLSKDEANEMK 113
           +T F V L        K+ +IKE++  +  + L +AK+LVES P+ +K  ++K EA ++K
Sbjct: 1   RTHFTVRLTEAKP-VDKVKLIKEIKNYVQGINLVQAKKLVESLPQEIKANVAKAEAEKIK 59

Query: 114 KKLEDAGATVEL 125
             LE  G TV L
Sbjct: 60  AALEAVGGTVVL 71


>1dd3_A 50S ribosomal protein L7/L12; dimer formation, flexibility,
           hinge region, four-helix- bundle, five-helix- bundle,
           alpha-beta structure; 2.00A {Thermotoga maritima}
           (A:58-128)
          Length = 71

 Score = 68.5 bits (168), Expect = 3e-13
 Identities = 45/73 (61%), Positives = 54/73 (73%), Gaps = 5/73 (6%)

Query: 57  EFEVVLKGFDDPKKKIAVIKEVRAITDLGLKEAKELVESAPKS---LKTGLSKDEANEMK 113
           EF+VVLK F     KI VIK VR IT LGLKEAK+LVE A      +K+G+SK+EA E+K
Sbjct: 1   EFDVVLKSFGQ--NKIQVIKVVREITGLGLKEAKDLVEKAGSPDAVIKSGVSKEEAEEIK 58

Query: 114 KKLEDAGATVELR 126
           KKLE+AGA VEL+
Sbjct: 59  KKLEEAGAEVELK 71


>1dd3_A 50S ribosomal protein L7/L12; dimer formation,
          flexibility, hinge region, four-helix- bundle,
          five-helix- bundle, alpha-beta structure; 2.00A
          {Thermotoga maritima} (A:1-57)
          Length = 57

 Score = 45.2 bits (107), Expect = 3e-06
 Identities = 26/56 (46%), Positives = 37/56 (66%), Gaps = 2/56 (3%)

Query: 3  NIESIVEKLSSLTLIEAAELSKRLEKEWGVSASAPVSV--VAPVAAEAGSAASEKT 56
           I+ I+E +  LT+ E AEL K+LE ++GV+A+APV+V       A AG+A  EKT
Sbjct: 2  TIDEIIEAIEKLTVSELAELVKKLEDKFGVTAAAPVAVAAAPVAGAAAGAAQEEKT 57


>2ftc_E Mitochondrial ribosomal protein L7/12, mitochondrial 39S
          ribosomal protein L3; mitochondrial ribosome, large
          ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus}
          (E:1-65)
          Length = 65

 Score = 31.4 bits (71), Expect = 0.040
 Identities = 14/58 (24%), Positives = 31/58 (53%)

Query: 4  IESIVEKLSSLTLIEAAELSKRLEKEWGVSASAPVSVVAPVAAEAGSAASEKTEFEVV 61
          I+ +V+ ++SLTL+E ++L++ L+K   +     + +   V   A +  + +   E V
Sbjct: 3  IQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLMPMGGMVPGAAPAPTAPEAAEEDV 60


>1dd4_C 50S ribosomal protein L7/L12; dimer formation,
          flexibility, hinge region, four-helix- bundle,
          five-helix- bundle, alpha-beta structure; HET: TBR;
          2.40A {Thermotoga maritima} (C:)
          Length = 40

 Score = 31.6 bits (71), Expect = 0.041
 Identities = 19/38 (50%), Positives = 29/38 (76%)

Query: 3  NIESIVEKLSSLTLIEAAELSKRLEKEWGVSASAPVSV 40
           I+ I+E +  LT+ E AEL K+LE ++GV+A+APV+V
Sbjct: 2  TIDEIIEAIEKLTVSELAELVKKLEDKFGVTAAAPVAV 39


>3l24_A XAA-Pro dipeptidase; PITA-bread, detoxification, hydrolase,
           manganese, metal-binding, metalloprotease, protease;
           2.30A {Alteromonas SP} (A:160-517)
          Length = 358

 Score = 27.3 bits (59), Expect = 0.68
 Identities = 4/22 (18%), Positives = 8/22 (36%)

Query: 21  ELSKRLEKEWGVSASAPVSVVA 42
            L +R      + A  P+  + 
Sbjct: 333 ILVRRRTLSPILIAVTPMPAIT 354


>3bqx_A Glyoxalase-related enzyme; VOC superfamily, PSI-2,
           structural genomics, protein structure initiative; 1.40A
           {Fulvimarina pelagi HTCC2506} (A:67-127)
          Length = 61

 Score = 24.6 bits (54), Expect = 5.3
 Identities = 4/20 (20%), Positives = 10/20 (50%)

Query: 105 SKDEANEMKKKLEDAGATVE 124
           ++ E   + ++L  AG  + 
Sbjct: 13  AETEVAPLXERLVAAGGQLL 32


>1yj7_A ESCJ; mixed alpha/beta, extended linker, protein transport;
           1.80A {Escherichia coli} (A:1-68)
          Length = 68

 Score = 23.8 bits (52), Expect = 7.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 98  KSLKTGLSKDEANEMKKKLEDAGATVE 124
           + L TGL++ EAN+M+  L      V 
Sbjct: 3   EQLYTGLTEKEANQMQALLLSNDVNVS 29


>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring
           finger, zinc-binding protein, ubiquitin ligase,
           antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A
           2r1z_A (A:1-103,A:194-210)
          Length = 120

 Score = 23.9 bits (51), Expect = 7.8
 Identities = 4/22 (18%), Positives = 9/22 (40%)

Query: 102 TGLSKDEANEMKKKLEDAGATV 123
           +GLS ++   + +      A  
Sbjct: 8   SGLSSEQQKMLSELAVILKAKK 29


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.304    0.122    0.305 

Gapped
Lambda     K      H
   0.267   0.0554    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 803,773
Number of extensions: 32180
Number of successful extensions: 114
Number of sequences better than 10.0: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 34
Length of query: 126
Length of database: 4,956,049
Length adjustment: 75
Effective length of query: 51
Effective length of database: 2,420,674
Effective search space: 123454374
Effective search space used: 123454374
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 50 (23.4 bits)