RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780144|ref|YP_003064557.1| 50S ribosomal protein L12P [Candidatus Liberibacter asiaticus str. psy62] (126 letters) >3i8i_J Elongation Complex Of The 70s Ribosome With Three Trnas And Mrna. This Entry 3i8i Contains 50s Ribosomal Subnit. {Thermus thermophilus HB8} (J:) Length = 125 Score = 106 bits (267), Expect = 9e-25 Identities = 67/125 (53%), Positives = 87/125 (69%), Gaps = 4/125 (3%) Query: 3 NIESIVEKLSSLTLIEAAELSKRLEKEWGVSASAPVSVVAPVAAEAG-SAASEKTEFEVV 61 +IE I E+LS T++E +L L++ WGV+A+APV+V A AA A + A EKTEF+V+ Sbjct: 4 DIERIKEELSQATVLELKQLIDALKEAWGVTAAAPVAVAAAPAAGAAAAPAEEKTEFDVI 63 Query: 62 LKGFDDPKKKIAVIKEVRAITDLGLKEAKELVESAPKSLKTGLSKDEANEMKKKLEDAGA 121 LK KK+ VIKE+RAIT LGLKEAK+L E +K G+SK EA E+KKKLE GA Sbjct: 64 LKEAGA--KKLEVIKELRAITGLGLKEAKDLAE-KGGPVKEGVSKQEAEEIKKKLEAVGA 120 Query: 122 TVELR 126 VEL+ Sbjct: 121 VVELK 125 >2zjq_5 50S ribosomal protein L7/L12; ribosome, ribosomal subunit, thiopeptide antibiotics, complex, translational regulation, molecular switch; 3.30A {Deinococcus radiodurans} (5:) Length = 122 Score = 103 bits (260), Expect = 7e-24 Identities = 59/124 (47%), Positives = 82/124 (66%), Gaps = 5/124 (4%) Query: 3 NIESIVEKLSSLTLIEAAELSKRLEKEWGVSASAPVSVVAPVAAEAGSAASEKTEFEVVL 62 + ++++++L LT++E A+L L++ WGV+A+ VS A A AA EKTEF+VVL Sbjct: 4 DKQALIDQLGQLTIMELADLIDGLKETWGVTAAVAVSGGG--AGAASPAAEEKTEFDVVL 61 Query: 63 KGFDDPKKKIAVIKEVRAITDLGLKEAKELVESAPKSLKTGLSKDEANEMKKKLEDAGAT 122 KI VIKE+R IT LGLKEAK++ E LK G++KDEA +MK +LE AGA Sbjct: 62 IDAGA--SKINVIKEIRGITGLGLKEAKDMSE-KGGVLKEGVAKDEAEKMKAQLEAAGAR 118 Query: 123 VELR 126 VEL+ Sbjct: 119 VELK 122 >1ctf_A Ribosomal protein L7/L12; 1.70A {Escherichia coli} (A:) Length = 74 Score = 79.3 bits (196), Expect = 2e-16 Identities = 47/76 (61%), Positives = 58/76 (76%), Gaps = 2/76 (2%) Query: 51 AASEKTEFEVVLKGFDDPKKKIAVIKEVRAITDLGLKEAKELVESAPKSLKTGLSKDEAN 110 AA EKTEF+V+LK K+AVIK VR T LGLKEAK+LVESAP +LK G+SKD+A Sbjct: 1 AAEEKTEFDVILKAAGA--NKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAE 58 Query: 111 EMKKKLEDAGATVELR 126 +KK LE+AGA VE++ Sbjct: 59 ALKKALEEAGAEVEVK 74 >1rqu_A L8, 50S ribosomal protein L7/L12; ribosome,; NMR {Escherichia coli} (A:41-120) Length = 80 Score = 78.6 bits (194), Expect = 3e-16 Identities = 49/82 (59%), Positives = 60/82 (73%), Gaps = 2/82 (2%) Query: 45 AAEAGSAASEKTEFEVVLKGFDDPKKKIAVIKEVRAITDLGLKEAKELVESAPKSLKTGL 104 AA AA EKTEF+V+LK K+AVIK VR T LGLKEAK+LVESAP +LK G+ Sbjct: 1 AAGPVEAAEEKTEFDVILKAAGA--NKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGV 58 Query: 105 SKDEANEMKKKLEDAGATVELR 126 SKD+A +KK LE+AGA VE++ Sbjct: 59 SKDDAEALKKALEEAGAEVEVK 80 >2ftc_E Mitochondrial ribosomal protein L7/12, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} (E:66-137) Length = 72 Score = 73.9 bits (182), Expect = 7e-15 Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 2/72 (2%) Query: 55 KTEFEVVLKGFDDPKKKIAVIKEVR-AITDLGLKEAKELVESAPKSLKTGLSKDEANEMK 113 +T F V L K+ +IKE++ + + L +AK+LVES P+ +K ++K EA ++K Sbjct: 1 RTHFTVRLTEAKP-VDKVKLIKEIKNYVQGINLVQAKKLVESLPQEIKANVAKAEAEKIK 59 Query: 114 KKLEDAGATVEL 125 LE G TV L Sbjct: 60 AALEAVGGTVVL 71 >1dd3_A 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; 2.00A {Thermotoga maritima} (A:58-128) Length = 71 Score = 68.5 bits (168), Expect = 3e-13 Identities = 45/73 (61%), Positives = 54/73 (73%), Gaps = 5/73 (6%) Query: 57 EFEVVLKGFDDPKKKIAVIKEVRAITDLGLKEAKELVESAPKS---LKTGLSKDEANEMK 113 EF+VVLK F KI VIK VR IT LGLKEAK+LVE A +K+G+SK+EA E+K Sbjct: 1 EFDVVLKSFGQ--NKIQVIKVVREITGLGLKEAKDLVEKAGSPDAVIKSGVSKEEAEEIK 58 Query: 114 KKLEDAGATVELR 126 KKLE+AGA VEL+ Sbjct: 59 KKLEEAGAEVELK 71 >1dd3_A 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; 2.00A {Thermotoga maritima} (A:1-57) Length = 57 Score = 45.2 bits (107), Expect = 3e-06 Identities = 26/56 (46%), Positives = 37/56 (66%), Gaps = 2/56 (3%) Query: 3 NIESIVEKLSSLTLIEAAELSKRLEKEWGVSASAPVSV--VAPVAAEAGSAASEKT 56 I+ I+E + LT+ E AEL K+LE ++GV+A+APV+V A AG+A EKT Sbjct: 2 TIDEIIEAIEKLTVSELAELVKKLEDKFGVTAAAPVAVAAAPVAGAAAGAAQEEKT 57 >2ftc_E Mitochondrial ribosomal protein L7/12, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} (E:1-65) Length = 65 Score = 31.4 bits (71), Expect = 0.040 Identities = 14/58 (24%), Positives = 31/58 (53%) Query: 4 IESIVEKLSSLTLIEAAELSKRLEKEWGVSASAPVSVVAPVAAEAGSAASEKTEFEVV 61 I+ +V+ ++SLTL+E ++L++ L+K + + + V A + + + E V Sbjct: 3 IQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLMPMGGMVPGAAPAPTAPEAAEEDV 60 >1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} (C:) Length = 40 Score = 31.6 bits (71), Expect = 0.041 Identities = 19/38 (50%), Positives = 29/38 (76%) Query: 3 NIESIVEKLSSLTLIEAAELSKRLEKEWGVSASAPVSV 40 I+ I+E + LT+ E AEL K+LE ++GV+A+APV+V Sbjct: 2 TIDEIIEAIEKLTVSELAELVKKLEDKFGVTAAAPVAV 39 >3l24_A XAA-Pro dipeptidase; PITA-bread, detoxification, hydrolase, manganese, metal-binding, metalloprotease, protease; 2.30A {Alteromonas SP} (A:160-517) Length = 358 Score = 27.3 bits (59), Expect = 0.68 Identities = 4/22 (18%), Positives = 8/22 (36%) Query: 21 ELSKRLEKEWGVSASAPVSVVA 42 L +R + A P+ + Sbjct: 333 ILVRRRTLSPILIAVTPMPAIT 354 >3bqx_A Glyoxalase-related enzyme; VOC superfamily, PSI-2, structural genomics, protein structure initiative; 1.40A {Fulvimarina pelagi HTCC2506} (A:67-127) Length = 61 Score = 24.6 bits (54), Expect = 5.3 Identities = 4/20 (20%), Positives = 10/20 (50%) Query: 105 SKDEANEMKKKLEDAGATVE 124 ++ E + ++L AG + Sbjct: 13 AETEVAPLXERLVAAGGQLL 32 >1yj7_A ESCJ; mixed alpha/beta, extended linker, protein transport; 1.80A {Escherichia coli} (A:1-68) Length = 68 Score = 23.8 bits (52), Expect = 7.3 Identities = 10/27 (37%), Positives = 15/27 (55%) Query: 98 KSLKTGLSKDEANEMKKKLEDAGATVE 124 + L TGL++ EAN+M+ L V Sbjct: 3 EQLYTGLTEKEANQMQALLLSNDVNVS 29 >2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin ligase, antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A (A:1-103,A:194-210) Length = 120 Score = 23.9 bits (51), Expect = 7.8 Identities = 4/22 (18%), Positives = 9/22 (40%) Query: 102 TGLSKDEANEMKKKLEDAGATV 123 +GLS ++ + + A Sbjct: 8 SGLSSEQQKMLSELAVILKAKK 29 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.304 0.122 0.305 Gapped Lambda K H 0.267 0.0554 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 803,773 Number of extensions: 32180 Number of successful extensions: 114 Number of sequences better than 10.0: 1 Number of HSP's gapped: 101 Number of HSP's successfully gapped: 34 Length of query: 126 Length of database: 4,956,049 Length adjustment: 75 Effective length of query: 51 Effective length of database: 2,420,674 Effective search space: 123454374 Effective search space used: 123454374 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 43 (21.9 bits) S2: 50 (23.4 bits)