RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780144|ref|YP_003064557.1| 50S ribosomal protein L12P
[Candidatus Liberibacter asiaticus str. psy62]
(126 letters)
>gi|226355461|ref|YP_002785201.1|(51-121:121) putative 50S ribosomal
protein L7/L12 [Deinococcus deserti VCD115]
gi|226317451|gb|ACO45447.1| putative 50S ribosomal
protein L7/L12 [Deinococcus deserti VCD115] E=1e-26
s/c=1.72 id=88% cov=101%
Length = 71
Score = 73.1 bits (180), Expect = 7e-15
Identities = 42/73 (57%), Positives = 52/73 (71%), Gaps = 3/73 (4%)
Query: 54 EKTEFEVVLKGFDDPKKKIAVIKEVRAITDLGLKEAKELVESAPKSLKTGLSKDEANEMK 113
EKTEF+VVL KI VIKE+RAIT LGLKEAK++ E LK G+SKD+A ++K
Sbjct: 2 EKTEFDVVLVDAGA--SKINVIKEIRAITGLGLKEAKDMSEKGGV-LKEGISKDDAEKIK 58
Query: 114 KKLEDAGATVELR 126
+LE AGA VEL+
Sbjct: 59 AQLEGAGAKVELK 71
>d1ctfa_ d.45.1.1 (A:) Ribosomal protein L7/12, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 68
Score = 72.4 bits (178), Expect = 1e-14
Identities = 42/70 (60%), Positives = 53/70 (75%), Gaps = 2/70 (2%)
Query: 57 EFEVVLKGFDDPKKKIAVIKEVRAITDLGLKEAKELVESAPKSLKTGLSKDEANEMKKKL 116
EF+V+LK K+AVIK VR T LGLKEAK+LVESAP +LK G+SKD+A +KK L
Sbjct: 1 EFDVILKAAGA--NKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKAL 58
Query: 117 EDAGATVELR 126
E+AGA VE++
Sbjct: 59 EEAGAEVEVK 68
>d1dd3a2 d.45.1.1 (A:58-128) Ribosomal protein L7/12, C-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 71
Score = 70.8 bits (174), Expect = 4e-14
Identities = 45/73 (61%), Positives = 54/73 (73%), Gaps = 5/73 (6%)
Query: 57 EFEVVLKGFDDPKKKIAVIKEVRAITDLGLKEAKELVESAPKS---LKTGLSKDEANEMK 113
EF+VVLK F KI VIK VR IT LGLKEAK+LVE A +K+G+SK+EA E+K
Sbjct: 1 EFDVVLKSFGQ--NKIQVIKVVREITGLGLKEAKDLVEKAGSPDAVIKSGVSKEEAEEIK 58
Query: 114 KKLEDAGATVELR 126
KKLE+AGA VEL+
Sbjct: 59 KKLEEAGAEVELK 71
>d1dd3a1 a.108.1.1 (A:1-57) Ribosomal protein L7/12,
oligomerisation (N-terminal) domain {Thermotoga
maritima [TaxId: 2336]}
Length = 57
Score = 41.1 bits (96), Expect = 3e-05
Identities = 23/52 (44%), Positives = 36/52 (69%)
Query: 3 NIESIVEKLSSLTLIEAAELSKRLEKEWGVSASAPVSVVAPVAAEAGSAASE 54
I+ I+E + LT+ E AEL K+LE ++GV+A+APV+V A A A + A++
Sbjct: 2 TIDEIIEAIEKLTVSELAELVKKLEDKFGVTAAAPVAVAAAPVAGAAAGAAQ 53
>d2gyc31 a.108.1.1 (3:2-48) Ribosomal protein L7/12,
oligomerisation (N-terminal) domain {Escherichia coli
[TaxId: 562]}
Length = 47
Score = 28.7 bits (64), Expect = 0.15
Identities = 14/44 (31%), Positives = 30/44 (68%)
Query: 5 ESIVEKLSSLTLIEAAELSKRLEKEWGVSASAPVSVVAPVAAEA 48
+ I+E ++++++++ EL +E+++GVSA+A V+V A A
Sbjct: 4 DQIIEAVAAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPVEAA 47
>d1u4na_ c.69.1.2 (A:) Carboxylesterase {Alicyclobacillus
acidocaldarius [TaxId: 405212]}
Length = 308
Score = 28.3 bits (61), Expect = 0.21
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 107 DEANEMKKKLEDAGATVELR 126
D + L AG VE+
Sbjct: 254 DVGKLYAEALNKAGVKVEIE 273
>d1jkma_ c.69.1.2 (A:) Carboxylesterase {Bacillus subtilis,
brefeldin A esterase [TaxId: 1423]}
Length = 358
Score = 28.2 bits (61), Expect = 0.21
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 107 DEANEMKKKLEDAGATVELR 126
DE ++L AG V R
Sbjct: 300 DEGIAFARRLARAGVDVAAR 319
>d1jjia_ c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 311
Score = 27.8 bits (60), Expect = 0.32
Identities = 5/20 (25%), Positives = 7/20 (35%)
Query: 107 DEANEMKKKLEDAGATVELR 126
DE + L AG +
Sbjct: 259 DEGEVFGQMLRRAGVEASIV 278
>d1lzla_ c.69.1.2 (A:) Heroin esterase {Rhodococcus sp. [TaxId:
1831]}
Length = 317
Score = 27.5 bits (59), Expect = 0.34
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 107 DEANEMKKKLEDAGATVELR 126
DE E +L AG +VEL
Sbjct: 263 DEGIEYALRLLQAGVSVELH 282
>d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 238
Score = 26.8 bits (58), Expect = 0.68
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 23 SKRLEKEWGVSASAPVSVVAPVAAEAGSAASEKTEFEVVLKG--FDDPKKKIAVIKEVRA 80
+K+L +G+ A PV EA AAS+ V+K + K +K V +
Sbjct: 8 AKQLFARYGLPA--PVGYACTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGVKVVNS 65
Query: 81 ITD 83
D
Sbjct: 66 KED 68
>d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid
dehydrogenase, PP module {Thermus thermophilus [TaxId:
274]}
Length = 362
Score = 26.0 bits (56), Expect = 1.1
Identities = 12/55 (21%), Positives = 28/55 (50%)
Query: 63 KGFDDPKKKIAVIKEVRAITDLGLKEAKELVESAPKSLKTGLSKDEANEMKKKLE 117
+G + + + V +E+RA + GLKEA+E P+ + + ++ + ++
Sbjct: 302 RGLWNEEWEEDVREEIRAELERGLKEAEEAGPVPPEWMFEDVFAEKPWHLLRQEA 356
>d1chma2 d.127.1.1 (A:157-402) Creatinase, catalytic (C-terminal)
domain {Pseudomonas putida [TaxId: 303]}
Length = 246
Score = 25.8 bits (55), Expect = 1.3
Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 8/51 (15%)
Query: 72 IAVIKEVRAITDLGLKEAKELVESAPKSLKTGLSKDE-ANEMKKKLEDAGA 121
+I+ I D+G E + + + E A + + A A
Sbjct: 8 HVMIRHGARIADIGGAAVVEAL-------GDQVPEYEVALHATQAMVRAIA 51
>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase
{Acinetobacter calcoaceticus [TaxId: 471]}
Length = 450
Score = 25.8 bits (55), Expect = 1.4
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 46 AEAGSAASEKTEFEVVLKGFDDP 68
++ A SE + +V+L + P
Sbjct: 7 SQFAKAKSENFDKKVILSNLNKP 29
>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 405
Score = 25.3 bits (55), Expect = 1.9
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 61 VLKGFDDPKKKIAVIKEVRAITD 83
VLK + + V A+TD
Sbjct: 383 VLKNVGSEQALEEARQRVAALTD 405
>d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 365
Score = 25.2 bits (54), Expect = 2.0
Identities = 10/56 (17%), Positives = 26/56 (46%)
Query: 63 KGFDDPKKKIAVIKEVRAITDLGLKEAKELVESAPKSLKTGLSKDEANEMKKKLED 118
KG +++ VI++ + +K+A E + L + + ++ +K++ E
Sbjct: 303 KGLWSEEEENNVIEQAKEEIKEAIKKADETPKQKVTDLISIMFEELPFNLKEQYEI 358
>d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid
dehydrogenase, PP module {Human (Homo sapiens) [TaxId:
9606]}
Length = 395
Score = 24.8 bits (53), Expect = 2.6
Identities = 10/62 (16%), Positives = 30/62 (48%)
Query: 63 KGFDDPKKKIAVIKEVRAITDLGLKEAKELVESAPKSLKTGLSKDEANEMKKKLEDAGAT 122
+G+ D +++ A K+ R ++A+ + P L + + ++ +++K+ E
Sbjct: 321 QGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARH 380
Query: 123 VE 124
++
Sbjct: 381 LQ 382
>d1vlia2 c.1.10.6 (A:2-296) Spore coat polysaccharide biosynthesis
protein SpsE, N-terminal domain {Bacillus subtilis
[TaxId: 1423]}
Length = 295
Score = 24.6 bits (52), Expect = 2.7
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 84 LGLKEAKELVES---APKSLKTGLSKDEANEMKKK 115
L E KE+V+ LK G++K + ++
Sbjct: 251 LNPDELKEMVDGIRKTEAELKQGITKPVSEKLLGS 285
>d1y5ia2 c.81.1.1 (A:1-1074) Respiratory nitrate reductase 1 alpha
chain {Escherichia coli [TaxId: 562]}
Length = 1074
Score = 24.4 bits (52), Expect = 3.2
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 18 EAAELSKRLE-KEWGVSASAPVSVVAPVAAEAGSAASEKTEFEVVLKGFDDPKKK 71
E L K K G + P+ A AAE + +T +V +K + +
Sbjct: 923 EMDLLRKLNYTKAEGPAKGQPMLNTAIDAAEMILTLAPETNGQVAVKAWAALSEF 977
>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia
coli [TaxId: 562]}
Length = 416
Score = 23.8 bits (51), Expect = 4.6
Identities = 5/23 (21%), Positives = 8/23 (34%)
Query: 61 VLKGFDDPKKKIAVIKEVRAITD 83
VL +D + +V I
Sbjct: 388 VLDSINDEAVIERIKGKVLDICA 410
>d1d4aa_ c.23.5.3 (A:) NAD(P)H:quinone reductase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 273
Score = 23.9 bits (51), Expect = 5.1
Identities = 4/26 (15%), Positives = 7/26 (26%)
Query: 101 KTGLSKDEANEMKKKLEDAGATVELR 126
+T + L+ G V
Sbjct: 14 RTSFNYAMKEAAAAALKKKGWEVVES 39
>d1imva_ e.1.1.1 (A:) Pigment epithelium-derived factor, PEDF
{Human (Homo sapiens) [TaxId: 9606]}
Length = 383
Score = 23.3 bits (49), Expect = 6.4
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 66 DDPKKKIAVIKEVRAITDLGLKEAKELVESAPKS 99
+DP K+ V K A+++ G + +P +
Sbjct: 8 EDPFFKVPVNKLAAAVSNFGYDLYRVRSSMSPTT 41
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase,
transmembrane domain M {Rabbit (Oryctolagus cuniculus)
[TaxId: 9986]}
Length = 472
Score = 23.1 bits (49), Expect = 7.4
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 87 KEAKELVESAPKSLKTGLSKDEANEMKKK 115
K +E + S TGL+ D+ +K
Sbjct: 7 KSTEECLAYFGVSETTGLTPDQVKRHLEK 35
>d1zavu1 a.108.1.1 (U:1-30) Ribosomal protein L7/12,
oligomerisation (N-terminal) domain {Thermotoga
maritima [TaxId: 2336]}
Length = 30
Score = 23.1 bits (49), Expect = 8.5
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 3 NIESIVEKLSSLTLIEAAELSKRLEKEWG 31
I+ I+E + LT+ E AEL K+LE ++G
Sbjct: 2 TIDEIIEAIEKLTVSELAELVKKLEDKFG 30
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.304 0.122 0.305
Gapped
Lambda K H
0.267 0.0734 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 403,242
Number of extensions: 17358
Number of successful extensions: 74
Number of sequences better than 10.0: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 28
Length of query: 126
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 51
Effective length of database: 1,377,846
Effective search space: 70270146
Effective search space used: 70270146
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 48 (22.3 bits)