RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780144|ref|YP_003064557.1| 50S ribosomal protein L12P [Candidatus Liberibacter asiaticus str. psy62] (126 letters) >gi|226355461|ref|YP_002785201.1|(51-121:121) putative 50S ribosomal protein L7/L12 [Deinococcus deserti VCD115] gi|226317451|gb|ACO45447.1| putative 50S ribosomal protein L7/L12 [Deinococcus deserti VCD115] E=1e-26 s/c=1.72 id=88% cov=101% Length = 71 Score = 73.1 bits (180), Expect = 7e-15 Identities = 42/73 (57%), Positives = 52/73 (71%), Gaps = 3/73 (4%) Query: 54 EKTEFEVVLKGFDDPKKKIAVIKEVRAITDLGLKEAKELVESAPKSLKTGLSKDEANEMK 113 EKTEF+VVL KI VIKE+RAIT LGLKEAK++ E LK G+SKD+A ++K Sbjct: 2 EKTEFDVVLVDAGA--SKINVIKEIRAITGLGLKEAKDMSEKGGV-LKEGISKDDAEKIK 58 Query: 114 KKLEDAGATVELR 126 +LE AGA VEL+ Sbjct: 59 AQLEGAGAKVELK 71 >d1ctfa_ d.45.1.1 (A:) Ribosomal protein L7/12, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 68 Score = 72.4 bits (178), Expect = 1e-14 Identities = 42/70 (60%), Positives = 53/70 (75%), Gaps = 2/70 (2%) Query: 57 EFEVVLKGFDDPKKKIAVIKEVRAITDLGLKEAKELVESAPKSLKTGLSKDEANEMKKKL 116 EF+V+LK K+AVIK VR T LGLKEAK+LVESAP +LK G+SKD+A +KK L Sbjct: 1 EFDVILKAAGA--NKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKAL 58 Query: 117 EDAGATVELR 126 E+AGA VE++ Sbjct: 59 EEAGAEVEVK 68 >d1dd3a2 d.45.1.1 (A:58-128) Ribosomal protein L7/12, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 71 Score = 70.8 bits (174), Expect = 4e-14 Identities = 45/73 (61%), Positives = 54/73 (73%), Gaps = 5/73 (6%) Query: 57 EFEVVLKGFDDPKKKIAVIKEVRAITDLGLKEAKELVESAPKS---LKTGLSKDEANEMK 113 EF+VVLK F KI VIK VR IT LGLKEAK+LVE A +K+G+SK+EA E+K Sbjct: 1 EFDVVLKSFGQ--NKIQVIKVVREITGLGLKEAKDLVEKAGSPDAVIKSGVSKEEAEEIK 58 Query: 114 KKLEDAGATVELR 126 KKLE+AGA VEL+ Sbjct: 59 KKLEEAGAEVELK 71 >d1dd3a1 a.108.1.1 (A:1-57) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Thermotoga maritima [TaxId: 2336]} Length = 57 Score = 41.1 bits (96), Expect = 3e-05 Identities = 23/52 (44%), Positives = 36/52 (69%) Query: 3 NIESIVEKLSSLTLIEAAELSKRLEKEWGVSASAPVSVVAPVAAEAGSAASE 54 I+ I+E + LT+ E AEL K+LE ++GV+A+APV+V A A A + A++ Sbjct: 2 TIDEIIEAIEKLTVSELAELVKKLEDKFGVTAAAPVAVAAAPVAGAAAGAAQ 53 >d2gyc31 a.108.1.1 (3:2-48) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Escherichia coli [TaxId: 562]} Length = 47 Score = 28.7 bits (64), Expect = 0.15 Identities = 14/44 (31%), Positives = 30/44 (68%) Query: 5 ESIVEKLSSLTLIEAAELSKRLEKEWGVSASAPVSVVAPVAAEA 48 + I+E ++++++++ EL +E+++GVSA+A V+V A A Sbjct: 4 DQIIEAVAAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPVEAA 47 >d1u4na_ c.69.1.2 (A:) Carboxylesterase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Length = 308 Score = 28.3 bits (61), Expect = 0.21 Identities = 6/20 (30%), Positives = 8/20 (40%) Query: 107 DEANEMKKKLEDAGATVELR 126 D + L AG VE+ Sbjct: 254 DVGKLYAEALNKAGVKVEIE 273 >d1jkma_ c.69.1.2 (A:) Carboxylesterase {Bacillus subtilis, brefeldin A esterase [TaxId: 1423]} Length = 358 Score = 28.2 bits (61), Expect = 0.21 Identities = 7/20 (35%), Positives = 9/20 (45%) Query: 107 DEANEMKKKLEDAGATVELR 126 DE ++L AG V R Sbjct: 300 DEGIAFARRLARAGVDVAAR 319 >d1jjia_ c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 311 Score = 27.8 bits (60), Expect = 0.32 Identities = 5/20 (25%), Positives = 7/20 (35%) Query: 107 DEANEMKKKLEDAGATVELR 126 DE + L AG + Sbjct: 259 DEGEVFGQMLRRAGVEASIV 278 >d1lzla_ c.69.1.2 (A:) Heroin esterase {Rhodococcus sp. [TaxId: 1831]} Length = 317 Score = 27.5 bits (59), Expect = 0.34 Identities = 9/20 (45%), Positives = 11/20 (55%) Query: 107 DEANEMKKKLEDAGATVELR 126 DE E +L AG +VEL Sbjct: 263 DEGIEYALRLLQAGVSVELH 282 >d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 238 Score = 26.8 bits (58), Expect = 0.68 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 4/63 (6%) Query: 23 SKRLEKEWGVSASAPVSVVAPVAAEAGSAASEKTEFEVVLKG--FDDPKKKIAVIKEVRA 80 +K+L +G+ A PV EA AAS+ V+K + K +K V + Sbjct: 8 AKQLFARYGLPA--PVGYACTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGVKVVNS 65 Query: 81 ITD 83 D Sbjct: 66 KED 68 >d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]} Length = 362 Score = 26.0 bits (56), Expect = 1.1 Identities = 12/55 (21%), Positives = 28/55 (50%) Query: 63 KGFDDPKKKIAVIKEVRAITDLGLKEAKELVESAPKSLKTGLSKDEANEMKKKLE 117 +G + + + V +E+RA + GLKEA+E P+ + + ++ + ++ Sbjct: 302 RGLWNEEWEEDVREEIRAELERGLKEAEEAGPVPPEWMFEDVFAEKPWHLLRQEA 356 >d1chma2 d.127.1.1 (A:157-402) Creatinase, catalytic (C-terminal) domain {Pseudomonas putida [TaxId: 303]} Length = 246 Score = 25.8 bits (55), Expect = 1.3 Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 8/51 (15%) Query: 72 IAVIKEVRAITDLGLKEAKELVESAPKSLKTGLSKDE-ANEMKKKLEDAGA 121 +I+ I D+G E + + + E A + + A A Sbjct: 8 HVMIRHGARIADIGGAAVVEAL-------GDQVPEYEVALHATQAMVRAIA 51 >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 450 Score = 25.8 bits (55), Expect = 1.4 Identities = 6/23 (26%), Positives = 12/23 (52%) Query: 46 AEAGSAASEKTEFEVVLKGFDDP 68 ++ A SE + +V+L + P Sbjct: 7 SQFAKAKSENFDKKVILSNLNKP 29 >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 405 Score = 25.3 bits (55), Expect = 1.9 Identities = 7/23 (30%), Positives = 10/23 (43%) Query: 61 VLKGFDDPKKKIAVIKEVRAITD 83 VLK + + V A+TD Sbjct: 383 VLKNVGSEQALEEARQRVAALTD 405 >d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]} Length = 365 Score = 25.2 bits (54), Expect = 2.0 Identities = 10/56 (17%), Positives = 26/56 (46%) Query: 63 KGFDDPKKKIAVIKEVRAITDLGLKEAKELVESAPKSLKTGLSKDEANEMKKKLED 118 KG +++ VI++ + +K+A E + L + + ++ +K++ E Sbjct: 303 KGLWSEEEENNVIEQAKEEIKEAIKKADETPKQKVTDLISIMFEELPFNLKEQYEI 358 >d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]} Length = 395 Score = 24.8 bits (53), Expect = 2.6 Identities = 10/62 (16%), Positives = 30/62 (48%) Query: 63 KGFDDPKKKIAVIKEVRAITDLGLKEAKELVESAPKSLKTGLSKDEANEMKKKLEDAGAT 122 +G+ D +++ A K+ R ++A+ + P L + + ++ +++K+ E Sbjct: 321 QGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARH 380 Query: 123 VE 124 ++ Sbjct: 381 LQ 382 >d1vlia2 c.1.10.6 (A:2-296) Spore coat polysaccharide biosynthesis protein SpsE, N-terminal domain {Bacillus subtilis [TaxId: 1423]} Length = 295 Score = 24.6 bits (52), Expect = 2.7 Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 3/35 (8%) Query: 84 LGLKEAKELVES---APKSLKTGLSKDEANEMKKK 115 L E KE+V+ LK G++K + ++ Sbjct: 251 LNPDELKEMVDGIRKTEAELKQGITKPVSEKLLGS 285 >d1y5ia2 c.81.1.1 (A:1-1074) Respiratory nitrate reductase 1 alpha chain {Escherichia coli [TaxId: 562]} Length = 1074 Score = 24.4 bits (52), Expect = 3.2 Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 1/55 (1%) Query: 18 EAAELSKRLE-KEWGVSASAPVSVVAPVAAEAGSAASEKTEFEVVLKGFDDPKKK 71 E L K K G + P+ A AAE + +T +V +K + + Sbjct: 923 EMDLLRKLNYTKAEGPAKGQPMLNTAIDAAEMILTLAPETNGQVAVKAWAALSEF 977 >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} Length = 416 Score = 23.8 bits (51), Expect = 4.6 Identities = 5/23 (21%), Positives = 8/23 (34%) Query: 61 VLKGFDDPKKKIAVIKEVRAITD 83 VL +D + +V I Sbjct: 388 VLDSINDEAVIERIKGKVLDICA 410 >d1d4aa_ c.23.5.3 (A:) NAD(P)H:quinone reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 273 Score = 23.9 bits (51), Expect = 5.1 Identities = 4/26 (15%), Positives = 7/26 (26%) Query: 101 KTGLSKDEANEMKKKLEDAGATVELR 126 +T + L+ G V Sbjct: 14 RTSFNYAMKEAAAAALKKKGWEVVES 39 >d1imva_ e.1.1.1 (A:) Pigment epithelium-derived factor, PEDF {Human (Homo sapiens) [TaxId: 9606]} Length = 383 Score = 23.3 bits (49), Expect = 6.4 Identities = 8/34 (23%), Positives = 16/34 (47%) Query: 66 DDPKKKIAVIKEVRAITDLGLKEAKELVESAPKS 99 +DP K+ V K A+++ G + +P + Sbjct: 8 EDPFFKVPVNKLAAAVSNFGYDLYRVRSSMSPTT 41 >d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 472 Score = 23.1 bits (49), Expect = 7.4 Identities = 8/29 (27%), Positives = 13/29 (44%) Query: 87 KEAKELVESAPKSLKTGLSKDEANEMKKK 115 K +E + S TGL+ D+ +K Sbjct: 7 KSTEECLAYFGVSETTGLTPDQVKRHLEK 35 >d1zavu1 a.108.1.1 (U:1-30) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Thermotoga maritima [TaxId: 2336]} Length = 30 Score = 23.1 bits (49), Expect = 8.5 Identities = 13/29 (44%), Positives = 20/29 (68%) Query: 3 NIESIVEKLSSLTLIEAAELSKRLEKEWG 31 I+ I+E + LT+ E AEL K+LE ++G Sbjct: 2 TIDEIIEAIEKLTVSELAELVKKLEDKFG 30 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.304 0.122 0.305 Gapped Lambda K H 0.267 0.0734 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 403,242 Number of extensions: 17358 Number of successful extensions: 74 Number of sequences better than 10.0: 1 Number of HSP's gapped: 68 Number of HSP's successfully gapped: 28 Length of query: 126 Length of database: 2,407,596 Length adjustment: 75 Effective length of query: 51 Effective length of database: 1,377,846 Effective search space: 70270146 Effective search space used: 70270146 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 43 (21.9 bits) S2: 48 (22.3 bits)