HHsearch alignment of GI: 254780145 and MMDB domain: 1vq8_G_
>1vq8_G (G:) Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui}
Probab=99.92 E-value=2.1e-26 Score=194.79 Aligned_cols=167 Identities=14% Similarity=0.083 Sum_probs=157.0
Q ss_pred CHHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECHHHHHHHHH--HCCCCCCCCCCCCCEE
Q ss_conf 74899999999999995089799998279988999999999965695899861579999973--1374212001578437
Q gi|254780145|r 2 NRQGKSVEISELSKIFSSSGSIVVAHYKGISVAQIKDLRKKMREAGGGVKVAKNRLVKIAIR--DTSIRGISDLFVGQSL 79 (172)
Q Consensus 2 ~r~~K~~~V~~l~~~l~~s~~~~v~~y~gltv~~~~~lR~~lr~~~~~~~VvKNtL~k~A~~--~~~~~~l~~~l~G~~a 79 (172)
+|++|+++|+++++.|++++.+++++|.|+++++++++|+.||. ++.++|+||||+++|++ +++++.|.++|+|+++
T Consensus 12 ~~e~K~~~v~~l~e~l~~~~~v~iv~~~gi~s~ql~~lR~~Lr~-~~~l~v~KNTL~r~ALe~~~~~~~~L~~~l~G~~a 90 (348)
T 1vq8_G 12 IPEWKQEEVDAIVEMIESYESVGVVNIAGIPSRQLQDMRRDLHG-TAELRVSRNTLLERALDDVDDGLEDLNGYITGQVG 90 (348)
T ss_dssp CCHHHHHHHHHHHHHHHC----------------------------------CHHHHHHHHTC-----------------
T ss_pred CHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHC-CCEEEEEHHHHHHHHHHHCCCCHHHHHHHHCCCEE
T ss_conf 72889999999999997699899998279878999999999655-86799961189999998719888999988377759
Q ss_pred EEEE-CCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8762-234215788788864100012232102411079899999846999899999999999989999999997768799
Q gi|254780145|r 80 IVYS-DSPVIAPKISVSFSNDNNEFRVLGGVVEKGVLNQDSIKQIASLPDLEGIRAGIISAIQSNATRLVRLLGTPQTQV 158 (172)
Q Consensus 80 ~~f~-~d~~~~aK~~~~f~k~~~~l~i~gg~~eg~~l~~~~i~~lakLPs~~el~a~lv~~l~~p~~~l~~~L~~~~~~l 158 (172)
++|+ +||..+.|++.+|.+.++.....+|.+|+.+.+.+.+..+++|||+.++++++++++++|+..+...+.....+.
T Consensus 91 liFT~~dp~~v~k~l~~~~~~~~ak~g~iA~~Dv~i~~g~t~~~p~~l~s~~q~lgi~t~i~~G~I~i~~~~~v~~~g~~ 170 (348)
T 1vq8_G 91 LIGTDDNPFSLFQELEASKTPAPIGAGEVAPNDIVIPEGDTGVDPGPFVGELQSVGADARIQEGSIQVLSDSTVLDTGEE 170 (348)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHCCCCEEECCCEEEEECCEEEECCCCC
T ss_conf 99966887899999886336322234466785189847766889985378998759973751886998303599737999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999976
Q gi|254780145|r 159 VRAISAFVDKN 169 (172)
Q Consensus 159 ~~~L~~~~~k~ 169 (172)
++..++...++
T Consensus 171 v~~~~A~lLk~ 181 (348)
T 1vq8_G 171 VSQELSNVLNE 181 (348)
T ss_dssp -----------
T ss_pred CCHHHHHHHHH
T ss_conf 68999999996