HHsearch alignment of GI: 254780145 and MMDB domain: 1vq8_G_

>1vq8_G (G:) Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui}
Probab=99.92  E-value=2.1e-26  Score=194.79  Aligned_cols=167  Identities=14%  Similarity=0.083  Sum_probs=157.0

Q ss_pred             CHHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECHHHHHHHHH--HCCCCCCCCCCCCCEE
Q ss_conf             74899999999999995089799998279988999999999965695899861579999973--1374212001578437
Q gi|254780145|r    2 NRQGKSVEISELSKIFSSSGSIVVAHYKGISVAQIKDLRKKMREAGGGVKVAKNRLVKIAIR--DTSIRGISDLFVGQSL   79 (172)
Q Consensus         2 ~r~~K~~~V~~l~~~l~~s~~~~v~~y~gltv~~~~~lR~~lr~~~~~~~VvKNtL~k~A~~--~~~~~~l~~~l~G~~a   79 (172)
                      +|++|+++|+++++.|++++.+++++|.|+++++++++|+.||. ++.++|+||||+++|++  +++++.|.++|+|+++
T Consensus        12 ~~e~K~~~v~~l~e~l~~~~~v~iv~~~gi~s~ql~~lR~~Lr~-~~~l~v~KNTL~r~ALe~~~~~~~~L~~~l~G~~a   90 (348)
T 1vq8_G           12 IPEWKQEEVDAIVEMIESYESVGVVNIAGIPSRQLQDMRRDLHG-TAELRVSRNTLLERALDDVDDGLEDLNGYITGQVG   90 (348)
T ss_dssp             CCHHHHHHHHHHHHHHHC----------------------------------CHHHHHHHHTC-----------------
T ss_pred             CHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHC-CCEEEEEHHHHHHHHHHHCCCCHHHHHHHHCCCEE
T ss_conf             72889999999999997699899998279878999999999655-86799961189999998719888999988377759


Q ss_pred             EEEE-CCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8762-234215788788864100012232102411079899999846999899999999999989999999997768799
Q gi|254780145|r   80 IVYS-DSPVIAPKISVSFSNDNNEFRVLGGVVEKGVLNQDSIKQIASLPDLEGIRAGIISAIQSNATRLVRLLGTPQTQV  158 (172)
Q Consensus        80 ~~f~-~d~~~~aK~~~~f~k~~~~l~i~gg~~eg~~l~~~~i~~lakLPs~~el~a~lv~~l~~p~~~l~~~L~~~~~~l  158 (172)
                      ++|+ +||..+.|++.+|.+.++.....+|.+|+.+.+.+.+..+++|||+.++++++++++++|+..+...+.....+.
T Consensus        91 liFT~~dp~~v~k~l~~~~~~~~ak~g~iA~~Dv~i~~g~t~~~p~~l~s~~q~lgi~t~i~~G~I~i~~~~~v~~~g~~  170 (348)
T 1vq8_G           91 LIGTDDNPFSLFQELEASKTPAPIGAGEVAPNDIVIPEGDTGVDPGPFVGELQSVGADARIQEGSIQVLSDSTVLDTGEE  170 (348)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHCCCCEEECCCEEEEECCEEEECCCCC
T ss_conf             99966887899999886336322234466785189847766889985378998759973751886998303599737999


Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999999976
Q gi|254780145|r  159 VRAISAFVDKN  169 (172)
Q Consensus       159 ~~~L~~~~~k~  169 (172)
                      ++..++...++
T Consensus       171 v~~~~A~lLk~  181 (348)
T 1vq8_G          171 VSQELSNVLNE  181 (348)
T ss_dssp             -----------
T ss_pred             CCHHHHHHHHH
T ss_conf             68999999996