Query         gi|254780145|ref|YP_003064558.1| 50S ribosomal protein L10 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 172
No_of_seqs    125 out of 1666
Neff          6.9 
Searched_HMMs 23785
Date          Sun May 22 16:12:14 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780145.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2j01_J 50S ribosomal protein L 100.0 1.1E-44       0  314.5  19.7  169    1-170     1-172 (173)
  2 1zav_A 50S ribosomal protein L 100.0 3.5E-44       0  311.4  20.0  171    1-171     3-180 (180)
  3 3jyw_8 60S ribosomal protein L  99.7 5.4E-19 2.3E-23  144.8   3.1  105    2-110     2-112 (118)
  4 3jsy_A Acidic ribosomal protei  99.7 1.1E-16 4.7E-21  129.4  11.3   94    3-97      2-103 (213)
  5 3a1y_G Acidic ribosomal protei  99.7 6.1E-17 2.6E-21  131.2   5.7   95    2-96      4-106 (284)
  6 1vq8_G Acidic ribosomal protei  99.6 1.9E-16 8.2E-21  127.9   3.8   93    4-97     14-109 (348)
  7 2zkr_g 60S acidic ribosomal pr  99.4   1E-14 4.4E-19  116.4   0.0   95    1-96      1-105 (317)
  8 2xr1_A Cleavage and polyadenyl  43.1      12  0.0005   16.8   2.4   35    8-42    399-433 (640)
  9 1luz_A Protein K3, protein K2;  42.8      14 0.00058   16.4   2.6   35   22-56     37-71  (88)
 10 3brc_A Conserved protein of un  29.9      24   0.001   14.9   2.2   51    4-54     20-70  (156)
 11 1i1q_B Anthranilate synthase c  20.7      38  0.0016   13.5   3.9   55   23-87      3-58  (192)

No 1  
>2j01_J 50S ribosomal protein L10; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_J 3d5b_J 3d5d_J 3i8i_Y 3kir_J 3kit_J 3kiw_J 3kiy_J 3mrz_I 3ms1_I
Probab=100.00  E-value=1.1e-44  Score=314.52  Aligned_cols=169  Identities=24%  Similarity=0.491  Sum_probs=163.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHCC-EEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHCCCCCCCCCCCCCEE
Q ss_conf             974899999999999995089-7999982799889999999999656958998615799999731374212001578437
Q gi|254780145|r    1 MNRQGKSVEISELSKIFSSSG-SIVVAHYKGISVAQIKDLRKKMREAGGGVKVAKNRLVKIAIRDTSIRGISDLFVGQSL   79 (172)
Q Consensus         1 m~r~~K~~~V~~l~~~l~~s~-~~~v~~y~gltv~~~~~lR~~lr~~~~~~~VvKNtL~k~A~~~~~~~~l~~~l~G~~a   79 (172)
                      |+|++|+++|+++++.|++++ ++++++|+||||+|+++||++||++|++|+|+||||+|+|+++++++.+ +.|.||++
T Consensus         1 M~~~~K~~~v~~l~~~l~~a~~~~~~~~y~Gl~v~~~~~LR~~lr~~g~~~~VvKNtL~k~A~~~t~~~~l-~~~~G~~a   79 (173)
T 2j01_J            1 MPNKRNVELLATLKENLERAQGSFFLVNYQGLPAKETHALRQALKQNGARLFVAKNTLIRLALKELGLPEL-DGLQGPSA   79 (173)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHCCCCCHH-HHCCCCEE
T ss_conf             99278999999999999838773999977999789999999999867987999704999999873796311-33048668


Q ss_pred             EEEECCCCHHHHHHHHHHHHCCH--HHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             87622342157887888641000--1223210241107989999984699989999999999998999999999776879
Q gi|254780145|r   80 IVYSDSPVIAPKISVSFSNDNNE--FRVLGGVVEKGVLNQDSIKQIASLPDLEGIRAGIISAIQSNATRLVRLLGTPQTQ  157 (172)
Q Consensus        80 ~~f~~d~~~~aK~~~~f~k~~~~--l~i~gg~~eg~~l~~~~i~~lakLPs~~el~a~lv~~l~~p~~~l~~~L~~~~~~  157 (172)
                      ++|++||+.++|++.+|.|++++  +.++||++||++++.+++++||+|||+|+++++++|+|++|+++++++|++++++
T Consensus        80 ~~f~~d~~~~ak~~~~f~k~~~k~~~~i~gg~~eg~~l~~~~i~~la~LPs~eel~a~lv~~l~~P~~~l~~~L~a~~~~  159 (173)
T 2j01_J           80 VVFYEDPVAAAKTLVQFAKSNPKGIPQVKSGLLQGQILTAKDVEALAELPTMDELRAELVGVLQAPMAELVGVLGGVARE  159 (173)
T ss_pred             EEEECCCCCHHHHHHHHHHHCCCCCCEEEEEEECCEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99853664067888999984635363257998878870688999983599999999999999987999999999858999


Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             9999999999762
Q gi|254780145|r  158 VVRAISAFVDKNQ  170 (172)
Q Consensus       158 l~~~L~~~~~k~e  170 (172)
                      |+++|+++++|++
T Consensus       160 l~~~L~a~~~kk~  172 (173)
T 2j01_J          160 LVGILEAYAEKKA  172 (173)
T ss_pred             HHHHHHHHHHHCC
T ss_conf             9999999997404


No 2  
>1zav_A 50S ribosomal protein L10; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: d.58.62.1 PDB: 1zaw_A 1zax_A
Probab=100.00  E-value=3.5e-44  Score=311.36  Aligned_cols=171  Identities=29%  Similarity=0.516  Sum_probs=165.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHC---CCEEEEECHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             9748999999999999950897999982799889999999999656---9589986157999997313742120015784
Q gi|254780145|r    1 MNRQGKSVEISELSKIFSSSGSIVVAHYKGISVAQIKDLRKKMREA---GGGVKVAKNRLVKIAIRDTSIRGISDLFVGQ   77 (172)
Q Consensus         1 m~r~~K~~~V~~l~~~l~~s~~~~v~~y~gltv~~~~~lR~~lr~~---~~~~~VvKNtL~k~A~~~~~~~~l~~~l~G~   77 (172)
                      |+|++|+++|+++++.|+++++++++||+||+|+++++||+++|++   |++|+|+||||+++|+++++|+++.++|+||
T Consensus         3 m~r~~K~~~v~~l~~~l~~s~~v~~~~y~gltv~~~~~LR~~lre~~~~g~~~kVvKNtL~k~Al~~t~~~~l~~~l~g~   82 (180)
T 1zav_A            3 LTRQQKELIVKEMSEIFKKTSLILFADFLGFTVADLTELRSRLREKYGDGARFRVVKNTLLNLALKNAEYEGYEEFLKGP   82 (180)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCSEEEEECCTTCCHHHHHHHHHHHHHHHTTSEEEEEECHHHHHHHHHHTTCCSCGGGCSSS
T ss_pred             CCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHCCCCHHHHHHCCCC
T ss_conf             87899999999999999759979999638997999999999998623698289996209999998667815678761587


Q ss_pred             EEEEEE--CCCCHHHHHHHHHHHHCCH--HHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             378762--2342157887888641000--122321024110798999998469998999999999999899999999977
Q gi|254780145|r   78 SLIVYS--DSPVIAPKISVSFSNDNNE--FRVLGGVVEKGVLNQDSIKQIASLPDLEGIRAGIISAIQSNATRLVRLLGT  153 (172)
Q Consensus        78 ~a~~f~--~d~~~~aK~~~~f~k~~~~--l~i~gg~~eg~~l~~~~i~~lakLPs~~el~a~lv~~l~~p~~~l~~~L~~  153 (172)
                      ++++|+  +||+.++|++.+|.|+++.  +.++||++||+++|.+++++||+|||++|++||++|+|++|+++++++|++
T Consensus        83 ~a~~~~~~~d~~~~aK~~~~f~k~~~~~~~~i~gg~~eg~~l~~~~v~~la~LPs~eel~a~lv~~l~ap~~~l~~~L~a  162 (180)
T 1zav_A           83 TAVLYVTEGDPVEAVKIIYNFYKDKKADLSRLKGGFLEGKKFTAEEVENIAKLPSKEELYAMLVGRVKAPITGLVFALSG  162 (180)
T ss_dssp             EEEEEESSSCTHHHHHHHHHHHHHTTCCGGGEEEEEETTEEEEHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             52787624771788887799998704545146788854875699999999459999999999999998799999999971


Q ss_pred             HHHHHHHHHHHHHHHHHC
Q ss_conf             687999999999997626
Q gi|254780145|r  154 PQTQVVRAISAFVDKNQQ  171 (172)
Q Consensus       154 ~~~~l~~~L~~~~~k~ee  171 (172)
                      ++++|+++|+++++|++|
T Consensus       163 ~~~~l~~~L~~~~~kk~e  180 (180)
T 1zav_A          163 ILRNLVYVLNAIKEKKSE  180 (180)
T ss_dssp             HHHHHHHHHHHHHHTC--
T ss_pred             HHHHHHHHHHHHHHHHCC
T ss_conf             799999999999987259


No 3  
>3jyw_8 60S ribosomal protein LP0; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=99.74  E-value=5.4e-19  Score=144.75  Aligned_cols=105  Identities=22%  Similarity=0.276  Sum_probs=93.8

Q ss_pred             CHHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHC-----CCCCCCCCCCC
Q ss_conf             7489999999999999508979999827998899999999996569589986157999997313-----74212001578
Q gi|254780145|r    2 NRQGKSVEISELSKIFSSSGSIVVAHYKGISVAQIKDLRKKMREAGGGVKVAKNRLVKIAIRDT-----SIRGISDLFVG   76 (172)
Q Consensus         2 ~r~~K~~~V~~l~~~l~~s~~~~v~~y~gltv~~~~~lR~~lr~~~~~~~VvKNtL~k~A~~~~-----~~~~l~~~l~G   76 (172)
                      ||++|+++|+++++.|++++++++++|+|++++++++||++||+. +.++|+||||+++|++++     +++.+.+++.|
T Consensus         2 tre~K~~~v~el~e~l~~~~~v~vv~~~gl~~~~~~~lR~~lr~~-~~~~v~Kntl~k~Al~~~~~~~~~~~~l~~~l~G   80 (118)
T 3jyw_8            2 IREKKAEYFAKLREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGR-AVVLMGKNTMVRRAIRGFLSDLPDFEKLLPFVKG   80 (118)
T ss_dssp             CHHHHHHHHHHHHHHHHHCCCCCCCBCCSCCTHHHHHHHTTSCSS-CCCSCCCHHHHHHHHHSCCSSSCCSTTCTTTCSS
T ss_pred             CCHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCC-CEEEEEHHHHHHHHHHHCCCCCCCHHHHHHHCCC
T ss_conf             508899999999999986998999980798789999999997638-8699853899999998500025667888866678


Q ss_pred             CEEEEEE-CCCCHHHHHHHHHHHHCCHHHHHHHHC
Q ss_conf             4378762-234215788788864100012232102
Q gi|254780145|r   77 QSLIVYS-DSPVIAPKISVSFSNDNNEFRVLGGVV  110 (172)
Q Consensus        77 ~~a~~f~-~d~~~~aK~~~~f~k~~~~l~i~gg~~  110 (172)
                      |++++|+ +||..++|++.+|.+..+   .++|.+
T Consensus        81 ~~~l~ft~~d~~~~~k~l~~~~~~~~---aK~G~i  112 (118)
T 3jyw_8           81 YVGFVFTNEPLTEIKNVIVSNRVAAP---ARAGAV  112 (118)
T ss_dssp             SBCCCCSSSCHHHHHHHHHHHTTTTT---CCCCCB
T ss_pred             CEEEEEECCCHHHHHHHHHHHCCCCC---CCCCCC
T ss_conf             87999979998999999998488666---778871


No 4  
>3jsy_A Acidic ribosomal protein P0 homolog; ribonucleoprotein; 1.60A {Methanocaldococcus jannaschii}
Probab=99.70  E-value=1.1e-16  Score=129.44  Aligned_cols=94  Identities=16%  Similarity=0.306  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHC-------CCCCCCCCCC
Q ss_conf             489999999999999508979999827998899999999996569589986157999997313-------7421200157
Q gi|254780145|r    3 RQGKSVEISELSKIFSSSGSIVVAHYKGISVAQIKDLRKKMREAGGGVKVAKNRLVKIAIRDT-------SIRGISDLFV   75 (172)
Q Consensus         3 r~~K~~~V~~l~~~l~~s~~~~v~~y~gltv~~~~~lR~~lr~~~~~~~VvKNtL~k~A~~~~-------~~~~l~~~l~   75 (172)
                      +++|++.|+++++.+++++.+++++|+|+++++++++|++||. ++.++|+||||+++|++++       +++.+.++++
T Consensus         2 ~~wK~~~v~~l~e~l~~~~~v~v~~~~gl~~~~l~~lR~~lr~-~~~~~v~KNtL~~~Al~~~~~~~~~~~l~~L~~~L~   80 (213)
T 3jsy_A            2 APWKIEEVKTLKGLIKSKPVVAIVDMMDVPAPQLQEIRDKIRD-KVKLRMSRNTLIIRALKEAAEELNNPKLAELANYVE   80 (213)
T ss_dssp             CHHHHHHHHHHHHHHHHSSEEEEEECCSCCHHHHHHHHHHHTT-TEEEEECCHHHHHHHHHHHHHHTTCGGGGGGGGGCC
T ss_pred             CCHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHC
T ss_conf             7169999999999997699899998069977999999999668-969999646999999985034321202788888836


Q ss_pred             CCEEEEEEC-CCCHHHHHHHHHH
Q ss_conf             843787622-3421578878886
Q gi|254780145|r   76 GQSLIVYSD-SPVIAPKISVSFS   97 (172)
Q Consensus        76 G~~a~~f~~-d~~~~aK~~~~f~   97 (172)
                      |+++++|++ ||...++.+.+|.
T Consensus        81 G~~~liFTn~dp~ev~k~l~~~~  103 (213)
T 3jsy_A           81 RGAAILVTDMNPFKLYKLLEENK  103 (213)
T ss_dssp             SSEEEEEESSCHHHHHHHHHHSC
T ss_pred             CCEEEEEECCCHHHHHHHHHHHC
T ss_conf             77389995699899999999707


No 5  
>3a1y_G Acidic ribosomal protein P0; stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=99.66  E-value=6.1e-17  Score=131.18  Aligned_cols=95  Identities=21%  Similarity=0.349  Sum_probs=85.0

Q ss_pred             CHHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHC-------CCCCCCCCC
Q ss_conf             7489999999999999508979999827998899999999996569589986157999997313-------742120015
Q gi|254780145|r    2 NRQGKSVEISELSKIFSSSGSIVVAHYKGISVAQIKDLRKKMREAGGGVKVAKNRLVKIAIRDT-------SIRGISDLF   74 (172)
Q Consensus         2 ~r~~K~~~V~~l~~~l~~s~~~~v~~y~gltv~~~~~lR~~lr~~~~~~~VvKNtL~k~A~~~~-------~~~~l~~~l   74 (172)
                      ..++|+++|+++++.+++++.+++++|+|+++++++++|++||+.++.++|+||||+++|++++       +++.|.+++
T Consensus         4 v~e~K~~~v~~L~e~l~~~~~v~vv~~~gl~s~ql~~lR~~Lr~~~~~l~v~KNtL~k~Al~~~~~~~~~~~le~L~~~L   83 (284)
T 3a1y_G            4 VAEWKKKEVEELAKLIKSYPVIALVDVSSMPAYPLSQMRRLIRENGGLLRVSRNTLIELAIKKAAKELGKPELEKLVEYI   83 (284)
T ss_dssp             SCCCTTTHHHHHHHHHTTCSEEEEEECTTCCHHHHHHHHHHHHHTTEEEEECSSSSCCHHHHHHHTTCSCSSTTSSSCCC
T ss_pred             CHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf             38999999999999997699899998179877999999999983596899972289999997322110211077899872


Q ss_pred             CCCEEEEEEC-CCCHHHHHHHHH
Q ss_conf             7843787622-342157887888
Q gi|254780145|r   75 VGQSLIVYSD-SPVIAPKISVSF   96 (172)
Q Consensus        75 ~G~~a~~f~~-d~~~~aK~~~~f   96 (172)
                      +|+++++|++ ||....|.+.+|
T Consensus        84 ~G~~gliFTn~dp~ev~k~l~~~  106 (284)
T 3a1y_G           84 DRGAGILVTNMNPFKLYKFLQQN  106 (284)
T ss_dssp             CTTEEEEEESSCHHHHHHHHHHC
T ss_pred             CCCEEEEEECCCHHHHHHHHHHH
T ss_conf             78717999468989999999970


No 6  
>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB: 1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I* 1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I* 1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...
Probab=99.61  E-value=1.9e-16  Score=127.86  Aligned_cols=93  Identities=20%  Similarity=0.346  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHC--CCCCCCCCCCCCEEEE
Q ss_conf             89999999999999508979999827998899999999996569589986157999997313--7421200157843787
Q gi|254780145|r    4 QGKSVEISELSKIFSSSGSIVVAHYKGISVAQIKDLRKKMREAGGGVKVAKNRLVKIAIRDT--SIRGISDLFVGQSLIV   81 (172)
Q Consensus         4 ~~K~~~V~~l~~~l~~s~~~~v~~y~gltv~~~~~lR~~lr~~~~~~~VvKNtL~k~A~~~~--~~~~l~~~l~G~~a~~   81 (172)
                      ++|+++|+++++.|++++.+++++|.|+++++++++|+.||. ++.++|+||||+|+|+++.  +++.|.++++|+++++
T Consensus        14 EwK~~~V~eL~e~l~~y~~v~vv~~~gv~s~ql~~iRk~LR~-~a~i~v~KNTLmr~AL~e~~~~le~L~~~L~G~~alv   92 (348)
T 1vq8_G           14 EWKQEEVDAIVEMIESYESVGVVNIAGIPSRQLQDMRRDLHG-TAELRVSRNTLLERALDDVDDGLEDLNGYITGQVGLI   92 (348)
T ss_dssp             HHHHHHHHHHHHHHHC----------------------------------CHHHHHHHHTC-------------------
T ss_pred             HHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHC-CCEEEEEEHHHHHHHHHHCCCCHHHHHHHHCCCEEEE
T ss_conf             889999999999997699899998279988999999999767-9689998549999999870988899999837974899


Q ss_pred             EEC-CCCHHHHHHHHHH
Q ss_conf             622-3421578878886
Q gi|254780145|r   82 YSD-SPVIAPKISVSFS   97 (172)
Q Consensus        82 f~~-d~~~~aK~~~~f~   97 (172)
                      |++ ||....+.+.+|.
T Consensus        93 FTn~dp~ev~k~l~~~k  109 (348)
T 1vq8_G           93 GTDDNPFSLFQELEASK  109 (348)
T ss_dssp             -----------------
T ss_pred             EECCCHHHHHHHHHHHC
T ss_conf             96688789999998725


No 7  
>2zkr_g 60S acidic ribosomal protein P0; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.42  E-value=1e-14  Score=116.40  Aligned_cols=95  Identities=16%  Similarity=0.226  Sum_probs=81.7

Q ss_pred             CCHH----HHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHC-----CCCCCC
Q ss_conf             9748----9999999999999508979999827998899999999996569589986157999997313-----742120
Q gi|254780145|r    1 MNRQ----GKSVEISELSKIFSSSGSIVVAHYKGISVAQIKDLRKKMREAGGGVKVAKNRLVKIAIRDT-----SIRGIS   71 (172)
Q Consensus         1 m~r~----~K~~~V~~l~~~l~~s~~~~v~~y~gltv~~~~~lR~~lr~~~~~~~VvKNtL~k~A~~~~-----~~~~l~   71 (172)
                      |+|+    +|.++|+++++.+++++.+++++|.|+++++++++|+.||. ++.++|.||||+|+|++++     +++.|.
T Consensus         1 m~r~~~a~wK~~~v~kL~ell~~y~~v~Iv~~~nv~s~qlq~IR~~LRg-~a~i~mgKNtLmr~AL~~~~e~~~~le~L~   79 (317)
T 2zkr_g            1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRG-KAVVLMGKNTMMRKAIRGHLENNPALEKLL   79 (317)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHCCCCCHHHHHHH
T ss_conf             9970477999999999999997699899998279877999999999756-846999655699999985334541278889


Q ss_pred             CCCCCCEEEEEEC-CCCHHHHHHHHH
Q ss_conf             0157843787622-342157887888
Q gi|254780145|r   72 DLFVGQSLIVYSD-SPVIAPKISVSF   96 (172)
Q Consensus        72 ~~l~G~~a~~f~~-d~~~~aK~~~~f   96 (172)
                      ++++|+++++|++ ||....+.+.++
T Consensus        80 ~~L~G~~gliFTn~dp~ev~~~l~~~  105 (317)
T 2zkr_g           80 PHIRGNVGFVFTKEDLTEIRDMLLAN  105 (317)
T ss_dssp             --------------------------
T ss_pred             HHHCCCEEEEEECCCHHHHHHHHHHH
T ss_conf             87258726888636718999999972


No 8  
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}
Probab=43.13  E-value=12  Score=16.83  Aligned_cols=35  Identities=6%  Similarity=0.008  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHH
Q ss_conf             99999999995089799998279988999999999
Q gi|254780145|r    8 VEISELSKIFSSSGSIVVAHYKGISVAQIKDLRKK   42 (172)
Q Consensus         8 ~~V~~l~~~l~~s~~~~v~~y~gltv~~~~~lR~~   42 (172)
                      .+.+.+.+.+++...+++.-|.--.+.++..+-..
T Consensus       399 ~l~~~I~~tl~~gg~VlIp~~a~gR~qEI~~~l~~  433 (640)
T 2xr1_A          399 HLQMVVKNTIERGGIAVIPAFAVGRSQEVMIVLEE  433 (640)
T ss_dssp             HHHHHC--------CEEEECCTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHH
T ss_conf             99999999998299789986320369999999999


No 9  
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus WR} SCOP: b.40.4.5
Probab=42.81  E-value=14  Score=16.43  Aligned_cols=35  Identities=17%  Similarity=0.190  Sum_probs=29.8

Q ss_pred             EEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECHH
Q ss_conf             79999827998899999999996569589986157
Q gi|254780145|r   22 SIVVAHYKGISVAQIKDLRKKMREAGGGVKVAKNR   56 (172)
Q Consensus        22 ~~~v~~y~gltv~~~~~lR~~lr~~~~~~~VvKNt   56 (172)
                      -.++++|-.+..+.+..+|++|-..-++.+|++-.
T Consensus        37 eail~dy~~~~~d~~~klk~kLVGKtIkVqVIR~D   71 (88)
T 1luz_A           37 EAILAESVKMHMDRYVEYRDKLVGKTVKVKVIRVD   71 (88)
T ss_dssp             EEEEGGGSSCCHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             EEEEEEHHHHHHHHHHHHHHHHCCCEEEEEEEEEC
T ss_conf             38877343551589999999753956999999983


No 10 
>3brc_A Conserved protein of unknown function; methanobacterium thermoautotrophicum, structural genomics, MCSG, PSI-2; 1.60A {Methanothermobacterthermautotrophicus str}
Probab=29.88  E-value=24  Score=14.86  Aligned_cols=51  Identities=18%  Similarity=0.215  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf             899999999999995089799998279988999999999965695899861
Q gi|254780145|r    4 QGKSVEISELSKIFSSSGSIVVAHYKGISVAQIKDLRKKMREAGGGVKVAK   54 (172)
Q Consensus         4 ~~K~~~V~~l~~~l~~s~~~~v~~y~gltv~~~~~lR~~lr~~~~~~~VvK   54 (172)
                      -.|.+.|+.+++.+.+++-++|...++-.+.-.++.-.++-...+++--+.
T Consensus        20 GD~~EEve~Iq~~I~~Ak~ivV~t~N~kK~~vi~~il~~~~~~~~~~l~i~   70 (156)
T 3brc_A           20 GDRSEEVEAIRKYIRSARRTVVPNWNAEKVDAINDVLRSFNLREAEHLQFN   70 (156)
T ss_dssp             SCCHHHHHHHHHHHHHCSCEEECCCCHHHHHHHHHHHHHTTCCCCEECCSC
T ss_pred             CCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEECC
T ss_conf             655999999999985266499856970677999999998168630046546


No 11 
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=20.73  E-value=38  Score=13.54  Aligned_cols=55  Identities=16%  Similarity=0.330  Sum_probs=30.2

Q ss_pred             EEEEE-ECCCCHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf             99998-279988999999999965695899861579999973137421200157843787622342
Q gi|254780145|r   23 IVVAH-YKGISVAQIKDLRKKMREAGGGVKVAKNRLVKIAIRDTSIRGISDLFVGQSLIVYSDSPV   87 (172)
Q Consensus        23 ~~v~~-y~gltv~~~~~lR~~lr~~~~~~~VvKNtL~k~A~~~~~~~~l~~~l~G~~a~~f~~d~~   87 (172)
                      ++++| |.-.|    ..+-+.|++.|+.+.|++|..-....    .+.+  ....+.+++.|..|.
T Consensus         3 iliiD~~dSFt----~Niv~~l~~~g~~v~V~~~~~~~~~~----~~~~--~~~~~dgiILsgGPg   58 (192)
T 1i1q_B            3 ILLLDNIDSFT----WNLADQLRTNGHNVVIYRNHIPAQTL----IDRL--ATMKNPVLMLSPGPG   58 (192)
T ss_dssp             EEEEECSCSSH----HHHHHHHHHTTCEEEEEETTSCSHHH----HHHH--TTCSSEEEEECCCSS
T ss_pred             EEEEECCCCHH----HHHHHHHHHCCCCEEEEECCCCCCCC----HHHH--HHCCCCEEEEECCCC
T ss_conf             99997888279----99999999789907999899877367----9999--834969699819998


Done!