RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780145|ref|YP_003064558.1| 50S ribosomal protein L10 [Candidatus Liberibacter asiaticus str. psy62] (172 letters) >3i8i_Y Elongation Complex Of The 70s Ribosome With Three Trnas And Mrna. This Entry 3i8i Contains 50s Ribosomal Subnit. {Thermus thermophilus} (Y:) Length = 173 Score = 122 bits (307), Expect = 3e-29 Identities = 43/173 (24%), Positives = 90/173 (52%), Gaps = 4/173 (2%) Query: 1 MNRQGKSVEISELSKIFS-SSGSIVVAHYKGISVAQIKDLRKKMREAGGGVKVAKNRLVK 59 M + ++ L + + GS + +Y+G+ + LR+ +++ G + VAKN L++ Sbjct: 1 MPNKRNVELLATLKENLERAQGSFFLVNYQGLPAKETHALRQALKQNGARLFVAKNTLIR 60 Query: 60 IAIRDTSIRGISDLFVGQSLIVYSDSPVIAPKISVSF--SNDNNEFRVLGGVVEKGVLNQ 117 +A+++ + + L G S +V+ + PV A K V F SN +V G+++ +L Sbjct: 61 LALKELGLPELDGLQ-GPSAVVFYEDPVAAAKTLVQFAKSNPKGIPQVKSGLLQGQILTA 119 Query: 118 DSIKQIASLPDLEGIRAGIISAIQSNATRLVRLLGTPQTQVVRAISAFVDKNQ 170 ++ +A LP ++ +RA ++ +Q+ LV +LG ++V + A+ +K Sbjct: 120 KDVEALAELPTMDELRAELVGVLQAPMAELVGVLGGVARELVGILEAYAEKKA 172 >1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} (G:) Length = 348 Score = 103 bits (258), Expect = 1e-23 Identities = 23/169 (13%), Positives = 58/169 (34%), Gaps = 4/169 (2%) Query: 3 RQGKSVEISELSKIFSSSGSIVVAHYKGISVAQIKDLRKKMREAGGGVKVAKNRLVKIAI 62 + K E+ + ++ S S+ V + GI Q++D+R+ + ++V++N L++ A+ Sbjct: 13 PEWKQEEVDAIVEMIESYESVGVVNIAGIPSRQLQDMRRDLHG-TAELRVSRNTLLERAL 71 Query: 63 R--DTSIRGISDLFVGQSLIVYS-DSPVIAPKISVSFSNDNNEFRVLGGVVEKGVLNQDS 119 D + ++ GQ ++ + D+P + + + + D+ Sbjct: 72 DDVDDGLEDLNGYITGQVGLIGTDDNPFSLFQELEASKTPAPIGAGEVAPNDIVIPEGDT 131 Query: 120 IKQIASLPDLEGIRAGIISAIQSNATRLVRLLGTPQTQVVRAISAFVDK 168 + + L + V + V Sbjct: 132 GVDPGPFVGELQSVGADARIQEGSIQVLSDSTVLDTGEEVSQELSNVLN 180 >1zav_A 50S ribosomal protein L10; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} (A:1-136) Length = 136 Score = 101 bits (254), Expect = 4e-23 Identities = 40/134 (29%), Positives = 69/134 (51%), Gaps = 7/134 (5%) Query: 1 MNRQGKSVEISELSKIFSSSGSIVVAHYKGISVAQIKDLRKKMRE---AGGGVKVAKNRL 57 + RQ K + + E+S+IF + I+ A + G +VA + +LR ++RE G +V KN L Sbjct: 3 LTRQQKELIVKEMSEIFKKTSLILFADFLGFTVADLTELRSRLREKYGDGARFRVVKNTL 62 Query: 58 VKIAIRDTSIRGISDLFVGQSLIVYS--DSPVIAPKISVSFSNDNNE--FRVLGGVVEKG 113 + +A+++ G + G + ++Y PV A KI +F D R+ GG +E Sbjct: 63 LNLALKNAEYEGYEEFLKGPTAVLYVTEGDPVEAVKIIYNFYKDKKADLSRLKGGFLEGK 122 Query: 114 VLNQDSIKQIASLP 127 + ++ IA LP Sbjct: 123 KFTAEEVENIAKLP 136 >3a1y_G Acidic ribosomal protein P0; stalk, ribosomal protein,helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii} (G:1-206) Length = 206 Score = 99.8 bits (248), Expect = 2e-22 Identities = 23/180 (12%), Positives = 57/180 (31%), Gaps = 13/180 (7%) Query: 2 NRQGKSVEISELSKIFSSSGSIVVAHYKGISVAQIKDLRKKMREAGGGVKVAKNRLVKIA 61 + K E+ EL+K+ S I + + + +R+ +RE GG ++V++N L+++A Sbjct: 4 VAEWKKKEVEELAKLIKSYPVIALVDVSSMPAYPLSQMRRLIRENGGLLRVSRNTLIELA 63 Query: 62 IRDTSI-------RGISDLFVGQSLIVYS-DSPVIAPKISVSFSNDNNEFRVLGGVVEKG 113 I+ + + + + I+ + +P K + Sbjct: 64 IKKAAKELGKPELEKLVEYIDRGAGILVTNMNPFKLYKFLQQNRQPAPAKPGAVVPKDVV 123 Query: 114 VLNQDSIKQIASLPDLEGIRAGIISAIQSNATRLVR-----LLGTPQTQVVRAISAFVDK 168 V + + + T ++ ++A + Sbjct: 124 VPAGPTPLAPGPIVGQMQALGIPARIEKGKVTIQKDTTVLKAGEVITPELANILNALGIQ 183 >2zkr_g 60S acidic ribosomal protein P0; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} (g:) Length = 317 Score = 89.0 bits (220), Expect = 3e-19 Identities = 18/170 (10%), Positives = 47/170 (27%), Gaps = 16/170 (9%) Query: 2 NRQGKSVEISELSKIFSSSGSIVVAHYKGISVAQIKDLRKKMREAGGGVKVAKNRLVKIA 61 KS ++ ++ + + Q++ +R +R V + KN +++ A Sbjct: 6 RATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRG-KAVVLMGKNTMMRKA 64 Query: 62 IRDTS-----IRGISDLFVGQSLIVY-SDSPVIAPKISVSFSNDNNEFRVLGGVVEKGVL 115 IR + + G V+ + + ++ G + Sbjct: 65 IRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAA--------ARAGAI 116 Query: 116 NQDSIKQIASLPDLEGIRAGIISAIQSNATRLVRLLGTPQ-TQVVRAISA 164 + A L + A+ + Q+++ Sbjct: 117 APCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDK 166 >3jyw_8 60S ribosomal protein LP0; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} (8:) Length = 118 Score = 77.6 bits (191), Expect = 9e-16 Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 9/118 (7%) Query: 3 RQGKSVEISELSKIFSSSGSIVVAHYKGISVAQIKDLRKKMREAGGGVKVAKNRLVKIAI 62 R+ K+ ++L + S+ V +S Q+ ++RK++R V + KN +V+ AI Sbjct: 3 REKKAEYFAKLREYLEEYKSLFVVGVDNVSSQQMHEVRKELRG-RAVVLMGKNTMVRRAI 61 Query: 63 RDTSIRG-----ISDLFVGQSLIVYS-DSPVIAPKISVSFSNDNNEFRVLGGVVEKGV 114 R + G V++ + + VS R G V + + Sbjct: 62 RGFLSDLPDFEKLLPFVKGYVGFVFTNEPLTEIKNVIVSNRVA-APARA-GAVAPEDI 117 >1zav_A 50S ribosomal protein L10; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} (A:137-180) Length = 44 Score = 27.2 bits (61), Expect = 1.3 Identities = 9/42 (21%), Positives = 20/42 (47%) Query: 130 EGIRAGIISAIQSNATRLVRLLGTPQTQVVRAISAFVDKNQQ 171 E + A ++ +++ T LV L +V ++A +K + Sbjct: 3 EELYAMLVGRVKAPITGLVFALSGILRNLVYVLNAIKEKKSE 44 >3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genomics; HET: MSE ACO; 1.90A {Bacillus anthracis} PDB: 3e4f_A* (A:15-268) Length = 254 Score = 24.4 bits (53), Expect = 8.2 Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 3/44 (6%) Query: 128 DLE--GIRAGIISAIQSNATRLVRLLGTPQTQVVRAISAFVDKN 169 DL G++ G + S+ + + + G VV A+ + + Sbjct: 9 DLRKLGLKKGXTVIVHSSLSSIGWISGGAVA-VVEALXEVITEE 51 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.316 0.133 0.349 Gapped Lambda K H 0.267 0.0630 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,122,194 Number of extensions: 45962 Number of successful extensions: 130 Number of sequences better than 10.0: 1 Number of HSP's gapped: 126 Number of HSP's successfully gapped: 17 Length of query: 172 Length of database: 4,956,049 Length adjustment: 82 Effective length of query: 90 Effective length of database: 2,184,039 Effective search space: 196563510 Effective search space used: 196563510 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 51 (23.6 bits)