RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780145|ref|YP_003064558.1| 50S ribosomal protein L10
[Candidatus Liberibacter asiaticus str. psy62]
         (172 letters)



>d1zava1 d.58.62.1 (A:1-177) Ribosomal protein L10 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 177

 Score =  118 bits (296), Expect = 3e-28
 Identities = 49/175 (28%), Positives = 89/175 (50%), Gaps = 7/175 (4%)

Query: 1   MNRQGKSVEISELSKIFSSSGSIVVAHYKGISVAQIKDLRKKMREA---GGGVKVAKNRL 57
           + RQ K + + E+S+IF  +  I+ A + G +VA + +LR ++RE    G   +V KN L
Sbjct: 2   LTRQQKELIVKEMSEIFKKTSLILFADFLGFTVADLTELRSRLREKYGDGARFRVVKNTL 61

Query: 58  VKIAIRDTSIRGISDLFVGQSLIVY--SDSPVIAPKISVSFSND--NNEFRVLGGVVEKG 113
           + +A+++    G  +   G + ++Y     PV A KI  +F  D   +  R+ GG +E  
Sbjct: 62  LNLALKNAEYEGYEEFLKGPTAVLYVTEGDPVEAVKIIYNFYKDKKADLSRLKGGFLEGK 121

Query: 114 VLNQDSIKQIASLPDLEGIRAGIISAIQSNATRLVRLLGTPQTQVVRAISAFVDK 168
               + ++ IA LP  E + A ++  +++  T LV  L      +V  ++A  +K
Sbjct: 122 KFTAEEVENIAKLPSKEELYAMLVGRVKAPITGLVFALSGILRNLVYVLNAIKEK 176


>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
           161736]}
          Length = 321

 Score = 26.2 bits (57), Expect = 1.9
 Identities = 4/38 (10%), Positives = 12/38 (31%)

Query: 9   EISELSKIFSSSGSIVVAHYKGISVAQIKDLRKKMREA 46
            +    K  +      ++ Y       + D+ + M + 
Sbjct: 146 ALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQH 183


>d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 333

 Score = 25.4 bits (55), Expect = 2.8
 Identities = 6/27 (22%), Positives = 14/27 (51%)

Query: 48  GGVKVAKNRLVKIAIRDTSIRGISDLF 74
           G VK+ K + V + +  T++  +  + 
Sbjct: 275 GAVKIRKGQAVTLMMDATNMPAVKAII 301


>d1jlxa2 b.42.3.1 (A:154-299) Agglutinin {Love-lies-bleeding
           (Amaranthus caudatus) [TaxId: 3567]}
          Length = 146

 Score = 24.0 bits (52), Expect = 6.3
 Identities = 6/20 (30%), Positives = 10/20 (50%)

Query: 84  DSPVIAPKISVSFSNDNNEF 103
            S    PK  V+F  +N ++
Sbjct: 2   KSIFQFPKGYVTFKGNNGKY 21


>d1uoua1 a.46.2.1 (A:33-100) Thymidine phosphorylase {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 68

 Score = 24.0 bits (52), Expect = 7.4
 Identities = 3/28 (10%), Positives = 13/28 (46%)

Query: 20 SGSIVVAHYKGISVAQIKDLRKKMREAG 47
             ++    +G+ + +   L + + ++G
Sbjct: 40 GAMLMAIRLRGMDLEETSVLTQALAQSG 67


>d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B
          subunit, PccB {Thermotoga maritima [TaxId: 2336]}
          Length = 251

 Score = 23.5 bits (50), Expect = 9.0
 Identities = 7/24 (29%), Positives = 14/24 (58%)

Query: 33 VAQIKDLRKKMREAGGGVKVAKNR 56
          + ++K + K++ + GG  KV K  
Sbjct: 7  IEELKKIEKEIEQGGGPEKVEKQH 30


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.133    0.349 

Gapped
Lambda     K      H
   0.267   0.0743    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 561,550
Number of extensions: 24369
Number of successful extensions: 73
Number of sequences better than 10.0: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 14
Length of query: 172
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 93
Effective length of database: 1,322,926
Effective search space: 123032118
Effective search space used: 123032118
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.0 bits)