254780146
50S ribosomal protein L1
GeneID in NCBI database: | 8209121 | Locus tag: | CLIBASIA_00125 |
Protein GI in NCBI database: | 254780146 | Protein Accession: | YP_003064559.1 |
Gene range: | -(29578, 30276) | Protein Length: | 232aa |
Gene description: | 50S ribosomal protein L1 | ||
COG prediction: | [J] Ribosomal protein L1 | ||
KEGG prediction: | rplA; 50S ribosomal protein L1; K02863 large subunit ribosomal protein L1 | ||
SEED prediction: | LSU ribosomal protein L1p (L10Ae) | ||
Pathway involved in KEGG: | Ribosome [PATH:las03010] | ||
Subsystem involved in SEED: | Ribosome LSU bacterial | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
---|
|
|
Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 232 | 50S ribosomal protein L1 [Candidatus Liberibacter asiat | |||
157704381 | 232 | 50S ribosomal subunit protein L1 [Candidatus Liberibact | 1 | 1e-129 | |
78355045 | 232 | putative 50S ribosomal subunit protein L1 [Candidatus L | 1 | 1e-129 | |
133872304 | 231 | 50S ribosomal subunit protein L1 [Candidatus Liberibact | 1 | 1e-116 | |
133872297 | 232 | 50S ribosomal subunit protein L1 [Candidatus Liberibact | 1 | 1e-104 | |
315122748 | 232 | 50S ribosomal protein L1 [Candidatus Liberibacter solan | 1 | 1e-103 | |
222148354 | 231 | 50S ribosomal protein L1 [Agrobacterium vitis S4] Lengt | 1 | 2e-92 | |
150396196 | 232 | 50S ribosomal protein L1 [Sinorhizobium medicae WSM419] | 1 | 3e-92 | |
227821744 | 232 | 50S ribosomal protein L1 [Sinorhizobium fredii NGR234] | 1 | 4e-92 | |
15965098 | 232 | 50S ribosomal protein L1 [Sinorhizobium meliloti 1021] | 1 | 2e-91 | |
163759403 | 232 | 50S ribosomal protein L1 [Hoeflea phototrophica DFL-43] | 1 | 8e-91 |
>gi|157704381|gb|ABV68880.1| 50S ribosomal subunit protein L1 [Candidatus Liberibacter asiaticus] Length = 232 | Back alignment and organism information |
---|
Score = 463 bits (1192), Expect = e-129, Method: Compositional matrix adjust. Identities = 231/232 (99%), Positives = 231/232 (99%) Query: 1 MVSKISKRMQQISQGIDRSALYGLSDAVVMLKERATARFDETVEIAMNLGIDPRHANQMV 60 MVSKISKRMQQISQGIDRSALYGLSDAVVMLKERATARFDETVEIAMNLGIDPRHANQMV Sbjct: 1 MVSKISKRMQQISQGIDRSALYGLSDAVVMLKERATARFDETVEIAMNLGIDPRHANQMV 60 Query: 61 RGVVTMPNGTGVNVRVAVFATSSKADEAREAGADIVGGEDLFEIVKGGQIDFDRCIATPD 120 RGVVTMPNGTGVNVRVAVFATSSKADEAREAGADIVGGEDLFEIVKGGQIDFDRCIATPD Sbjct: 61 RGVVTMPNGTGVNVRVAVFATSSKADEAREAGADIVGGEDLFEIVKGGQIDFDRCIATPD 120 Query: 121 MMPLVGRLGRILGPRGIMPNLRVGTVTTDVATAVRESKSGAVDFRSEKAGIIHAGIGKVS 180 MMPLVGRLGRILGPRGIMPNLRVGTVTTDVATAVRESKSGAVDFRSEKAGIIHAGIGKVS Sbjct: 121 MMPLVGRLGRILGPRGIMPNLRVGTVTTDVATAVRESKSGAVDFRSEKAGIIHAGIGKVS 180 Query: 181 FENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTMGCGIKVDLSSFSV 232 FENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSS MGCGIKVDLSSFSV Sbjct: 181 FENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSHMGCGIKVDLSSFSV 232 |
Species: Candidatus Liberibacter asiaticus Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|78355045|gb|ABB40597.1| putative 50S ribosomal subunit protein L1 [Candidatus Liberibacter asiaticus] Length = 232 | Back alignment and organism information |
---|
>gi|133872304|gb|ABO40223.1| 50S ribosomal subunit protein L1 [Candidatus Liberibacter africanus] Length = 231 | Back alignment and organism information |
---|
>gi|133872297|gb|ABO40217.1| 50S ribosomal subunit protein L1 [Candidatus Liberibacter americanus] Length = 232 | Back alignment and organism information |
---|
>gi|315122748|ref|YP_004063237.1| 50S ribosomal protein L1 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 232 | Back alignment and organism information |
---|
>gi|222148354|ref|YP_002549311.1| 50S ribosomal protein L1 [Agrobacterium vitis S4] Length = 231 | Back alignment and organism information |
---|
>gi|150396196|ref|YP_001326663.1| 50S ribosomal protein L1 [Sinorhizobium medicae WSM419] Length = 232 | Back alignment and organism information |
---|
>gi|227821744|ref|YP_002825714.1| 50S ribosomal protein L1 [Sinorhizobium fredii NGR234] Length = 232 | Back alignment and organism information |
---|
>gi|15965098|ref|NP_385451.1| 50S ribosomal protein L1 [Sinorhizobium meliloti 1021] Length = 232 | Back alignment and organism information |
---|
>gi|163759403|ref|ZP_02166489.1| 50S ribosomal protein L1 [Hoeflea phototrophica DFL-43] Length = 232 | Back alignment and organism information |
---|
Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 232 | 50S ribosomal protein L1 [Candidatus Liberibacter asiat | ||
PRK05424 | 230 | PRK05424, rplA, 50S ribosomal protein L1; Validated | 1e-106 | |
TIGR01169 | 227 | TIGR01169, rplA_bact, ribosomal protein L1, bacterial/c | 8e-93 | |
COG0081 | 228 | COG0081, RplA, Ribosomal protein L1 [Translation, ribos | 6e-77 | |
CHL00129 | 229 | CHL00129, rpl1, ribosomal protein L1; Reviewed | 1e-69 | |
cd00403 | 208 | cd00403, Ribosomal_L1, Ribosomal protein L1 | 2e-52 | |
KOG1569 | 323 | KOG1569, KOG1569, KOG1569, 50S ribosomal protein L1 [Tr | 5e-38 | |
PRK04203 | 215 | PRK04203, rpl1P, 50S ribosomal protein L1P; Reviewed | 8e-25 | |
PTZ00029 | 216 | PTZ00029, PTZ00029, 60S ribosomal protein L10a; Provisi | 4e-08 | |
PTZ00225 | 214 | PTZ00225, PTZ00225, 60S ribosomal protein L10a; Provisi | 0.003 | |
pfam00687 | 203 | pfam00687, Ribosomal_L1, Ribosomal protein L1p/L10e fam | 2e-79 | |
TIGR01170 | 141 | TIGR01170, rplA_mito, ribosomal protein L1, mitochondri | 2e-19 |
>gnl|CDD|180071 PRK05424, rplA, 50S ribosomal protein L1; Validated | Back alignment and domain information |
---|
>gnl|CDD|162232 TIGR01169, rplA_bact, ribosomal protein L1, bacterial/chloroplast | Back alignment and domain information |
---|
>gnl|CDD|30430 COG0081, RplA, Ribosomal protein L1 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
---|
>gnl|CDD|177051 CHL00129, rpl1, ribosomal protein L1; Reviewed | Back alignment and domain information |
---|
>gnl|CDD|88601 cd00403, Ribosomal_L1, Ribosomal protein L1 | Back alignment and domain information |
---|
>gnl|CDD|36782 KOG1569, KOG1569, KOG1569, 50S ribosomal protein L1 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
---|
>gnl|CDD|179783 PRK04203, rpl1P, 50S ribosomal protein L1P; Reviewed | Back alignment and domain information |
---|
>gnl|CDD|185405 PTZ00029, PTZ00029, 60S ribosomal protein L10a; Provisional | Back alignment and domain information |
---|
>gnl|CDD|140252 PTZ00225, PTZ00225, 60S ribosomal protein L10a; Provisional | Back alignment and domain information |
---|
>gnl|CDD|144329 pfam00687, Ribosomal_L1, Ribosomal protein L1p/L10e family | Back alignment and domain information |
---|
>gnl|CDD|162233 TIGR01170, rplA_mito, ribosomal protein L1, mitochondrial | Back alignment and domain information |
---|
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 232 | 50S ribosomal protein L1 [Candidatus Liberibacter asiat | ||
TIGR01169 | 227 | rplA_bact ribosomal protein L1; InterPro: IPR005878 Rib | 100.0 | |
PRK05424 | 232 | rplA 50S ribosomal protein L1; Validated | 100.0 | |
CHL00129 | 229 | rpl1 ribosomal protein L1; Reviewed | 100.0 | |
COG0081 | 228 | RplA Ribosomal protein L1 [Translation, ribosomal struc | 100.0 | |
pfam00687 | 203 | Ribosomal_L1 Ribosomal protein L1p/L10e family. This fa | 100.0 | |
PRK04203 | 216 | rpl1P 50S ribosomal protein L1P; Reviewed | 100.0 | |
PTZ00029 | 217 | 60S ribosomal protein L1/L10a; Provisional | 100.0 | |
PTZ00225 | 214 | 60S ribosomal protein L10a; Provisional | 100.0 | |
cd00403 | 208 | Ribosomal_L1 Ribosomal protein L1. The L1 protein, loca | 100.0 | |
KOG1569 | 323 | consensus | 100.0 | |
KOG1570 | 218 | consensus | 99.93 | |
TIGR01170 | 155 | rplA_mito ribosomal protein L1, mitochondrial; InterPro | 99.97 | |
KOG1685 | 343 | consensus | 99.0 | |
PTZ00029 | 217 | 60S ribosomal protein L1/L10a; Provisional | 93.48 |
>TIGR01169 rplA_bact ribosomal protein L1; InterPro: IPR005878 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
---|
>PRK05424 rplA 50S ribosomal protein L1; Validated | Back alignment and domain information |
---|
>CHL00129 rpl1 ribosomal protein L1; Reviewed | Back alignment and domain information |
---|
>COG0081 RplA Ribosomal protein L1 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
---|
>pfam00687 Ribosomal_L1 Ribosomal protein L1p/L10e family | Back alignment and domain information |
---|
>PRK04203 rpl1P 50S ribosomal protein L1P; Reviewed | Back alignment and domain information |
---|
>PTZ00029 60S ribosomal protein L1/L10a; Provisional | Back alignment and domain information |
---|
>PTZ00225 60S ribosomal protein L10a; Provisional | Back alignment and domain information |
---|
>cd00403 Ribosomal_L1 Ribosomal protein L1 | Back alignment and domain information |
---|
>KOG1569 consensus | Back alignment and domain information |
---|
>KOG1570 consensus | Back alignment and domain information |
---|
>TIGR01170 rplA_mito ribosomal protein L1, mitochondrial; InterPro: IPR005879 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
---|
>KOG1685 consensus | Back alignment and domain information |
---|
>PTZ00029 60S ribosomal protein L1/L10a; Provisional | Back alignment and domain information |
---|
Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 232 | 50S ribosomal protein L1 [Candidatus Liberibacter asiat | ||
2j01_C | 229 | Structure Of The Thermus Thermophilus 70s Ribosome | 3e-62 | |
2hgj_C | 229 | Fitting Of Components With Known Structure Into An | 6e-62 | |
1ml5_c | 228 | Crystal Structure Of The Ribosome At 5.5 A Resoluti | 5e-61 | |
2v49_C | 229 | Structure Of The Ribosome Recycling Factor Bound To | 8e-61 | |
1ad2_A | 228 | Ribosomal Protein L1 Mutant With Serine 179 Replace | 2e-60 | |
1zho_A | 228 | The Structure Of A Ribosomal Protein L1 In Complex | 1e-59 | |
2hw8_A | 228 | Structure Of Ribosomal Protein L1-Mrna Complex At 2 | 2e-59 | |
487d_H | 224 | Seven Ribosomal Proteins Fitted To A Cryo-Electron | 8e-59 | |
3fik_5 | 234 | Ternary Complex-Bound E.Coli 70s Ribosome. This Ent | 6e-55 | |
2rdo_9 | 233 | 50s Subunit With Ef-G(Gdpnp) And Rrf Bound Length = | 5e-54 | |
2gya_2 | 222 | Structure Of The 50s Subunit Of A Pre-Translocation | 2e-51 | |
3bbo_D | 352 | Homology Model For The Spinach Chloroplast 50s Subu | 8e-49 | |
3fin_C | 191 | T. Thermophilus 70s Ribosome In Complex With Mrna, | 3e-42 | |
2zkr_5 | 212 | Structure Of A Mammalian Ribosomal 60s Subunit With | 9e-18 | |
1dwu_A | 213 | Ribosomal Protein L1 Length = 213 | 2e-17 | |
1cjs_A | 219 | Crystal Structure Of Ribosomal Protein L1 From Meth | 1e-15 | |
1mzp_A | 217 | Structure Of The L1 Protuberance In The Ribosome Le | 1e-14 | |
1u63_A | 219 | The Structure Of A Ribosomal Protein L1-Mrna Comple | 4e-14 | |
2noq_G | 213 | Structure Of Ribosome-Bound Cricket Paralysis Virus | 1e-13 | |
3e1b_Z | 213 | Structure Of The 50s Subunit Of E. Coli Ribosome In | 1e-13 | |
1s1i_A | 217 | Structure Of The Ribosomal 80s-Eef2-Sordarin Comple | 3e-13 | |
2ov7_A | 137 | The First Domain Of The Ribosomal Protein L1 From T | 2e-16 | |
2ov7_A | 137 | The First Domain Of The Ribosomal Protein L1 From T | 2e-16 | |
2ftc_A | 189 | Structural Model For The Large Subunit Of The Mamma | 6e-16 | |
3izr_A | 216 | Localization Of The Large Subunit Ribosomal Protein | 1e-13 |
gi|116668234|pdb|2J01|C Chain C, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. Length = 229 | Back alignment and structure |
Score = 242 bits (617), Expect = 3e-62, Method: Composition-based stats. Identities = 101/229 (44%), Positives = 155/229 (67%), Gaps = 1/229 (0%) Query: 2 VSKISKRMQQISQGIDRSALYGLSDAVVMLKERATARFDETVEIAMNLGIDPRHANQMVR 61 + K KR + + + +D + +Y + +A ++KE ATA+FDETVE+ LGIDPR ++Q VR Sbjct: 1 MPKHGKRYRALLEKVDPNKVYTIDEAARLVKELATAKFDETVEVHAKLGIDPRRSDQNVR 60 Query: 62 GVVTMPNGTGVNVRVAVFATSSKADEAREAGADIVGGEDLFEIVKGGQIDFDRCIATPDM 121 G V++P+G G VRV A K EA EAGAD VGGE++ + + G +DFD +ATPD+ Sbjct: 61 GTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDV 120 Query: 122 MPLV-GRLGRILGPRGIMPNLRVGTVTTDVATAVRESKSGAVDFRSEKAGIIHAGIGKVS 180 M V +LGRILGPRG++PN + GTV ++ +RE K+G ++FR++K G IHA +GK S Sbjct: 121 MGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKAS 180 Query: 181 FENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTMGCGIKVDLSS 229 F +K+ +N+ AF+ A+ KP AKG +++ V +++TMG ++++ S Sbjct: 181 FPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRINPHS 229 |
>gi|119389735|pdb|2HGJ|C Chain C, Crystal Structure Of The 70s Thermus Thermophilus Ribosome Showing How The 16s 3'-End Mimicks Mrna E And P Codons. This Entry 2hgj Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 2hgi. Length = 229 | Back alignment and structure |
>gi|28373722|pdb|1ML5|CC Chain c, Structure Of The E. Coli Ribosomal Termination Complex With Release Factor 2 Length = 228 | Back alignment and structure |
>gi|157836577|pdb|2V49|C Chain C, Structure Of The Ribosome Recycling Factor Bound To The Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And Trna-Fmet (Part 4 Of 4). This File Contains The 50s Subunit Of Molecule 2 Length = 229 | Back alignment and structure |
>gi|157829807|pdb|1AD2|A Chain A, Ribosomal Protein L1 Mutant With Serine 179 Replaced By Cysteine Length = 228 | Back alignment and structure |
>gi|109156960|pdb|1ZHO|A Chain A, The Structure Of A Ribosomal Protein L1 In Complex With Mrna Length = 228 | Back alignment and structure |
>gi|122920476|pdb|2HW8|A Chain A, Structure Of Ribosomal Protein L1-Mrna Complex At 2.1 Resolution Length = 228 | Back alignment and structure |
>gi|7767184|pdb|487D|H Chain H, Seven Ribosomal Proteins Fitted To A Cryo-Electron Microscopic Map Of The Large 50s Subunit At 7.5 Angstroms Resolution Length = 224 | Back alignment and structure |
gi|224510737|pdb|3FIK|5 Chain 5, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 50s Subunit. Length = 234 | Back alignment and structure |
>gi|169404633|pdb|2RDO|9 Chain 9, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound Length = 233 | Back alignment and structure |
>gi|116667432|pdb|2GYA|2 Chain 2, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 222 | Back alignment and structure |
gi|189096126|pdb|3BBO|D Chain D, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 352 | Back alignment and structure |
>gi|224510781|pdb|3FIN|C Chain C, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef-Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 50s Subunit Length = 191 | Back alignment and structure |
gi|187609331|pdb|2ZKR|5 Chain 5, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 212 | Back alignment and structure |
gi|12084594|pdb|1DWU|A Chain A, Ribosomal Protein L1 Length = 213 | Back alignment and structure |
gi|8569324|pdb|1CJS|A Chain A, Crystal Structure Of Ribosomal Protein L1 From Methanococcus Jannaschii Length = 219 | Back alignment and structure |
>gi|28373823|pdb|1MZP|A Chain A, Structure Of The L1 Protuberance In The Ribosome Length = 217 | Back alignment and structure |
>gi|66360220|pdb|1U63|A Chain A, The Structure Of A Ribosomal Protein L1-Mrna Complex Length = 219 | Back alignment and structure |
>gi|119390529|pdb|2NOQ|G Chain G, Structure Of Ribosome-Bound Cricket Paralysis Virus Ires Rna Length = 213 | Back alignment and structure |
>gi|256032398|pdb|3E1B|Z Chain Z, Structure Of The 50s Subunit Of E. Coli Ribosome In Pre- Accommodation State Length = 213 | Back alignment and structure |
gi|49258839|pdb|1S1I|A Chain A, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h. Length = 217 | Back alignment and structure |
>gi|163930938|pdb|2OV7|A Chain A, The First Domain Of The Ribosomal Protein L1 From Thermus Thermophilus Length = 137 | Back alignment and structure |
>gi|163930938|pdb|2OV7|A Chain A, The First Domain Of The Ribosomal Protein L1 From Thermus Thermophilus Length = 137 | Back alignment and structure |
>gi|99032307|pdb|2FTC|A Chain A, Structural Model For The Large Subunit Of The Mammalian Mitochondrial Ribosome Length = 189 | Back alignment and structure |
>gi|315113249|pdb|3IZR|A Chain A, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 216 | Back alignment and structure |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 232 | 50S ribosomal protein L1 [Candidatus Liberibacter asiat | ||
2wwq_5 | 234 | 50S ribosomal protein L1; ribosomal protein, ribonucleo | 5e-71 | |
1ad2_A | 228 | TL2, ribosomal protein L1; RNA binding, protein synthes | 3e-65 | |
3bbo_D | 352 | Ribosomal protein L1; large ribosomal subunit, spinach | 3e-64 | |
3fik_5 | 234 | 50S ribosomal protein L1; ribosome, decoding, tRNA, EF- | 5e-63 | |
1mzp_A | 217 | 50S ribosomal protein L1P; ribosome, RNA-protein comple | 1e-49 | |
1i2a_A | 219 | 50S ribosomal protein L1P; primary rRNA-binding protein | 1e-47 | |
2noq_G | 213 | 60S ribosomal protein L1; IRES RNA, ribosome, translati | 9e-42 | |
2zkr_5 | 212 | 60S ribosomal protein L10A; protein-RNA complex, 60S ri | 5e-33 | |
2ftc_A | 189 | Mitochondrial ribosomal protein L1; mitochondrial ribos | 7e-41 | |
2ov7_A | 137 | 50S ribosomal protein L1; 2.30A {Thermus thermophilus} | 1e-24 | |
2ov7_A | 137 | 50S ribosomal protein L1; 2.30A {Thermus thermophilus} | 2e-18 |
>2wwq_5 50S ribosomal protein L1; ribosomal protein, ribonucleoprotein, nucleotide-binding, protein biosynthesis, translation, zinc-finger; HET: 5MU; 5.80A {Escherichia coli} PDB: 3fik_5 3kcr_5 2rdo_9 2gya_2 2gyc_2 Length = 234 | Back alignment and structure |
---|
Score = 262 bits (670), Expect = 5e-71 Identities = 115/229 (50%), Positives = 175/229 (76%) Query: 3 SKISKRMQQISQGIDRSALYGLSDAVVMLKERATARFDETVEIAMNLGIDPRHANQMVRG 62 +K++KRM+ I + +D + Y +++A+ +LKE ATA+F E+V++A+NLGID R ++Q VRG Sbjct: 2 AKLTKRMRVIREKVDATKQYDINEAIALLKELATAKFVESVDVAVNLGIDARKSDQNVRG 61 Query: 63 VVTMPNGTGVNVRVAVFATSSKADEAREAGADIVGGEDLFEIVKGGQIDFDRCIATPDMM 122 +P+GTG +VRVAVF + A+ A+ AGA++VG EDL + +K G+++FD IA+PD M Sbjct: 62 ATVLPHGTGRSVRVAVFTQGANAEAAKAAGAELVGMEDLADQIKKGEMNFDVVIASPDAM 121 Query: 123 PLVGRLGRILGPRGIMPNLRVGTVTTDVATAVRESKSGAVDFRSEKAGIIHAGIGKVSFE 182 +VG+LG++LGPRG+MPN +VGTVT +VA AV+ +K+G V +R++K GIIH IGKV F+ Sbjct: 122 RVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFD 181 Query: 183 NKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTMGCGIKVDLSSFS 231 K++EN+ A + A+ KAKP+ AKG Y+K+V++S+TMG G+ VD + S Sbjct: 182 ADKLKENLEALLVALKKAKPTQAKGVYIKKVSISTTMGAGVAVDQAGLS 230 |
>1ad2_A TL2, ribosomal protein L1; RNA binding, protein synthesis, mutant; 1.90A {Thermus thermophilus} SCOP: e.24.1.1 PDB: 1eg0_N 1vsa_A 1vsp_A 2hgj_C 2hgq_C 2hgu_C 1zho_A 1ml5_c* 1yl3_C 1giy_C 2hw8_A 2j01_C 2j03_C 2jl6_C 2jl8_C 2om7_K* 2v47_C 2wdi_C 2wdj_C 2wdl_C ... Length = 228 | Back alignment and structure |
---|
>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 352 | Back alignment and structure |
---|
>3fik_5 50S ribosomal protein L1; ribosome, decoding, tRNA, EF-TU, ternary complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding; 6.70A {Escherichia coli} PDB: 2rdo_9 2gya_2 2gyc_2 Length = 234 | Back alignment and structure |
---|
>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A {Sulfolobus acidocaldarius} SCOP: e.24.1.1 PDB: 1pnu_5 1pny_5 1vor_7 1vou_7 1vow_7 1voy_7 1vp0_7 3e1b_Z 3e1d_Z Length = 217 | Back alignment and structure |
---|
>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein, translational repressor, ribosome; 1.85A {Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB: 1cjs_A 1u63_A 1dwu_A Length = 219 | Back alignment and structure |
---|
>2noq_G 60S ribosomal protein L1; IRES RNA, ribosome, translation, internal initiation; 7.30A {Saccharomyces cerevisiae} PDB: 1s1i_A Length = 213 | Back alignment and structure |
---|
>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 212 | Back alignment and structure |
---|
>2ftc_A Mitochondrial ribosomal protein L1; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} Length = 189 | Back alignment and structure |
---|
>2ov7_A 50S ribosomal protein L1; 2.30A {Thermus thermophilus} PDB: 2oum_A 2vpl_A Length = 137 | Back alignment and structure |
---|
>2ov7_A 50S ribosomal protein L1; 2.30A {Thermus thermophilus} PDB: 2oum_A 2vpl_A Length = 137 | Back alignment and structure |
---|
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 232 | 50S ribosomal protein L1 [Candidatus Liberibacter asiat | ||
2wwq_5 | 234 | 50S ribosomal protein L1; ribosomal protein, ribonucleo | 100.0 | |
3bbo_D | 352 | Ribosomal protein L1; large ribosomal subunit, spinach | 100.0 | |
1ad2_A | 228 | TL2, ribosomal protein L1; RNA binding, protein synthes | 100.0 | |
1i2a_A | 219 | 50S ribosomal protein L1P; primary rRNA-binding protein | 100.0 | |
1mzp_A | 217 | 50S ribosomal protein L1P; ribosome, RNA-protein comple | 100.0 | |
2zkr_5 | 212 | 60S ribosomal protein L10A; protein-RNA complex, 60S ri | 100.0 | |
2noq_G | 213 | 60S ribosomal protein L1; IRES RNA, ribosome, translati | 100.0 | |
2ov7_A | 137 | 50S ribosomal protein L1; 2.30A {Thermus thermophilus} | 100.0 | |
2ftc_A | 189 | Mitochondrial ribosomal protein L1; mitochondrial ribos | 100.0 |
>2wwq_5 50S ribosomal protein L1; ribosomal protein, ribonucleoprotein, nucleotide-binding, protein biosynthesis, translation, zinc-finger; HET: 5MU; 5.80A {Escherichia coli} PDB: 3fik_5 3kcr_5 2rdo_9 2gya_2 2gyc_2 | Back alignment and structure |
---|
Probab=100.00 E-value=0 Score=497.26 Aligned_cols=230 Identities=50% Similarity=0.862 Sum_probs=227.3 Q ss_pred CCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCEEEEEC Q ss_conf 74223437989851384768898999999986087899862999999537876454430137995277886540699975 Q gi|254780146|r 2 VSKISKRMQQISQGIDRSALYGLSDAVVMLKERATARFDETVEIAMNLGIDPRHANQMVRGVVTMPNGTGVNVRVAVFAT 81 (232) Q Consensus 2 m~k~~Kr~~~~~~~~~~~~~ysi~eAi~~lk~~~~~kf~esvel~i~L~id~~k~~~~irg~v~LPh~~gk~~kV~Vf~~ 81 (232) |+|+||||+.+.+.+|..+.|+++||++++|+.+.++|+||+|++|+|++|++|++++|||++.|||++|++.+|||||+ T Consensus 1 m~k~~kr~k~~~~~~d~~k~y~i~eAi~~lk~~~~~kF~etvel~i~L~~d~~k~~~~i~g~v~LP~~~~k~~ki~v~a~ 80 (234) T 2wwq_5 1 MAKLTKRMRVIREKVDATKQYDINEAIALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQ 80 (234) T ss_dssp CCCCCHHHHHHHTTSCCSSEECHHHHHHHHHHTCCCSSCCEEEEEEEECSCCCSSTTSCCEEEECSSCCSSCCCEEEECS T ss_pred CCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCEECCEEECCCCCCCCEEEEEECC T ss_conf 99536899998861553566699999999997177998764899999788777666302213304678986259999738 Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCC Q ss_conf 04457687412000027899999751753334688644677888864332001001742233566655799999986011 Q gi|254780146|r 82 SSKADEAREAGADIVGGEDLFEIVKGGQIDFDRCIATPDMMPLVGRLGRILGPRGIMPNLRVGTVTTDVATAVRESKSGA 161 (232) Q Consensus 82 ~~~~~~Ak~aGa~~vg~~eli~~i~~~~~~fd~~iAt~~~m~~i~klgriLGPkglMPn~k~GTv~~di~~~i~~~k~g~ 161 (232) ++.+++|+++||+++|++||+++|+++|++||+|+|||++|+++++||++||||||||||+.||+++|+.++|+++++|+ T Consensus 81 ~~~~~~Ak~aGa~~vg~~dLi~~Ik~~~~~~d~~ia~~~~m~~l~klg~iLGprGlMP~pk~GTv~~d~~~~i~~~k~g~ 160 (234) T 2wwq_5 81 GANAEAAKAAGAELVGMEDLADQIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQ 160 (234) T ss_dssp SSCHHHHHHHTCSEECSHHHHHHHHHTCCCSSEEEECHHHHHHTTSSCSCCCSSCCSCCTTTTCBCSCSHHHHHHHHHHE T ss_pred CHHHHHHHHCCCCEECHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCE T ss_conf 15799998769989753776655424551026332377788888876541564568999998976704999999985786 Q ss_pred CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCEEEECHHCC Q ss_conf 1022357526787531577898999999999999998608662544337799999238972774001005 Q gi|254780146|r 162 VDFRSEKAGIIHAGIGKVSFENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTMGCGIKVDLSSFS 231 (232) Q Consensus 162 i~~r~~k~g~i~~~IG~~~m~~e~i~eNi~~~~~~i~~~kp~~~kg~~Ik~v~lssTmGp~i~id~~~~~ 231 (232) ++||.++.|++|++||+++|+++||.||+.+++++|.+++|.+.+|.||+++|||||||||++||+.+|+ T Consensus 161 v~~r~~k~g~i~~~IG~~~m~~e~L~eNi~a~l~~i~~~~p~~~kg~~Ik~v~lksTMGp~i~id~~~~~ 230 (234) T 2wwq_5 161 VRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPTQAKGVYIKKVSISTTMGAGVAVDQAGLS 230 (234) T ss_dssp EEECCSSSCEEEEEEEETTSCHHHHHHHHHHHHHHHHHSCCSSCCSCCEEEEEEEESSSCEEEESSSCCC T ss_pred EEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEHHHHH T ss_conf 9994167755887753456898999999999999999739653467458899998998998898868956 |
>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} | Back alignment and structure |
---|
>1ad2_A TL2, ribosomal protein L1; RNA binding, protein synthesis, mutant; 1.90A {Thermus thermophilus} SCOP: e.24.1.1 PDB: 1vsa_A 1eg0_N 1vsp_A 2hgj_C 2hgq_C 2hgu_C 1zho_A 1ml5_c* 1yl3_C 1giy_C 2hw8_A 2j01_C 2j03_C 2jl6_C 2jl8_C 2om7_K* 2v47_C 2wdi_C 2wdj_C 2wdl_C ... | Back alignment and structure |
---|
>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein, translational repressor, ribosome; 1.85A {Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB: 1cjs_A 1u63_A 1dwu_A | Back alignment and structure |
---|
>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A {Sulfolobus acidocaldarius} SCOP: e.24.1.1 PDB: 1pnu_5 1pny_5 1vor_7 1vou_7 1vow_7 1voy_7 1vp0_7 3e1b_Z 3e1d_Z | Back alignment and structure |
---|
>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} | Back alignment and structure |
---|
>2noq_G 60S ribosomal protein L1; IRES RNA, ribosome, translation, internal initiation; 7.30A {Saccharomyces cerevisiae} PDB: 3jyw_A 1s1i_A | Back alignment and structure |
---|
>2ov7_A 50S ribosomal protein L1; 2.30A {Thermus thermophilus} PDB: 2oum_A 2vpl_A | Back alignment and structure |
---|
>2ftc_A Mitochondrial ribosomal protein L1; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} | Back alignment and structure |
---|
Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | E-value |
232 | 50S ribosomal protein L1 [Candidatus Liberibacter asiat | |||
d1ad2a_ | 224 | e.24.1.1 (A:) Ribosomal protein L1 {Thermus thermophilu | 4e-63 | |
d1i2aa_ | 212 | e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Methanococ | 1e-38 | |
d1mzpa_ | 217 | e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Sulfolobus | 2e-38 |
>d1ad2a_ e.24.1.1 (A:) Ribosomal protein L1 {Thermus thermophilus [TaxId: 274]} Length = 224 | Back information, alignment and structure |
---|
class: Multi-domain proteins (alpha and beta) fold: Ribosomal protein L1 superfamily: Ribosomal protein L1 family: Ribosomal protein L1 domain: Ribosomal protein L1 species: Thermus thermophilus [TaxId: 274] Score = 234 bits (599), Expect = 4e-63 Identities = 100/224 (44%), Positives = 152/224 (67%), Gaps = 1/224 (0%) Query: 7 KRMQQISQGIDRSALYGLSDAVVMLKERATARFDETVEIAMNLGIDPRHANQMVRGVVTM 66 KR + + + +D + +Y + +A ++KE ATA+FDETVE+ LGIDPR ++Q VRG V++ Sbjct: 1 KRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSL 60 Query: 67 PNGTGVNVRVAVFATSSKADEAREAGADIVGGEDLFEIVKGGQIDFDRCIATPDMMPLVG 126 P+G G VRV A K EA EAGAD VGGE++ + + G +DFD +ATPD+M VG Sbjct: 61 PHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVG 120 Query: 127 R-LGRILGPRGIMPNLRVGTVTTDVATAVRESKSGAVDFRSEKAGIIHAGIGKVSFENKK 185 LGRILGPRG++PN + GTV ++ +RE K+G ++FR++K G IHA +GK F +K Sbjct: 121 SKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKACFPPEK 180 Query: 186 IEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTMGCGIKVDLSS 229 + +N+ AF+ A+ KP AKG +++ V +++TMG ++++ S Sbjct: 181 LADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRINPHS 224 |
>d1i2aa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 212 | Back information, alignment and structure |
---|
>d1mzpa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 217 | Back information, alignment and structure |
---|
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | Probability |
Target | 232 | 50S ribosomal protein L1 [Candidatus Liberibacter asiat | ||
d1ad2a_ | 224 | Ribosomal protein L1 {Thermus thermophilus [TaxId: 274] | 100.0 | |
d1mzpa_ | 217 | Ribosomal protein L1 {Archaeon Sulfolobus acidocaldariu | 100.0 | |
d1i2aa_ | 212 | Ribosomal protein L1 {Archaeon Methanococcus jannaschii | 100.0 |
>d1ad2a_ e.24.1.1 (A:) Ribosomal protein L1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
---|
class: Multi-domain proteins (alpha and beta) fold: Ribosomal protein L1 superfamily: Ribosomal protein L1 family: Ribosomal protein L1 domain: Ribosomal protein L1 species: Thermus thermophilus [TaxId: 274] Probab=100.00 E-value=0 Score=484.29 Aligned_cols=223 Identities=45% Similarity=0.796 Sum_probs=218.9 Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCEEEEECHHHHH Q ss_conf 43798985138476889899999998608789986299999953787645443013799527788654069997504457 Q gi|254780146|r 7 KRMQQISQGIDRSALYGLSDAVVMLKERATARFDETVEIAMNLGIDPRHANQMVRGVVTMPNGTGVNVRVAVFATSSKAD 86 (232) Q Consensus 7 Kr~~~~~~~~~~~~~ysi~eAi~~lk~~~~~kf~esvel~i~L~id~~k~~~~irg~v~LPh~~gk~~kV~Vf~~~~~~~ 86 (232) |||+++.+.+|..+.|+++||+++||+.+.++|+||||++++|++|++|++++|||+|.|||++|++.+|||||+++.++ T Consensus 1 kr~~~~~~~~d~~k~ysi~EAi~~lk~~~~~kF~esvel~i~L~~~~~k~~~~i~g~v~LP~~~~k~~ki~v~~~~e~~~ 80 (224) T d1ad2a_ 1 KRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIK 80 (224) T ss_dssp CCCTTTTTSCCTTCCBCHHHHHHHHHTTCCSSSCCEEEEEEEESSCTTCGGGCCEEEEECSSSCSTTSCEEEECCTHHHH T ss_pred CCHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCEEEEEECCHHHHH T ss_conf 94677765067667769999999999718899995299999974566655554312677414666640378854637799 Q ss_pred HHHHCCCCCCCHHHHHHHHHCCCCCCCEEEECHHHHHHHH-HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCC Q ss_conf 6874120000278999997517533346886446778888-643320010017422335666557999999860111022 Q gi|254780146|r 87 EAREAGADIVGGEDLFEIVKGGQIDFDRCIATPDMMPLVG-RLGRILGPRGIMPNLRVGTVTTDVATAVRESKSGAVDFR 165 (232) Q Consensus 87 ~Ak~aGa~~vg~~eli~~i~~~~~~fd~~iAt~~~m~~i~-klgriLGPkglMPn~k~GTv~~di~~~i~~~k~g~i~~r 165 (232) +|+++||++||++|++++|+++|++||+|||||+||++++ +|||+||||||||||+.||+++|+.++|+++++|+++|| T Consensus 81 ~Ak~aGa~~vg~~eli~ki~~~~~~fd~~ia~~~~m~~v~~~lgriLGprGlMP~pk~Gtv~~di~~~v~~~k~g~v~~r 160 (224) T d1ad2a_ 81 EAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFR 160 (224) T ss_dssp HHHHTTCSEEECGGGHHHHHTTCCCCSEEEECGGGHHHHHHHHHHHHHHHTCSCCTTTTCBCSCHHHHHHHHHTTEEEEE T ss_pred HHHHCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEE T ss_conf 98766762007377888875577530068868999999998640204765679987778866449999999868848986 Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCEEEECHH Q ss_conf 3575267875315778989999999999999986086625443377999992389727740010 Q gi|254780146|r 166 SEKAGIIHAGIGKVSFENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTMGCGIKVDLSS 229 (232) Q Consensus 166 ~~k~g~i~~~IG~~~m~~e~i~eNi~~~~~~i~~~kp~~~kg~~Ik~v~lssTmGp~i~id~~~ 229 (232) +++.|++|++||+++|+++||.||+.+++++|.+++|.+.+|.||+++|||||||||++||.+| T Consensus 161 ~~k~g~i~~~IG~~~m~~e~i~eNi~~~i~~i~~~~p~~~k~~~ik~v~l~sTmGp~~~id~~s 224 (224) T d1ad2a_ 161 NDKTGAIHAPVGKACFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRINPHS 224 (224) T ss_dssp CCTTSEEEEEEEETTSCHHHHHHHHHHHHHHHHTTCCTTCCSCSEEEEEEECTTSCCEEECTTC T ss_pred ECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEECCCC T ss_conf 4787545102210248989999999999999998495645787486999989999897839999 |
>d1mzpa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
---|
>d1i2aa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
---|
Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 232 | 50S ribosomal protein L1 [Candidatus Liberibacter | ||
2ftc_A_ | 189 | (A:) Mitochondrial ribosomal protein L1; mitochond | 1e-48 | |
2ov7_A_18-137 | 120 | (A:18-137) 50S ribosomal protein L1; 2.30A {Thermu | 3e-33 | |
3fik_5_1-71_134-234 | 172 | (5:1-71,5:134-234) 50S ribosomal protein L1; ribos | 3e-27 | |
3bbo_D_184-271 | 88 | (D:184-271) Ribosomal protein L1; large ribosomal | 8e-32 | |
1ad2_A_69-159 | 91 | (A:69-159) TL2, ribosomal protein L1; RNA binding, | 5e-28 | |
1i2a_A_55-148 | 94 | (A:55-148) 50S ribosomal protein L1P; primary rRNA | 2e-25 | |
2zkr_5_55-147 | 93 | (5:55-147) 60S ribosomal protein L10A; protein-RNA | 2e-25 | |
2noq_G_57-149 | 93 | (G:57-149) 60S ribosomal protein L1; IRES RNA, rib | 8e-25 | |
1mzp_A_59-152 | 94 | (A:59-152) 50S ribosomal protein L1P; ribosome, RN | 4e-24 | |
3fik_5_72-133 | 62 | (5:72-133) 50S ribosomal protein L1; ribosome, dec | 8e-24 | |
3fik_5_1-71_134-234 | 172 | (5:1-71,5:134-234) 50S ribosomal protein L1; ribos | 3e-22 | |
3bbo_D_1-183_272-352 | 264 | (D:1-183,D:272-352) Ribosomal protein L1; large ri | 4e-22 | |
1ad2_A_1-68_160-228 | 137 | (A:1-68,A:160-228) TL2, ribosomal protein L1; RNA | 1e-22 | |
1i2a_A_1-54_149-219 | 125 | (A:1-54,A:149-219) 50S ribosomal protein L1P; prim | 3e-13 | |
1mzp_A_1-58_153-217 | 123 | (A:1-58,A:153-217) 50S ribosomal protein L1P; ribo | 1e-13 | |
2zkr_5_1-54_148-212 | 119 | (5:1-54,5:148-212) 60S ribosomal protein L10A; pro | 5e-13 | |
3bbo_D_1-183_272-352 | 264 | (D:1-183,D:272-352) Ribosomal protein L1; large ri | 1e-23 | |
1ad2_A_1-68_160-228 | 137 | (A:1-68,A:160-228) TL2, ribosomal protein L1; RNA | 1e-22 | |
1i2a_A_1-54_149-219 | 125 | (A:1-54,A:149-219) 50S ribosomal protein L1P; prim | 2e-19 | |
2noq_G_1-56_150-213 | 120 | (G:1-56,G:150-213) 60S ribosomal protein L1; IRES | 3e-18 | |
1mzp_A_1-58_153-217 | 123 | (A:1-58,A:153-217) 50S ribosomal protein L1P; ribo | 1e-17 | |
2zkr_5_1-54_148-212 | 119 | (5:1-54,5:148-212) 60S ribosomal protein L10A; pro | 2e-17 |
>2ftc_A (A:) Mitochondrial ribosomal protein L1; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus}Length = 189 | Back alignment and structure |
---|
Score = 187 bits (476), Expect = 1e-48 Identities = 36/191 (18%), Positives = 82/191 (42%), Gaps = 6/191 (3%) Query: 43 VEIAMNLGIDPRHANQMVRGVVTMPNGTGVNVRVAVFAT--SSKADEAREAGADIVGGED 100 +++ +++ + + + V+++P + T +S+ A E GA GG Sbjct: 1 LDLTLDMALGKKKNVEPFTSVLSLPYPFASEINKVAVFTENASEVKIAEENGAAFAGGTS 60 Query: 101 LFEIVKGGQIDFDRCIATPDMMPLVGRLGRILGPRGIMPNLRVGTVTTDVATAVRESKSG 160 L + + +I D +A P++MP + RL + L + + ++ D+ + K+G Sbjct: 61 LIQKIWDDEIVADFYVAVPEIMPELNRLRKKLNKKYPKLS--RNSIGRDIPKMLELFKNG 118 Query: 161 -AVDFRSEKAGIIHAGIGKVSFENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTM 219 + E+ + I + + +I N+ A ++ V + +P G +V R L S+ Sbjct: 119 HEIKVDEERENFLQTKIATLDMSSDQIAANLQAVINEVCRHRPL-NLGPFVVRAFLRSST 177 Query: 220 GCGIKVDLSSF 230 G+ + + Sbjct: 178 SEGLLLKIDPL 188 |
>2ov7_A (A:18-137) 50S ribosomal protein L1; 2.30A {Thermus thermophilus} PDB: 2oum_A 2vpl_ALength = 120 | Back alignment and structure |
---|
>3fik_5 (5:1-71,5:134-234) 50S ribosomal protein L1; ribosome, decoding, tRNA, EF-TU, ternary complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding; 6.70A {Escherichia coli} PDB: 2rdo_9 2gya_2 2gyc_2Length = 172 | Back alignment and structure |
---|
>3bbo_D (D:184-271) Ribosomal protein L1; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}Length = 88 | Back alignment and structure |
---|
>1ad2_A (A:69-159) TL2, ribosomal protein L1; RNA binding, protein synthesis, mutant; 1.90A {Thermus thermophilus}Length = 91 | Back alignment and structure |
---|
>1i2a_A (A:55-148) 50S ribosomal protein L1P; primary rRNA-binding protein, translational repressor, ribosome; 1.85A {Methanocaldococcus jannaschii}Length = 94 | Back alignment and structure |
---|
>2zkr_5 (5:55-147) 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}Length = 93 | Back alignment and structure |
---|
>2noq_G (G:57-149) 60S ribosomal protein L1; IRES RNA, ribosome, translation, internal initiation; 7.30A {Saccharomyces cerevisiae} PDB: 1s1i_ALength = 93 | Back alignment and structure |
---|
>1mzp_A (A:59-152) 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A {Sulfolobus acidocaldarius}Length = 94 | Back alignment and structure |
---|
>3fik_5 (5:72-133) 50S ribosomal protein L1; ribosome, decoding, tRNA, EF-TU, ternary complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding; 6.70A {Escherichia coli} PDB: 2rdo_9 2gya_2 2gyc_2Length = 62 | Back alignment and structure |
---|
>3fik_5 (5:1-71,5:134-234) 50S ribosomal protein L1; ribosome, decoding, tRNA, EF-TU, ternary complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding; 6.70A {Escherichia coli} PDB: 2rdo_9 2gya_2 2gyc_2Length = 172 | Back alignment and structure |
---|
>3bbo_D (D:1-183,D:272-352) Ribosomal protein L1; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}Length = 264 | Back alignment and structure |
---|
>1ad2_A (A:1-68,A:160-228) TL2, ribosomal protein L1; RNA binding, protein synthesis, mutant; 1.90A {Thermus thermophilus}Length = 137 | Back alignment and structure |
---|
>1i2a_A (A:1-54,A:149-219) 50S ribosomal protein L1P; primary rRNA-binding protein, translational repressor, ribosome; 1.85A {Methanocaldococcus jannaschii}Length = 125 | Back alignment and structure |
---|
>1mzp_A (A:1-58,A:153-217) 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A {Sulfolobus acidocaldarius}Length = 123 | Back alignment and structure |
---|
>2zkr_5 (5:1-54,5:148-212) 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}Length = 119 | Back alignment and structure |
---|
>3bbo_D (D:1-183,D:272-352) Ribosomal protein L1; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}Length = 264 | Back alignment and structure |
---|
>1ad2_A (A:1-68,A:160-228) TL2, ribosomal protein L1; RNA binding, protein synthesis, mutant; 1.90A {Thermus thermophilus}Length = 137 | Back alignment and structure |
---|
>1i2a_A (A:1-54,A:149-219) 50S ribosomal protein L1P; primary rRNA-binding protein, translational repressor, ribosome; 1.85A {Methanocaldococcus jannaschii}Length = 125 | Back alignment and structure |
---|
>2noq_G (G:1-56,G:150-213) 60S ribosomal protein L1; IRES RNA, ribosome, translation, internal initiation; 7.30A {Saccharomyces cerevisiae} PDB: 1s1i_ALength = 120 | Back alignment and structure |
---|
>1mzp_A (A:1-58,A:153-217) 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A {Sulfolobus acidocaldarius}Length = 123 | Back alignment and structure |
---|
>2zkr_5 (5:1-54,5:148-212) 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}Length = 119 | Back alignment and structure |
---|
Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 232 | 50S ribosomal protein L1 [Candidatus Liberibacter asiat | ||
2ftc_A_ | 189 | Mitochondrial ribosomal protein L1; mitochondrial | 100.0 | |
2zkr_5_1-54_148-212 | 119 | 60S ribosomal protein L10A; protein-RNA complex, 6 | 99.96 | |
1i2a_A_1-54_149-219 | 125 | 50S ribosomal protein L1P; primary rRNA-binding pr | 99.96 | |
2noq_G_1-56_150-213 | 120 | 60S ribosomal protein L1; IRES RNA, ribosome, tran | 99.85 | |
3fik_5_1-71_134-234 | 172 | 50S ribosomal protein L1; ribosome, decoding, tRNA | 100.0 | |
3bbo_D_1-183_272-352 | 264 | Ribosomal protein L1; large ribosomal subunit, spi | 100.0 | |
1ad2_A_1-68_160-228 | 137 | TL2, ribosomal protein L1; RNA binding, protein sy | 100.0 | |
1mzp_A_1-58_153-217 | 123 | 50S ribosomal protein L1P; ribosome, RNA-protein c | 99.96 | |
1ad2_A_69-159 | 91 | TL2, ribosomal protein L1; RNA binding, protein sy | 99.97 | |
3bbo_D_184-271 | 88 | Ribosomal protein L1; large ribosomal subunit, spi | 99.97 | |
1mzp_A_59-152 | 94 | 50S ribosomal protein L1P; ribosome, RNA-protein c | 99.94 | |
1i2a_A_55-148 | 94 | 50S ribosomal protein L1P; primary rRNA-binding pr | 99.94 | |
2zkr_5_55-147 | 93 | 60S ribosomal protein L10A; protein-RNA complex, 6 | 99.94 | |
2noq_G_57-149 | 93 | 60S ribosomal protein L1; IRES RNA, ribosome, tran | 99.93 | |
2ov7_A_18-137 | 120 | 50S ribosomal protein L1; 2.30A {Thermus thermophi | 99.93 | |
3fik_5_72-133 | 62 | 50S ribosomal protein L1; ribosome, decoding, tRNA | 99.78 |
>2ftc_A (A:) Mitochondrial ribosomal protein L1; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} | Back alignment and structure |
---|
Probab=100.00 E-value=0 Score=394.02 Aligned_cols=185 Identities=22% Similarity=0.452 Sum_probs=178.2 Q ss_pred EEEEEEECCCCCCCCCCCEEEEEECCCCCCCC-CEEEEECH-HHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCEEEECHH Q ss_conf 99999953787645443013799527788654-06999750-44576874120000278999997517533346886446 Q gi|254780146|r 43 VEIAMNLGIDPRHANQMVRGVVTMPNGTGVNV-RVAVFATS-SKADEAREAGADIVGGEDLFEIVKGGQIDFDRCIATPD 120 (232) Q Consensus 43 vel~i~L~id~~k~~~~irg~v~LPh~~gk~~-kV~Vf~~~-~~~~~Ak~aGa~~vg~~eli~~i~~~~~~fd~~iAt~~ 120 (232) ||++++|+++++|+++++||+|.|||+++++. ||||||++ +.+++|++|||++||++|||++|++||++||+|||||+ T Consensus 1 idl~l~l~~~~kk~~~~~rg~v~LPh~~~k~~~kv~Vfa~~~~~~~~A~~aGA~~vG~~eli~kI~~g~~~~D~~ia~~~ 80 (189) T 2ftc_A 1 LDLTLDMALGKKKNVEPFTSVLSLPYPFASEINKVAVFTENASEVKIAEENGAAFAGGTSLIQKIWDDEIVADFYVAVPE 80 (189) T ss_pred CEEEEEECCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCEEECHH T ss_conf 95999917787667663678997789999843699998488256999985565201367788898726622450023177 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCC-CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 7788886433200100174223356665579999998601-110223575267875315778989999999999999986 Q gi|254780146|r 121 MMPLVGRLGRILGPRGIMPNLRVGTVTTDVATAVRESKSG-AVDFRSEKAGIIHAGIGKVSFENKKIEENVLAFVSAVVK 199 (232) Q Consensus 121 ~m~~i~klgriLGPkglMPn~k~GTv~~di~~~i~~~k~g-~i~~r~~k~g~i~~~IG~~~m~~e~i~eNi~~~~~~i~~ 199 (232) |||+|++|||+|||| |||||.||+++|+.++|+++++| +++||.++.|++|++||+++|+++||.||+.+++++|++ T Consensus 81 ~m~~l~klg~iLGpk--mP~~k~gTv~~di~~~i~~~k~g~~~~~r~~k~g~i~~~IG~~~m~~e~l~eNi~~~i~~i~~ 158 (189) T 2ftc_A 81 IMPELNRLRKKLNKK--YPKLSRNSIGRDIPKMLELFKNGHEIKVDEERENFLQTKIATLDMSSDQIAANLQAVINEVCR 158 (189) T ss_pred HHHHHHHHHHHHCCC--CCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 899899999875235--888776656754899999973694566503544168851366667889999999999999997 Q ss_pred CCCCCCCCCEEEEEEEEECCCCCEEEECHHC Q ss_conf 0866254433779999923897277400100 Q gi|254780146|r 200 AKPSVAKGDYVKRVTLSSTMGCGIKVDLSSF 230 (232) Q Consensus 200 ~kp~~~kg~~Ik~v~lssTmGp~i~id~~~~ 230 (232) ++|.+. |+||+++|||||||||++||+++| T Consensus 159 ~kp~~~-g~~i~~~~i~stmgp~~~i~~~~~ 188 (189) T 2ftc_A 159 HRPLNL-GPFVVRAFLRSSTSEGLLLKIDPL 188 (189) T ss_pred HCCCCC-CCCEEEEEEECCCCCCEEEECCCC T ss_conf 287456-872889999898999721546878 |
>2zkr_5 (5:1-54,5:148-212) 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} | Back alignment and structure |
---|
>1i2a_A (A:1-54,A:149-219) 50S ribosomal protein L1P; primary rRNA-binding protein, translational repressor, ribosome; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
---|
>2noq_G (G:1-56,G:150-213) 60S ribosomal protein L1; IRES RNA, ribosome, translation, internal initiation; 7.30A {Saccharomyces cerevisiae} PDB: 1s1i_A | Back alignment and structure |
---|
>3fik_5 (5:1-71,5:134-234) 50S ribosomal protein L1; ribosome, decoding, tRNA, EF-TU, ternary complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding; 6.70A {Escherichia coli} PDB: 2rdo_9 2gya_2 2gyc_2 | Back alignment and structure |
---|
>3bbo_D (D:1-183,D:272-352) Ribosomal protein L1; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} | Back alignment and structure |
---|
>1ad2_A (A:1-68,A:160-228) TL2, ribosomal protein L1; RNA binding, protein synthesis, mutant; 1.90A {Thermus thermophilus} | Back alignment and structure |
---|
>1mzp_A (A:1-58,A:153-217) 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A {Sulfolobus acidocaldarius} | Back alignment and structure |
---|
>1ad2_A (A:69-159) TL2, ribosomal protein L1; RNA binding, protein synthesis, mutant; 1.90A {Thermus thermophilus} | Back alignment and structure |
---|
>3bbo_D (D:184-271) Ribosomal protein L1; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} | Back alignment and structure |
---|
>1mzp_A (A:59-152) 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A {Sulfolobus acidocaldarius} | Back alignment and structure |
---|
>1i2a_A (A:55-148) 50S ribosomal protein L1P; primary rRNA-binding protein, translational repressor, ribosome; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
---|
>2zkr_5 (5:55-147) 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} | Back alignment and structure |
---|
>2noq_G (G:57-149) 60S ribosomal protein L1; IRES RNA, ribosome, translation, internal initiation; 7.30A {Saccharomyces cerevisiae} PDB: 1s1i_A | Back alignment and structure |
---|
>2ov7_A (A:18-137) 50S ribosomal protein L1; 2.30A {Thermus thermophilus} PDB: 2oum_A 2vpl_A | Back alignment and structure |
---|
>3fik_5 (5:72-133) 50S ribosomal protein L1; ribosome, decoding, tRNA, EF-TU, ternary complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding; 6.70A {Escherichia coli} PDB: 2rdo_9 2gya_2 2gyc_2 | Back alignment and structure |
---|