HHsearch alignment for GI: 254780146 and conserved domain: PRK05424

>PRK05424 rplA 50S ribosomal protein L1; Validated.
Probab=100.00  E-value=0  Score=541.23  Aligned_cols=231  Identities=60%  Similarity=0.967  Sum_probs=228.3

Q ss_pred             CCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCEEEEEC
Q ss_conf             74223437989851384768898999999986087899862999999537876454430137995277886540699975
Q gi|254780146|r    2 VSKISKRMQQISQGIDRSALYGLSDAVVMLKERATARFDETVEIAMNLGIDPRHANQMVRGVVTMPNGTGVNVRVAVFAT   81 (232)
Q Consensus         2 m~k~~Kr~~~~~~~~~~~~~ysi~eAi~~lk~~~~~kf~esvel~i~L~id~~k~~~~irg~v~LPh~~gk~~kV~Vf~~   81 (232)
T Consensus         1 m~K~~Kr~~~~~~~~~~~k~y~l~eAi~~lk~~~~~kF~esve~~i~Lnid~kk~dq~irg~v~LPhg~gk~~kV~Vfa~   80 (232)
T PRK05424          1 MAKLSKRYRAAAEKVDRTKLYSLEEAIALVKETATAKFDETVEVAVNLGVDPRKADQQVRGAVVLPHGTGKTVRVAVFAK   80 (232)
T ss_pred             CCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCCEEEEEECC
T ss_conf             99536899999861653566799999999997065799988899999767876677614579989988998638999838


Q ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf             04457687412000027899999751753334688644677888864332001001742233566655799999986011
Q gi|254780146|r   82 SSKADEAREAGADIVGGEDLFEIVKGGQIDFDRCIATPDMMPLVGRLGRILGPRGIMPNLRVGTVTTDVATAVRESKSGA  161 (232)
Q Consensus        82 ~~~~~~Ak~aGa~~vg~~eli~~i~~~~~~fd~~iAt~~~m~~i~klgriLGPkglMPn~k~GTv~~di~~~i~~~k~g~  161 (232)
T Consensus        81 ~~~~~~Ak~aGAd~vG~~dli~~Ik~g~~~fD~~iAtp~~m~~l~klgkiLGPrGLMPnpK~GTVt~di~~~I~~~k~G~  160 (232)
T PRK05424         81 GEKAEEAKAAGADIVGAEDLIEKIKKGWLDFDVVIATPDMMAVVGKLGKVLGPRGLMPNPKTGTVTPDVAKAVKEAKAGK  160 (232)
T ss_pred             CHHHHHHHHCCCCEECHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC
T ss_conf             24389999869988751878999866864477777368899999998763074567999998844627999999986893


Q ss_pred             CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCEEEECHHCCC
Q ss_conf             10223575267875315778989999999999999986086625443377999992389727740010059
Q gi|254780146|r  162 VDFRSEKAGIIHAGIGKVSFENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTMGCGIKVDLSSFSV  232 (232)
Q Consensus       162 i~~r~~k~g~i~~~IG~~~m~~e~i~eNi~~~~~~i~~~kp~~~kg~~Ik~v~lssTmGp~i~id~~~~~~  232 (232)
T Consensus       161 v~~r~dk~g~i~~~IGk~sf~~e~l~eNi~a~l~~i~~~kp~~~kg~~ik~i~lssTMGp~i~i~~~~l~~  231 (232)
T PRK05424        161 VEFRVDKAGIIHAPIGKVSFDAEKLKENLKALLDAIKKAKPATAKGTYIKKVSLSSTMGPGVKVDPASLSA  231 (232)
T ss_pred             EEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEECHHHHHC
T ss_conf             79998788859998707869989999999999999998098655776587899989999998975788513