HHsearch alignment of GI: 254780146 and MMDB domain: 2noq_G_57-149

>2noq_G (G:57-149) 60S ribosomal protein L1; IRES RNA, ribosome, translation, internal initiation; 7.30A {Saccharomyces cerevisiae} PDB: 1s1i_A
Probab=99.93  E-value=1.4e-26  Score=184.84  Aligned_cols=86  Identities=23%  Similarity=0.376  Sum_probs=79.5

Q ss_pred             CCCCCEEEEECHHHHHHHHHCCCCCCCHHHHHHH------HHCCCCCCCEEEECHHHHHHHHH-HHHHHHHHHCCCCCCC
Q ss_conf             8654069997504457687412000027899999------75175333468864467788886-4332001001742233
Q gi|254780146|r   71 GVNVRVAVFATSSKADEAREAGADIVGGEDLFEI------VKGGQIDFDRCIATPDMMPLVGR-LGRILGPRGIMPNLRV  143 (232)
Q Consensus        71 gk~~kV~Vf~~~~~~~~Ak~aGa~~vg~~eli~~------i~~~~~~fd~~iAt~~~m~~i~k-lgriLGPkglMPn~k~  143 (232)
                      .++.+|||||+++++++|+++||+++|++||++.      ++++|.+||+|||||++||+|++ |||+||||||||||++
T Consensus         1 rk~~kI~Vf~~~~~~~~A~~aGa~~vg~eeL~~~~k~~k~~kk~~~~~d~~ia~~~~m~~l~k~lg~~LGprgkmP~~k~   80 (93)
T 2noq_G            1 RPNMSICIFGDAFDVDRAKSCGVDAMSVDDLKKLNKNKKLIKKLSKKYNAFIASEVLIKQVPRLLGPQLSKAGKFPTPVS   80 (93)
T ss_dssp             SCCCCEEEEECTTHHHHHHHHTCEEEETTHHHHHHHCHHHHHHHHHHCSEEEEEGGGGTHHHHHTHHHHHHHTCCCEEEC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             87716999726512677765200224668888886201678877520688996505776777654123203553234666


Q ss_pred             CCCCCCHHHHHHHHH
Q ss_conf             566655799999986
Q gi|254780146|r  144 GTVTTDVATAVRESK  158 (232)
Q Consensus       144 GTv~~di~~~i~~~k  158 (232)
                      ||  .|+.++|+++|
T Consensus        81 gt--~di~~~i~~~k   93 (93)
T 2noq_G           81 HN--DDLYGKVTDVR   93 (93)
T ss_dssp             TT--CCCHHHHHHHC
T ss_pred             CC--CCHHHHHHHHH
T ss_conf             53--43999999985