HHsearch results for GI: 254780146 and protein with PDBid: 1mzp_A
>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A {Sulfolobus acidocaldarius} SCOP: e.24.1.1 PDB: 1pnu_5 1pny_5 1vor_7 1vou_7 1vow_7 1voy_7 1vp0_7 3e1b_Z 3e1d_Z
Probab=100.00 E-value=0 Score=395.72 Aligned_cols=198 Identities=24% Similarity=0.408 Sum_probs=186.5
Q ss_pred CHHHHHHHHHHC---CCCCCCCCEEEEEEE-CCCCCCCCCCCEEEEEECCCCCCCCCEEEEECHHHHHHHHHCCCCCCCH
Q ss_conf 989999999860---878998629999995-3787645443013799527788654069997504457687412000027
Q gi|254780146|r 23 GLSDAVVMLKER---ATARFDETVEIAMNL-GIDPRHANQMVRGVVTMPNGTGVNVRVAVFATSSKADEAREAGADIVGG 98 (232)
Q Consensus 23 si~eAi~~lk~~---~~~kf~esvel~i~L-~id~~k~~~~irg~v~LPh~~gk~~kV~Vf~~~~~~~~Ak~aGa~~vg~ 98 (232)
++.||++.+++. .++||+||||++|+| ++|++|++++|||+|.|||++|++.+|||||+++.+++|+++||++||+
T Consensus 7 ~l~~ai~~~~~~~~~~krkF~esidl~i~Lk~iD~kk~~~~irg~v~LP~~~~k~~kV~vfa~~~~~~~Ak~aGa~~Vg~ 86 (217)
T 1mzp_A 7 SLIEALKLALSTEYNVKRNFTQSVEIILTFKGIDMKKGDLKLREIVPLPKQPSKAKRVLVVPSSEQLEYAKKASPKVVIT 86 (217)
T ss_dssp HHHHHHHHHHSTTTCCCCSSCCEEEEEEEESSCCGGGTTTCCEEEEECSSCCSSCCCEEEECCHHHHHHHHHTCCSEECC
T ss_pred HHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEECCHHHHHHHHCCCCEECH
T ss_conf 99999999985053557698726999996068789877655678997889999960899990734699998729831162
Q ss_pred HHHHHHHHCCCC-------CCCEEEECHHHHHHHHH-HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 899999751753-------33468864467788886-4332001001742233566655799999986011102235752
Q gi|254780146|r 99 EDLFEIVKGGQI-------DFDRCIATPDMMPLVGR-LGRILGPRGIMPNLRVGTVTTDVATAVRESKSGAVDFRSEKAG 170 (232)
Q Consensus 99 ~eli~~i~~~~~-------~fd~~iAt~~~m~~i~k-lgriLGPkglMPn~k~GTv~~di~~~i~~~k~g~i~~r~~k~g 170 (232)
+|++++|.+++. +||+|+|++++|+.+++ |||+||||||||||+.|| .|+.++|+++++| ++||.++.|
T Consensus 87 ~eli~ki~~~~~~~~kl~~~~d~fla~~~~m~~~~~~LGkiLgprgkmP~pk~gt--~di~~~i~~~k~~-v~~r~~k~~ 163 (217)
T 1mzp_A 87 REELQKLQGQKRPVKKLARQNEWFLINQESMALAGRILGPALGPRGKFPTPLPNT--ADISEYINRFKRS-VLVKTKDQP 163 (217)
T ss_dssp HHHHHHHTTCHHHHHHHHHSCSEEEECGGGHHHHHHHTHHHHGGGTCCEEECCSS--SCCHHHHHHHHTE-EEEECSSSS
T ss_pred HHHHHHHHCCCCCCCHHCCCCCEEEECCCHHHHHHHHCCCEECCCCCCCCCCCCC--CCHHHHHHHHHCE-EEEEECCCC
T ss_conf 9999986334221000112267599717177655442233242356899864587--6479999987445-899987986
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCEEEE
Q ss_conf 67875315778989999999999999986086625443377999992389727740
Q gi|254780146|r 171 IIHAGIGKVSFENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTMGCGIKVD 226 (232)
Q Consensus 171 ~i~~~IG~~~m~~e~i~eNi~~~~~~i~~~kp~~~kg~~Ik~v~lssTmGp~i~id 226 (232)
++|++||+++|++|||.||+.+++++|.+..| ++.||+++|||||||||++||
T Consensus 164 ~i~~~VG~~~m~~eel~eNi~a~~~~i~~~~~---~~~~Ik~i~lksTmGp~i~i~ 216 (217)
T 1mzp_A 164 QVQVFIGTEDMKPEDLAENAIAVLNAIENKAK---VETNLRNIYVKTTMGKAVKVK 216 (217)
T ss_dssp EEEEEEEETTSCHHHHHHHHHHHHHHHHHHCC---CTTTEEEEEEEETTSCCEECC
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCC---CCCCEEEEEEECCCCCCEECC
T ss_conf 79998705769989999999999999874446---688666899989999897767