HHsearch results for GI: 254780146 and protein with PDBid: 2ftc_A
>2ftc_A Mitochondrial ribosomal protein L1; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus}
Probab=100.00 E-value=0 Score=398.40 Aligned_cols=185 Identities=22% Similarity=0.452 Sum_probs=178.4
Q ss_pred EEEEEEECCCCCCCCCCCEEEEEECCCCCCCC-CEEEEECH-HHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCEEEECHH
Q ss_conf 99999953787645443013799527788654-06999750-44576874120000278999997517533346886446
Q gi|254780146|r 43 VEIAMNLGIDPRHANQMVRGVVTMPNGTGVNV-RVAVFATS-SKADEAREAGADIVGGEDLFEIVKGGQIDFDRCIATPD 120 (232)
Q Consensus 43 vel~i~L~id~~k~~~~irg~v~LPh~~gk~~-kV~Vf~~~-~~~~~Ak~aGa~~vg~~eli~~i~~~~~~fd~~iAt~~ 120 (232)
||++++|++|++|++++|||+|.|||++|++. ||||||++ +.+++|++|||++||++|||++|++||++||+|||||+
T Consensus 1 vdl~l~l~~~~kk~~~~~rg~v~LPh~~~k~~~kv~Vfa~~~~~~~~A~~aGA~~vg~~eli~kI~~g~~~~D~~iat~~ 80 (189)
T 2ftc_A 1 LDLTLDMALGKKKNVEPFTSVLSLPYPFASEINKVAVFTENASEVKIAEENGAAFAGGTSLIQKIWDDEIVADFYVAVPE 80 (189)
T ss_pred CEEEEEECCCCCCCCCCEEEEEECCCCCCCCEEEEEEEECCHHHHHHHHHCCCCEECHHHHHHHHHCCCCCCCCCCCCHH
T ss_conf 95999917788767673678997789999953699999088378999987699798428799999737743463352799
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCC-CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 7788886433200100174223356665579999998601-110223575267875315778989999999999999986
Q gi|254780146|r 121 MMPLVGRLGRILGPRGIMPNLRVGTVTTDVATAVRESKSG-AVDFRSEKAGIIHAGIGKVSFENKKIEENVLAFVSAVVK 199 (232)
Q Consensus 121 ~m~~i~klgriLGPkglMPn~k~GTv~~di~~~i~~~k~g-~i~~r~~k~g~i~~~IG~~~m~~e~i~eNi~~~~~~i~~ 199 (232)
|||+|++|||+|||| |||||.||+++|+.++|+++++| +++||.++.|++|++||+++|+++||+||+.+++++|++
T Consensus 81 ~m~~l~klg~iLGpk--mPnpk~gtv~~di~~~v~~~k~g~~v~~r~~k~g~i~~~IG~~~m~~e~l~eNi~a~~~~i~~ 158 (189)
T 2ftc_A 81 IMPELNRLRKKLNKK--YPKLSRNSIGRDIPKMLELFKNGHEIKVDEERENFLQTKIATLDMSSDQIAANLQAVINEVCR 158 (189)
T ss_pred HHHHHHHHHHHHCCC--CCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 999999988764003--899999986757899999985695478602678769986677658999999999999999997
Q ss_pred CCCCCCCCCEEEEEEEEECCCCCEEEECHHC
Q ss_conf 0866254433779999923897277400100
Q gi|254780146|r 200 AKPSVAKGDYVKRVTLSSTMGCGIKVDLSSF 230 (232)
Q Consensus 200 ~kp~~~kg~~Ik~v~lssTmGp~i~id~~~~ 230 (232)
++|++. |+||+++|||||||||++||+++|
T Consensus 159 ~kp~~~-g~~I~~v~l~sTmgp~~~i~~~~~ 188 (189)
T 2ftc_A 159 HRPLNL-GPFVVRAFLRSSTSEGLLLKIDPL 188 (189)
T ss_pred HCCCCC-CCCEEEEEEECCCCCCEEEECCCC
T ss_conf 187456-871899999898999700545888