HHsearch results for GI: 254780146 and protein with PDBid: 2ftc_A

>2ftc_A Mitochondrial ribosomal protein L1; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus}
Probab=100.00  E-value=0  Score=398.40  Aligned_cols=185  Identities=22%  Similarity=0.452  Sum_probs=178.4

Q ss_pred             EEEEEEECCCCCCCCCCCEEEEEECCCCCCCC-CEEEEECH-HHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCEEEECHH
Q ss_conf             99999953787645443013799527788654-06999750-44576874120000278999997517533346886446
Q gi|254780146|r   43 VEIAMNLGIDPRHANQMVRGVVTMPNGTGVNV-RVAVFATS-SKADEAREAGADIVGGEDLFEIVKGGQIDFDRCIATPD  120 (232)
Q Consensus        43 vel~i~L~id~~k~~~~irg~v~LPh~~gk~~-kV~Vf~~~-~~~~~Ak~aGa~~vg~~eli~~i~~~~~~fd~~iAt~~  120 (232)
                      ||++++|++|++|++++|||+|.|||++|++. ||||||++ +.+++|++|||++||++|||++|++||++||+|||||+
T Consensus         1 vdl~l~l~~~~kk~~~~~rg~v~LPh~~~k~~~kv~Vfa~~~~~~~~A~~aGA~~vg~~eli~kI~~g~~~~D~~iat~~   80 (189)
T 2ftc_A            1 LDLTLDMALGKKKNVEPFTSVLSLPYPFASEINKVAVFTENASEVKIAEENGAAFAGGTSLIQKIWDDEIVADFYVAVPE   80 (189)
T ss_pred             CEEEEEECCCCCCCCCCEEEEEECCCCCCCCEEEEEEEECCHHHHHHHHHCCCCEECHHHHHHHHHCCCCCCCCCCCCHH
T ss_conf             95999917788767673678997789999953699999088378999987699798428799999737743463352799


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCC-CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             7788886433200100174223356665579999998601-110223575267875315778989999999999999986
Q gi|254780146|r  121 MMPLVGRLGRILGPRGIMPNLRVGTVTTDVATAVRESKSG-AVDFRSEKAGIIHAGIGKVSFENKKIEENVLAFVSAVVK  199 (232)
Q Consensus       121 ~m~~i~klgriLGPkglMPn~k~GTv~~di~~~i~~~k~g-~i~~r~~k~g~i~~~IG~~~m~~e~i~eNi~~~~~~i~~  199 (232)
                      |||+|++|||+||||  |||||.||+++|+.++|+++++| +++||.++.|++|++||+++|+++||+||+.+++++|++
T Consensus        81 ~m~~l~klg~iLGpk--mPnpk~gtv~~di~~~v~~~k~g~~v~~r~~k~g~i~~~IG~~~m~~e~l~eNi~a~~~~i~~  158 (189)
T 2ftc_A           81 IMPELNRLRKKLNKK--YPKLSRNSIGRDIPKMLELFKNGHEIKVDEERENFLQTKIATLDMSSDQIAANLQAVINEVCR  158 (189)
T ss_pred             HHHHHHHHHHHHCCC--CCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             999999988764003--899999986757899999985695478602678769986677658999999999999999997


Q ss_pred             CCCCCCCCCEEEEEEEEECCCCCEEEECHHC
Q ss_conf             0866254433779999923897277400100
Q gi|254780146|r  200 AKPSVAKGDYVKRVTLSSTMGCGIKVDLSSF  230 (232)
Q Consensus       200 ~kp~~~kg~~Ik~v~lssTmGp~i~id~~~~  230 (232)
                      ++|++. |+||+++|||||||||++||+++|
T Consensus       159 ~kp~~~-g~~I~~v~l~sTmgp~~~i~~~~~  188 (189)
T 2ftc_A          159 HRPLNL-GPFVVRAFLRSSTSEGLLLKIDPL  188 (189)
T ss_pred             HCCCCC-CCCEEEEEEECCCCCCEEEECCCC
T ss_conf             187456-871899999898999700545888