HHsearch results for GI: 254780146 and protein with PDBid: 2ov7_A
>2ov7_A 50S ribosomal protein L1; 2.30A {Thermus thermophilus} PDB: 2oum_A 2vpl_A
Probab=100.00 E-value=6e-40 Score=266.93 Aligned_cols=137 Identities=42% Similarity=0.752 Sum_probs=133.7
Q ss_pred CCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCEEEEECH
Q ss_conf 42234379898513847688989999999860878998629999995378764544301379952778865406999750
Q gi|254780146|r 3 SKISKRMQQISQGIDRSALYGLSDAVVMLKERATARFDETVEIAMNLGIDPRHANQMVRGVVTMPNGTGVNVRVAVFATS 82 (232)
Q Consensus 3 ~k~~Kr~~~~~~~~~~~~~ysi~eAi~~lk~~~~~kf~esvel~i~L~id~~k~~~~irg~v~LPh~~gk~~kV~Vf~~~ 82 (232)
.|+||||+++.+.+|..+.|++.||++++++.+.+|||||||++++||+||++.+|++||+|.||||
T Consensus 1 pK~sKryk~~~e~vd~~k~y~l~eAi~llK~~~~aKFdESvdv~i~LgiDPkk~dq~vRg~v~LP~g------------- 67 (137)
T 2ov7_A 1 PKHGKRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHG------------- 67 (137)
T ss_dssp ---CHHHHHHHTTSCTTCCBCHHHHHHHHHHTCCSSSCCEEEEEEEESSCTTCSSCCCEEEEECTTS-------------
T ss_pred CCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHCHHH-------------
T ss_conf 9847899999970463576699999999998243677640577777156856444012045646565-------------
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 44576874120000278999997517533346886446778888643320010017422335666557999999860111
Q gi|254780146|r 83 SKADEAREAGADIVGGEDLFEIVKGGQIDFDRCIATPDMMPLVGRLGRILGPRGIMPNLRVGTVTTDVATAVRESKSGAV 162 (232)
Q Consensus 83 ~~~~~Ak~aGa~~vg~~eli~~i~~~~~~fd~~iAt~~~m~~i~klgriLGPkglMPn~k~GTv~~di~~~i~~~k~g~i 162 (232)
|++
T Consensus 68 -----------------------------------------------------------------------------g~v 70 (137)
T 2ov7_A 68 -----------------------------------------------------------------------------GRI 70 (137)
T ss_dssp -----------------------------------------------------------------------------CEE
T ss_pred -----------------------------------------------------------------------------CCC
T ss_conf -----------------------------------------------------------------------------176
Q ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCEEEECHH
Q ss_conf 0223575267875315778989999999999999986086625443377999992389727740010
Q gi|254780146|r 163 DFRSEKAGIIHAGIGKVSFENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTMGCGIKVDLSS 229 (232)
Q Consensus 163 ~~r~~k~g~i~~~IG~~~m~~e~i~eNi~~~~~~i~~~kp~~~kg~~Ik~v~lssTmGp~i~id~~~ 229 (232)
+||+||.|+||++||+++|+++||.||+.+++++|.+.+|.+.||.||+++|||||||||++||.++
T Consensus 71 e~r~DK~g~ih~~iGk~sf~~~~l~eN~~a~~~~i~~~kP~~~KG~yik~v~lssTMgpgi~id~~S 137 (137)
T 2ov7_A 71 EFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRINPHS 137 (137)
T ss_dssp EEECCTTSEEEEEEEETTSCHHHHHHHHHHHHHHHHTTSCSSCCSCSEEEEEEEETTSCCEEBCTTC
T ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEECCCC
T ss_conf 0025788715434613127989999999999999998295424677796899988889987709999