Query gi|254780146|ref|YP_003064559.1| 50S ribosomal protein L1 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 232
No_of_seqs 118 out of 1923
Neff 6.3
Searched_HMMs 23785
Date Sun May 22 16:19:56 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780146.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wwq_5 50S ribosomal protein L 100.0 0 0 497.3 22.4 230 2-231 1-230 (234)
2 3bbo_D Ribosomal protein L1; l 100.0 0 0 503.0 12.6 230 2-231 115-344 (352)
3 1ad2_A TL2, ribosomal protein 100.0 0 0 491.2 21.7 227 3-229 1-228 (228)
4 1i2a_A 50S ribosomal protein L 100.0 0 0 404.9 20.5 205 22-231 4-217 (219)
5 1mzp_A 50S ribosomal protein L 100.0 0 0 395.7 21.0 198 23-226 7-216 (217)
6 2ftc_A Mitochondrial ribosomal 100.0 0 0 398.4 18.7 185 43-230 1-188 (189)
7 2zkr_5 60S ribosomal protein L 100.0 0 0 394.0 20.8 200 21-225 3-211 (212)
8 2noq_G 60S ribosomal protein L 100.0 0 0 347.7 19.0 198 22-225 8-213 (213)
9 2ov7_A 50S ribosomal protein L 100.0 6E-40 2.5E-44 266.9 16.5 137 3-229 1-137 (137)
10 1v5x_A PRA isomerase, phosphor 59.0 1.6 6.6E-05 22.4 -0.1 23 74-96 54-79 (203)
11 1nsj_A PRAI, phosphoribosyl an 54.7 2 8.6E-05 21.7 -0.1 18 141-158 155-173 (205)
12 3nbm_A PTS system, lactose-spe 44.7 7.1 0.0003 18.3 1.4 85 69-157 2-103 (108)
13 2d8a_A PH0655, probable L-thre 44.0 13 0.00056 16.6 2.7 64 75-138 194-263 (348)
14 1pii_A N-(5'phosphoribosyl)ant 42.7 4.7 0.0002 19.4 0.3 10 85-94 123-132 (452)
15 2ftc_G L11MT, MRP-L11, 39S rib 37.3 10 0.00044 17.3 1.3 38 110-147 64-101 (145)
16 1pqw_A Polyketide synthase; ro 31.1 24 0.00099 15.1 2.3 63 75-138 65-133 (198)
17 3h4z_A Maltose-binding peripla 28.7 20 0.00085 15.5 1.6 134 62-199 243-391 (568)
18 1k1g_A SF1-BO isoform; splicin 25.7 12 0.00049 17.0 -0.0 17 120-136 16-32 (131)
19 3gaz_A Alcohol dehydrogenase s 23.8 34 0.0014 14.1 4.7 63 74-138 176-242 (343)
20 2aze_B Transcription factor E2 23.4 29 0.0012 14.6 1.6 11 212-222 88-98 (106)
21 2eih_A Alcohol dehydrogenase; 23.1 35 0.0015 14.0 2.3 64 74-138 192-261 (343)
22 1wly_A CAAR, 2-haloacrylate re 22.9 35 0.0015 14.0 2.0 116 74-199 171-295 (333)
23 2k6g_A Replication factor C su 22.7 36 0.0015 14.0 4.1 40 69-108 66-108 (109)
24 2bl5_A MGC83862 protein, quaki 22.5 11 0.00047 17.1 -0.6 14 123-136 14-27 (140)
25 3m33_A Uncharacterized protein 21.5 14 0.00058 16.6 -0.3 28 111-138 111-138 (226)
26 1vq8_I 50S ribosomal protein L 20.8 18 0.00075 15.8 0.1 69 74-147 29-97 (162)
27 1ydh_A AT5G11950; structural g 20.2 40 0.0017 13.7 1.9 24 71-94 7-36 (216)
No 1
>2wwq_5 50S ribosomal protein L1; ribosomal protein, ribonucleoprotein, nucleotide-binding, protein biosynthesis, translation, zinc-finger; HET: 5MU; 5.80A {Escherichia coli} PDB: 3fik_5 3kcr_5 2rdo_9 2gya_2 2gyc_2
Probab=100.00 E-value=0 Score=497.26 Aligned_cols=230 Identities=50% Similarity=0.862 Sum_probs=227.3
Q ss_pred CCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCEEEEEC
Q ss_conf 74223437989851384768898999999986087899862999999537876454430137995277886540699975
Q gi|254780146|r 2 VSKISKRMQQISQGIDRSALYGLSDAVVMLKERATARFDETVEIAMNLGIDPRHANQMVRGVVTMPNGTGVNVRVAVFAT 81 (232)
Q Consensus 2 m~k~~Kr~~~~~~~~~~~~~ysi~eAi~~lk~~~~~kf~esvel~i~L~id~~k~~~~irg~v~LPh~~gk~~kV~Vf~~ 81 (232)
|+|+||||+.+.+.+|..+.|+++||++++|+.+.++|+||+|++|+|++|++|++++|||++.|||++|++.+|||||+
T Consensus 1 m~k~~kr~k~~~~~~d~~k~y~i~eAi~~lk~~~~~kF~etvel~i~L~~d~~k~~~~i~g~v~LP~~~~k~~ki~v~a~ 80 (234)
T 2wwq_5 1 MAKLTKRMRVIREKVDATKQYDINEAIALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQ 80 (234)
T ss_dssp CCCCCHHHHHHHTTSCCSSEECHHHHHHHHHHTCCCSSCCEEEEEEEECSCCCSSTTSCCEEEECSSCCSSCCCEEEECS
T ss_pred CCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCEECCEEECCCCCCCCEEEEEECC
T ss_conf 99536899998861553566699999999997177998764899999788777666302213304678986259999738
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 04457687412000027899999751753334688644677888864332001001742233566655799999986011
Q gi|254780146|r 82 SSKADEAREAGADIVGGEDLFEIVKGGQIDFDRCIATPDMMPLVGRLGRILGPRGIMPNLRVGTVTTDVATAVRESKSGA 161 (232)
Q Consensus 82 ~~~~~~Ak~aGa~~vg~~eli~~i~~~~~~fd~~iAt~~~m~~i~klgriLGPkglMPn~k~GTv~~di~~~i~~~k~g~ 161 (232)
++.+++|+++||+++|++||+++|+++|++||+|+|||++|+++++||++||||||||||+.||+++|+.++|+++++|+
T Consensus 81 ~~~~~~Ak~aGa~~vg~~dLi~~Ik~~~~~~d~~ia~~~~m~~l~klg~iLGprGlMP~pk~GTv~~d~~~~i~~~k~g~ 160 (234)
T 2wwq_5 81 GANAEAAKAAGAELVGMEDLADQIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQ 160 (234)
T ss_dssp SSCHHHHHHHTCSEECSHHHHHHHHHTCCCSSEEEECHHHHHHTTSSCSCCCSSCCSCCTTTTCBCSCSHHHHHHHHHHE
T ss_pred CHHHHHHHHCCCCEECHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCE
T ss_conf 15799998769989753776655424551026332377788888876541564568999998976704999999985786
Q ss_pred CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCEEEECHHCC
Q ss_conf 1022357526787531577898999999999999998608662544337799999238972774001005
Q gi|254780146|r 162 VDFRSEKAGIIHAGIGKVSFENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTMGCGIKVDLSSFS 231 (232)
Q Consensus 162 i~~r~~k~g~i~~~IG~~~m~~e~i~eNi~~~~~~i~~~kp~~~kg~~Ik~v~lssTmGp~i~id~~~~~ 231 (232)
++||.++.|++|++||+++|+++||.||+.+++++|.+++|.+.+|.||+++|||||||||++||+.+|+
T Consensus 161 v~~r~~k~g~i~~~IG~~~m~~e~L~eNi~a~l~~i~~~~p~~~kg~~Ik~v~lksTMGp~i~id~~~~~ 230 (234)
T 2wwq_5 161 VRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPTQAKGVYIKKVSISTTMGAGVAVDQAGLS 230 (234)
T ss_dssp EEECCSSSCEEEEEEEETTSCHHHHHHHHHHHHHHHHHSCCSSCCSCCEEEEEEEESSSCEEEESSSCCC
T ss_pred EEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEHHHHH
T ss_conf 9994167755887753456898999999999999999739653467458899998998998898868956
No 2
>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=0 Score=503.02 Aligned_cols=230 Identities=45% Similarity=0.717 Sum_probs=226.2
Q ss_pred CCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCEEEEEC
Q ss_conf 74223437989851384768898999999986087899862999999537876454430137995277886540699975
Q gi|254780146|r 2 VSKISKRMQQISQGIDRSALYGLSDAVVMLKERATARFDETVEIAMNLGIDPRHANQMVRGVVTMPNGTGVNVRVAVFAT 81 (232)
Q Consensus 2 m~k~~Kr~~~~~~~~~~~~~ysi~eAi~~lk~~~~~kf~esvel~i~L~id~~k~~~~irg~v~LPh~~gk~~kV~Vf~~ 81 (232)
+++.+|||+++.+.+|..+.|++.|||+++|+.+.+||+||||++|+||+|++|++|+|||+|.||||+|++.||||||+
T Consensus 115 ~~~r~kr~~~~~~~~~~~k~y~i~eAi~llK~~~~~KF~ETVEl~V~LniD~kk~dq~iRgtV~LPhg~GK~~KV~Vfad 194 (352)
T 3bbo_D 115 DRTRSKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKTVKIAVLAQ 194 (352)
T ss_dssp -CCCCCSSTTTTTSCCSSSCCCTTTTHHHHSTTCCSSSCCEECCEEEECSCTTSSTTCCEEEECCTTTSSSSSCEEEECC
T ss_pred CCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCEEEEEECC
T ss_conf 45407899999852465776699999999987176786750899998588887777604789989998999428999827
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 04457687412000027899999751753334688644677888864332001001742233566655799999986011
Q gi|254780146|r 82 SSKADEAREAGADIVGGEDLFEIVKGGQIDFDRCIATPDMMPLVGRLGRILGPRGIMPNLRVGTVTTDVATAVRESKSGA 161 (232)
Q Consensus 82 ~~~~~~Ak~aGa~~vg~~eli~~i~~~~~~fd~~iAt~~~m~~i~klgriLGPkglMPn~k~GTv~~di~~~i~~~k~g~ 161 (232)
++.+++|++|||++||++||+++|+++|++||+|+|||+||+.+++|||+||||||||||+.||+++|+.++|+++++|+
T Consensus 195 ge~a~eAK~AGAd~VG~eeLikkIk~g~~~fD~~IAtpdmM~~v~kLGkILGPRGLMPnPK~GTVt~Di~~aI~~~K~G~ 274 (352)
T 3bbo_D 195 GDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMAKVASLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGK 274 (352)
T ss_dssp TTTTHHHHTTTCSEEECTTTHHHHTTTCCCCSEEEECSSSHHHHGGGGGTTTTTTCSCCTTTTCBSSCHHHHHTTTTTCC
T ss_pred CHHHHHHHHCCCCEECCHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC
T ss_conf 04389998669978552667788754773012210348889886778765032456678898887753899999997793
Q ss_pred CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCEEEECHHCC
Q ss_conf 1022357526787531577898999999999999998608662544337799999238972774001005
Q gi|254780146|r 162 VDFRSEKAGIIHAGIGKVSFENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTMGCGIKVDLSSFS 231 (232)
Q Consensus 162 i~~r~~k~g~i~~~IG~~~m~~e~i~eNi~~~~~~i~~~kp~~~kg~~Ik~v~lssTmGp~i~id~~~~~ 231 (232)
++||.|+.|+||++||+++|+++||.|||.+++++|.+++|.+.+|.||+++|||||||||++||+++|.
T Consensus 275 Ve~R~dK~g~Ihv~VGk~sm~~eqL~ENI~avi~~I~~~kP~g~Kg~~IKsv~LkSTMGP~vrId~~~~~ 344 (352)
T 3bbo_D 275 VEFRVDKTGIVHIPFGKLNFEEEDLLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREML 344 (352)
T ss_dssp EEEECCSSCEECCCCEETTSCHHHHHHHHHHHHHHHHTTCCTTCCSCSEEEEECCBSSSCCCEECTTC--
T ss_pred EEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEHHHCC
T ss_conf 8998568877998860888999999999999999999749665688568799998999998998846605
No 3
>1ad2_A TL2, ribosomal protein L1; RNA binding, protein synthesis, mutant; 1.90A {Thermus thermophilus} SCOP: e.24.1.1 PDB: 1vsa_A 1eg0_N 1vsp_A 2hgj_C 2hgq_C 2hgu_C 1zho_A 1ml5_c* 1yl3_C 1giy_C 2hw8_A 2j01_C 2j03_C 2jl6_C 2jl8_C 2om7_K* 2v47_C 2wdi_C 2wdj_C 2wdl_C ...
Probab=100.00 E-value=0 Score=491.16 Aligned_cols=227 Identities=44% Similarity=0.780 Sum_probs=222.7
Q ss_pred CCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCEEEEECH
Q ss_conf 42234379898513847688989999999860878998629999995378764544301379952778865406999750
Q gi|254780146|r 3 SKISKRMQQISQGIDRSALYGLSDAVVMLKERATARFDETVEIAMNLGIDPRHANQMVRGVVTMPNGTGVNVRVAVFATS 82 (232)
Q Consensus 3 ~k~~Kr~~~~~~~~~~~~~ysi~eAi~~lk~~~~~kf~esvel~i~L~id~~k~~~~irg~v~LPh~~gk~~kV~Vf~~~ 82 (232)
.|+||||+++.+.+|+.+.|+++||+++||+++.++|+||||++++|++|++|+++++||+|.|||++|++.+|||||++
T Consensus 1 ~k~skr~~~~~~~~~~~k~ysi~eAi~~lk~~~~~kF~esvel~i~L~~d~~k~~~~irg~v~LP~~~~k~~ki~v~a~~ 80 (228)
T 1ad2_A 1 PKHGKRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKG 80 (228)
T ss_dssp ----CCCTTTTTSCCTTCCBCHHHHHHHHHTTCCSSSCCEEEEEEEESSCTTCGGGCCEEEEECSSSCSTTSCEEEECCT
T ss_pred CCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCEEECCCCCCCCCEEEEECCH
T ss_conf 97248899988505756766999999999971889998638999996877777673101125379999975557871786
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCEEEECHHHHHHHHH-HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 445768741200002789999975175333468864467788886-4332001001742233566655799999986011
Q gi|254780146|r 83 SKADEAREAGADIVGGEDLFEIVKGGQIDFDRCIATPDMMPLVGR-LGRILGPRGIMPNLRVGTVTTDVATAVRESKSGA 161 (232)
Q Consensus 83 ~~~~~Ak~aGa~~vg~~eli~~i~~~~~~fd~~iAt~~~m~~i~k-lgriLGPkglMPn~k~GTv~~di~~~i~~~k~g~ 161 (232)
+.+++|+++||++||++|++++|+++|.+||+|||||+||++|++ |||+||||||||||+.||+++|+.++|+++++|+
T Consensus 81 ~~~~~Ak~aGa~~vg~~eli~~i~~~~~~fd~~ia~~~~m~~l~~~lgriLGPrGlMP~pk~Gtv~~di~~~v~~~k~g~ 160 (228)
T 1ad2_A 81 EKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGR 160 (228)
T ss_dssp HHHHHHHHTTCSEEECGGGHHHHHTTCCCCSEEEECGGGHHHHHHHHHHHHHHHTCSCCTTTTCBCSCHHHHHHHHHTTE
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCE
T ss_conf 78999987687203808799999758864373562478899999865132377678998877877736999999986877
Q ss_pred CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCEEEECHH
Q ss_conf 10223575267875315778989999999999999986086625443377999992389727740010
Q gi|254780146|r 162 VDFRSEKAGIIHAGIGKVSFENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTMGCGIKVDLSS 229 (232)
Q Consensus 162 i~~r~~k~g~i~~~IG~~~m~~e~i~eNi~~~~~~i~~~kp~~~kg~~Ik~v~lssTmGp~i~id~~~ 229 (232)
++||+|+.|++|++||+++|+++||.||+.+++++|++++|.+.+|+||+++|||||||||++||.++
T Consensus 161 v~~r~~k~g~i~~~VG~~~m~~e~i~eNi~a~i~~i~~~~p~~~k~~~I~~v~l~sTmGp~v~id~~s 228 (228)
T 1ad2_A 161 IEFRNDKTGAIHAPVGKACFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRINPHS 228 (228)
T ss_dssp EEEECCTTSEEEEEEEETTSCHHHHHHHHHHHHHHHHTTCCTTCCSCSEEEEEEECTTSCCEEECTTC
T ss_pred EEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEECCCC
T ss_conf 99864787647300120258999999999999999998495545787486999989989898829999
No 4
>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein, translational repressor, ribosome; 1.85A {Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB: 1cjs_A 1u63_A 1dwu_A
Probab=100.00 E-value=0 Score=404.93 Aligned_cols=205 Identities=28% Similarity=0.404 Sum_probs=190.3
Q ss_pred CCHHHHHHHHHHCCC-CCCCCCEEEEEEE-CCCCCCCCCCCEEEEEECCCCCCCCCEEEEECHHHHHHHHHCCCCCCCHH
Q ss_conf 898999999986087-8998629999995-37876454430137995277886540699975044576874120000278
Q gi|254780146|r 22 YGLSDAVVMLKERAT-ARFDETVEIAMNL-GIDPRHANQMVRGVVTMPNGTGVNVRVAVFATSSKADEAREAGADIVGGE 99 (232)
Q Consensus 22 ysi~eAi~~lk~~~~-~kf~esvel~i~L-~id~~k~~~~irg~v~LPh~~gk~~kV~Vf~~~~~~~~Ak~aGa~~vg~~ 99 (232)
+++.||++.+++.++ ++|+||||++++| ++|++|++++|||+|.|||++|++.+|||||+++.+++|++|||++||++
T Consensus 4 ~~i~~ai~~~~~~~k~rkF~esvel~v~L~~id~~k~~~~irg~v~LPh~~gk~~kV~Vfa~~e~~~~Ak~aGa~~vg~~ 83 (219)
T 1i2a_A 4 EALLQAVKEARELAKPRNFTQSFEFIATLKEIDMRKPENRIKTEVVLPHGRGKEAKIAVIGTGDLAKQAEELGLTVIRKE 83 (219)
T ss_dssp HHHHHHHHHHHHHSCCCSSCCEEEEEEEESSCCTTSGGGCCEEEEECTTCCSSCCCEEEECCHHHHHHHHHTTCEEECHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEECHHHHHHHHHCCCCCCCCH
T ss_conf 99999999999867655887449999945777888766545899988999999647999927034789986366413806
Q ss_pred HHHH------HHHCCCCCCCEEEECHHHHHHHHH-HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEE
Q ss_conf 9999------975175333468864467788886-433200100174223356665579999998601110223575267
Q gi|254780146|r 100 DLFE------IVKGGQIDFDRCIATPDMMPLVGR-LGRILGPRGIMPNLRVGTVTTDVATAVRESKSGAVDFRSEKAGII 172 (232)
Q Consensus 100 eli~------~i~~~~~~fd~~iAt~~~m~~i~k-lgriLGPkglMPn~k~GTv~~di~~~i~~~k~g~i~~r~~k~g~i 172 (232)
|+++ +++++|.+||+|||||+|||+|++ |||+||||||||||++|| .|+.++|+++++| +.|+.++.|++
T Consensus 84 el~~~~~~~~~ikk~~~~fd~~iA~~~~m~~l~k~lgkiLGpkglmP~p~~~t--~di~~~i~~~k~~-~~~~~~~~~~i 160 (219)
T 1i2a_A 84 EIEELGKNKRKLRKIAKAHDFFIAQADLMPLIGRYMGVILGPRGKMPKPVPAN--ANIKPLVERLKKT-VVINTRDKPYF 160 (219)
T ss_dssp HHHHHHHCHHHHHHHHHHCSEEEEEGGGHHHHHHHTHHHHGGGTCCCEEECTT--CCCHHHHHHHHTE-EEEECTTSSEE
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCC--CHHHHHHHHHHCC-EEEEECCCCEE
T ss_conf 78888877776630244477899755188776565066001157888788762--0488999997445-67550588368
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCEEEECHHCC
Q ss_conf 87531577898999999999999998608662544337799999238972774001005
Q gi|254780146|r 173 HAGIGKVSFENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTMGCGIKVDLSSFS 231 (232)
Q Consensus 173 ~~~IG~~~m~~e~i~eNi~~~~~~i~~~kp~~~kg~~Ik~v~lssTmGp~i~id~~~~~ 231 (232)
|++||+++|++|||.||+.+++++|.+.+|.+. .||+++|||||||||++||++.+.
T Consensus 161 ~~~IG~~sm~~e~I~eNi~a~~~~i~~~~pkg~--~~Ik~v~lssTmGp~i~i~~~~~~ 217 (219)
T 1i2a_A 161 QVLVGNEKMTDEQIVDNIEAVLNVVAKKYEKGL--YHIKDAYVKLTMGPAVKVKKEKAK 217 (219)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHHHSTTGG--GGEEEEEEEETTSCCEECC-----
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCC--EEEEEEEEECCCCCCEEEECHHHC
T ss_conf 873211468989999999999999986474786--038899998999999897336633
No 5
>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A {Sulfolobus acidocaldarius} SCOP: e.24.1.1 PDB: 1pnu_5 1pny_5 1vor_7 1vou_7 1vow_7 1voy_7 1vp0_7 3e1b_Z 3e1d_Z
Probab=100.00 E-value=0 Score=395.72 Aligned_cols=198 Identities=24% Similarity=0.408 Sum_probs=186.5
Q ss_pred CHHHHHHHHHHC---CCCCCCCCEEEEEEE-CCCCCCCCCCCEEEEEECCCCCCCCCEEEEECHHHHHHHHHCCCCCCCH
Q ss_conf 989999999860---878998629999995-3787645443013799527788654069997504457687412000027
Q gi|254780146|r 23 GLSDAVVMLKER---ATARFDETVEIAMNL-GIDPRHANQMVRGVVTMPNGTGVNVRVAVFATSSKADEAREAGADIVGG 98 (232)
Q Consensus 23 si~eAi~~lk~~---~~~kf~esvel~i~L-~id~~k~~~~irg~v~LPh~~gk~~kV~Vf~~~~~~~~Ak~aGa~~vg~ 98 (232)
++.||++.+++. .++||+||||++|+| ++|++|++++|||+|.|||++|++.+|||||+++.+++|+++||++||+
T Consensus 7 ~l~~ai~~~~~~~~~~krkF~esidl~i~Lk~iD~kk~~~~irg~v~LP~~~~k~~kV~vfa~~~~~~~Ak~aGa~~Vg~ 86 (217)
T 1mzp_A 7 SLIEALKLALSTEYNVKRNFTQSVEIILTFKGIDMKKGDLKLREIVPLPKQPSKAKRVLVVPSSEQLEYAKKASPKVVIT 86 (217)
T ss_dssp HHHHHHHHHHSTTTCCCCSSCCEEEEEEEESSCCGGGTTTCCEEEEECSSCCSSCCCEEEECCHHHHHHHHHTCCSEECC
T ss_pred HHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEECCHHHHHHHHCCCCEECH
T ss_conf 99999999985053557698726999996068789877655678997889999960899990734699998729831162
Q ss_pred HHHHHHHHCCCC-------CCCEEEECHHHHHHHHH-HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 899999751753-------33468864467788886-4332001001742233566655799999986011102235752
Q gi|254780146|r 99 EDLFEIVKGGQI-------DFDRCIATPDMMPLVGR-LGRILGPRGIMPNLRVGTVTTDVATAVRESKSGAVDFRSEKAG 170 (232)
Q Consensus 99 ~eli~~i~~~~~-------~fd~~iAt~~~m~~i~k-lgriLGPkglMPn~k~GTv~~di~~~i~~~k~g~i~~r~~k~g 170 (232)
+|++++|.+++. +||+|+|++++|+.+++ |||+||||||||||+.|| .|+.++|+++++| ++||.++.|
T Consensus 87 ~eli~ki~~~~~~~~kl~~~~d~fla~~~~m~~~~~~LGkiLgprgkmP~pk~gt--~di~~~i~~~k~~-v~~r~~k~~ 163 (217)
T 1mzp_A 87 REELQKLQGQKRPVKKLARQNEWFLINQESMALAGRILGPALGPRGKFPTPLPNT--ADISEYINRFKRS-VLVKTKDQP 163 (217)
T ss_dssp HHHHHHHTTCHHHHHHHHHSCSEEEECGGGHHHHHHHTHHHHGGGTCCEEECCSS--SCCHHHHHHHHTE-EEEECSSSS
T ss_pred HHHHHHHHCCCCCCCHHCCCCCEEEECCCHHHHHHHHCCCEECCCCCCCCCCCCC--CCHHHHHHHHHCE-EEEEECCCC
T ss_conf 9999986334221000112267599717177655442233242356899864587--6479999987445-899987986
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCEEEE
Q ss_conf 67875315778989999999999999986086625443377999992389727740
Q gi|254780146|r 171 IIHAGIGKVSFENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTMGCGIKVD 226 (232)
Q Consensus 171 ~i~~~IG~~~m~~e~i~eNi~~~~~~i~~~kp~~~kg~~Ik~v~lssTmGp~i~id 226 (232)
++|++||+++|++|||.||+.+++++|.+..| ++.||+++|||||||||++||
T Consensus 164 ~i~~~VG~~~m~~eel~eNi~a~~~~i~~~~~---~~~~Ik~i~lksTmGp~i~i~ 216 (217)
T 1mzp_A 164 QVQVFIGTEDMKPEDLAENAIAVLNAIENKAK---VETNLRNIYVKTTMGKAVKVK 216 (217)
T ss_dssp EEEEEEEETTSCHHHHHHHHHHHHHHHHHHCC---CTTTEEEEEEEETTSCCEECC
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCC---CCCCEEEEEEECCCCCCEECC
T ss_conf 79998705769989999999999999874446---688666899989999897767
No 6
>2ftc_A Mitochondrial ribosomal protein L1; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus}
Probab=100.00 E-value=0 Score=398.40 Aligned_cols=185 Identities=22% Similarity=0.452 Sum_probs=178.4
Q ss_pred EEEEEEECCCCCCCCCCCEEEEEECCCCCCCC-CEEEEECH-HHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCEEEECHH
Q ss_conf 99999953787645443013799527788654-06999750-44576874120000278999997517533346886446
Q gi|254780146|r 43 VEIAMNLGIDPRHANQMVRGVVTMPNGTGVNV-RVAVFATS-SKADEAREAGADIVGGEDLFEIVKGGQIDFDRCIATPD 120 (232)
Q Consensus 43 vel~i~L~id~~k~~~~irg~v~LPh~~gk~~-kV~Vf~~~-~~~~~Ak~aGa~~vg~~eli~~i~~~~~~fd~~iAt~~ 120 (232)
||++++|++|++|++++|||+|.|||++|++. ||||||++ +.+++|++|||++||++|||++|++||++||+|||||+
T Consensus 1 vdl~l~l~~~~kk~~~~~rg~v~LPh~~~k~~~kv~Vfa~~~~~~~~A~~aGA~~vg~~eli~kI~~g~~~~D~~iat~~ 80 (189)
T 2ftc_A 1 LDLTLDMALGKKKNVEPFTSVLSLPYPFASEINKVAVFTENASEVKIAEENGAAFAGGTSLIQKIWDDEIVADFYVAVPE 80 (189)
T ss_pred CEEEEEECCCCCCCCCCEEEEEECCCCCCCCEEEEEEEECCHHHHHHHHHCCCCEECHHHHHHHHHCCCCCCCCCCCCHH
T ss_conf 95999917788767673678997789999953699999088378999987699798428799999737743463352799
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCC-CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 7788886433200100174223356665579999998601-110223575267875315778989999999999999986
Q gi|254780146|r 121 MMPLVGRLGRILGPRGIMPNLRVGTVTTDVATAVRESKSG-AVDFRSEKAGIIHAGIGKVSFENKKIEENVLAFVSAVVK 199 (232)
Q Consensus 121 ~m~~i~klgriLGPkglMPn~k~GTv~~di~~~i~~~k~g-~i~~r~~k~g~i~~~IG~~~m~~e~i~eNi~~~~~~i~~ 199 (232)
|||+|++|||+|||| |||||.||+++|+.++|+++++| +++||.++.|++|++||+++|+++||+||+.+++++|++
T Consensus 81 ~m~~l~klg~iLGpk--mPnpk~gtv~~di~~~v~~~k~g~~v~~r~~k~g~i~~~IG~~~m~~e~l~eNi~a~~~~i~~ 158 (189)
T 2ftc_A 81 IMPELNRLRKKLNKK--YPKLSRNSIGRDIPKMLELFKNGHEIKVDEERENFLQTKIATLDMSSDQIAANLQAVINEVCR 158 (189)
T ss_pred HHHHHHHHHHHHCCC--CCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 999999988764003--899999986757899999985695478602678769986677658999999999999999997
Q ss_pred CCCCCCCCCEEEEEEEEECCCCCEEEECHHC
Q ss_conf 0866254433779999923897277400100
Q gi|254780146|r 200 AKPSVAKGDYVKRVTLSSTMGCGIKVDLSSF 230 (232)
Q Consensus 200 ~kp~~~kg~~Ik~v~lssTmGp~i~id~~~~ 230 (232)
++|++. |+||+++|||||||||++||+++|
T Consensus 159 ~kp~~~-g~~I~~v~l~sTmgp~~~i~~~~~ 188 (189)
T 2ftc_A 159 HRPLNL-GPFVVRAFLRSSTSEGLLLKIDPL 188 (189)
T ss_pred HCCCCC-CCCEEEEEEECCCCCCEEEECCCC
T ss_conf 187456-871899999898999700545888
No 7
>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=0 Score=394.02 Aligned_cols=200 Identities=29% Similarity=0.430 Sum_probs=185.8
Q ss_pred CCCHHHHHH-HHHHCCCCCCCCCEEEEEEE-CCCCCCCCCCCEEEEEECCCCCCCCCEEEEECHHHHHHHHHCCCCCCCH
Q ss_conf 889899999-99860878998629999995-3787645443013799527788654069997504457687412000027
Q gi|254780146|r 21 LYGLSDAVV-MLKERATARFDETVEIAMNL-GIDPRHANQMVRGVVTMPNGTGVNVRVAVFATSSKADEAREAGADIVGG 98 (232)
Q Consensus 21 ~ysi~eAi~-~lk~~~~~kf~esvel~i~L-~id~~k~~~~irg~v~LPh~~gk~~kV~Vf~~~~~~~~Ak~aGa~~vg~ 98 (232)
-++++|||+ .+++.+.+||+||||++|+| ++|++|++++|||+|.|||++|++.+|||||+++.+++|+++||+++|+
T Consensus 3 ~~~i~~ai~~~l~~~~~~kF~etvel~v~Lk~id~~k~~~~irg~i~LPh~~gk~~kV~Vfa~~~~~~~Ak~aga~~vg~ 82 (212)
T 2zkr_5 3 DQEIENAVSRALEDAPERNFRETVDLAVNLRDLDLNDPSNRVDESVVLPAGTGQETTIVVFAEGETALRAEEVADDVLDE 82 (212)
T ss_dssp CTTHHHHHHHHHHTSCCCSSCCEEEEEEEESSCCTTTTTTCCCCEEECSSCCSSCCCEEEECCHHHHHHHHHHTSCCCCH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHCCCCCCH
T ss_conf 78899999999985753589734999997358898763644678998899999950899985857799998712343458
Q ss_pred HHHHHH------HHCCCCCCCEEEECHHHHHHHHH-HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCE
Q ss_conf 899999------75175333468864467788886-43320010017422335666557999999860111022357526
Q gi|254780146|r 99 EDLFEI------VKGGQIDFDRCIATPDMMPLVGR-LGRILGPRGIMPNLRVGTVTTDVATAVRESKSGAVDFRSEKAGI 171 (232)
Q Consensus 99 ~eli~~------i~~~~~~fd~~iAt~~~m~~i~k-lgriLGPkglMPn~k~GTv~~di~~~i~~~k~g~i~~r~~k~g~ 171 (232)
+||++. ++++|.+||+|||+|+|||.+++ |||+||||||||||+. +++|+.++|+++++ +++||.++.|+
T Consensus 83 ~~l~~~~~~~~~~k~~~~~~D~~ia~~~~m~~l~k~lGkiLgprglMP~p~t--~t~di~~~i~~~~~-~v~~r~~k~~~ 159 (212)
T 2zkr_5 83 DELEELGGDDDAAKDLADDTDFFIAEKGLMQDIGRYLGTVLGPRGKMPEPLD--PDDDVVEVIERMKN-TVQLRSGERRT 159 (212)
T ss_dssp HHHHHHTTCHHHHHHHHHHCSEEEECTTTHHHHHHHTHHHHHHHTCCEEECC--SSSCCHHHHHHHHT-EEECCCSSSSE
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHCCCCCCEECCCCCCCCCCC--CCCHHHHHHHHHCC-EEEEEECCCCE
T ss_conf 9999875046666542146787995278865410013764001478787767--76316788776346-07998668776
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCEEE
Q ss_conf 787531577898999999999999998608662544337799999238972774
Q gi|254780146|r 172 IHAGIGKVSFENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTMGCGIKV 225 (232)
Q Consensus 172 i~~~IG~~~m~~e~i~eNi~~~~~~i~~~kp~~~kg~~Ik~v~lssTmGp~i~i 225 (232)
+|++||+++|+++||.||+.+++++|.+..|.+ ..+|+++|||||||||++|
T Consensus 160 i~~~VG~~~m~~e~i~eNi~a~i~~l~~~~~kg--~~~Ik~v~lksTmGp~v~i 211 (212)
T 2zkr_5 160 FHTRVGAEDMSAENIADNIDVILRRLHADLEKG--PLNIDTVYVKTTMGPAMEV 211 (212)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHHHHHHTTTCCC--TTTEEEEEEEESSSCCEEC
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCC--CCCEEEEEEECCCCCCEEC
T ss_conf 974423874899999999999999600100168--7325579998999978868
No 8
>2noq_G 60S ribosomal protein L1; IRES RNA, ribosome, translation, internal initiation; 7.30A {Saccharomyces cerevisiae} PDB: 3jyw_A 1s1i_A
Probab=100.00 E-value=0 Score=347.72 Aligned_cols=198 Identities=23% Similarity=0.367 Sum_probs=182.9
Q ss_pred CCHHHHHHHHHHCCCCCCCCCEEEEEEEC-CCCCCCCCCCEEEEEECCCCCCCCCEEEEECHHHHHHHHHCCCCCCCHHH
Q ss_conf 89899999998608789986299999953-78764544301379952778865406999750445768741200002789
Q gi|254780146|r 22 YGLSDAVVMLKERATARFDETVEIAMNLG-IDPRHANQMVRGVVTMPNGTGVNVRVAVFATSSKADEAREAGADIVGGED 100 (232)
Q Consensus 22 ysi~eAi~~lk~~~~~kf~esvel~i~L~-id~~k~~~~irg~v~LPh~~gk~~kV~Vf~~~~~~~~Ak~aGa~~vg~~e 100 (232)
+.++||++.+++.+.++|+||||++|+|+ +|+++ ++++||+|.|||+.+++.+|||||+++.+++|+++||+++|++|
T Consensus 8 ~ai~~~l~~~~~~~k~kf~Etvel~v~lk~~d~~k-~~~i~~~i~LPh~~~k~~~v~vf~~~~~~~~ak~~g~~~ig~~~ 86 (213)
T 2noq_G 8 EHVKELLKYSNETKKRNFLETVELQVGLKNYDPQR-DKRFSGSLKLPNCPRPNMSICIFGDAFDVDRAKSCGVDAMSVDD 86 (213)
T ss_dssp HHHHHHHHHCCSSSSCSSCCEEEEEEEECSCCTTS-TTCCEEEEECTTCCSCCCCEEEEECTTHHHHHHHHTCEEEETTH
T ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCC-CCCCCEEEECCCCCCCCEEEEEECCCHHHHHHHHCCCCCCCHHH
T ss_conf 99999999876546468985289999956889865-66043489799988887079998371669998752424447999
Q ss_pred HHHHHHCCC------CCCCEEEECHHHHHHHHH-HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEE
Q ss_conf 999975175------333468864467788886-4332001001742233566655799999986011102235752678
Q gi|254780146|r 101 LFEIVKGGQ------IDFDRCIATPDMMPLVGR-LGRILGPRGIMPNLRVGTVTTDVATAVRESKSGAVDFRSEKAGIIH 173 (232)
Q Consensus 101 li~~i~~~~------~~fd~~iAt~~~m~~i~k-lgriLGPkglMPn~k~GTv~~di~~~i~~~k~g~i~~r~~k~g~i~ 173 (232)
|++.+++.+ .+||+|+|++++|+++++ ||++|||||+||+|+. +++|+.+.|+++++ ++.||.++.+++|
T Consensus 87 l~~~~k~~~~~rkl~~~~D~fla~~~~~~~l~~~LGk~l~~kgkmP~pv~--~~~~~~~~i~~~~~-~v~~r~~k~~~~~ 163 (213)
T 2noq_G 87 LKKLNKNKKLIKKLSKKYNAFIASEVLIKQVPRLLGPQLSKAGKFPTPVS--HNDDLYGKVTDVRS-TIKFQLKKVLCLA 163 (213)
T ss_dssp HHHHHHCHHHHHHHHHHCSEEEEEGGGGTHHHHHTHHHHHHHTCCCEEEC--TTCCCHHHHHHHCC-EEEEECTTSSEEE
T ss_pred HHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHCCCCCCCCCCC--CCCCHHHHHHHHHC-CEEEECCCCCEEE
T ss_conf 99987668899877604899987889999887765245223788787868--64559999999867-7389608986799
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCEEE
Q ss_conf 7531577898999999999999998608662544337799999238972774
Q gi|254780146|r 174 AGIGKVSFENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTMGCGIKV 225 (232)
Q Consensus 174 ~~IG~~~m~~e~i~eNi~~~~~~i~~~kp~~~kg~~Ik~v~lssTmGp~i~i 225 (232)
++||+++|+++||.||+.++++.|.+..|. ++.||+++||||||||+++|
T Consensus 164 v~VG~~~m~~eel~eNi~a~~~~l~~~lp~--~~~~Iksv~lksTmgp~~~~ 213 (213)
T 2noq_G 164 VAVGNVEMEEDVLVNQILMSVNFFVSLLKK--NWQNVGSLVVKSSMGPAFRL 213 (213)
T ss_dssp EEEEESSSCHHHHHHHHHHHHHHHHHHSSS--GGGGEEEEEEEESSSCCEEC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCC--CCCCEEEEEEECCCCCCCCC
T ss_conf 975267899999999999999999873655--66647689998998977039
No 9
>2ov7_A 50S ribosomal protein L1; 2.30A {Thermus thermophilus} PDB: 2oum_A 2vpl_A
Probab=100.00 E-value=6e-40 Score=266.93 Aligned_cols=137 Identities=42% Similarity=0.752 Sum_probs=133.7
Q ss_pred CCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCEEEEECH
Q ss_conf 42234379898513847688989999999860878998629999995378764544301379952778865406999750
Q gi|254780146|r 3 SKISKRMQQISQGIDRSALYGLSDAVVMLKERATARFDETVEIAMNLGIDPRHANQMVRGVVTMPNGTGVNVRVAVFATS 82 (232)
Q Consensus 3 ~k~~Kr~~~~~~~~~~~~~ysi~eAi~~lk~~~~~kf~esvel~i~L~id~~k~~~~irg~v~LPh~~gk~~kV~Vf~~~ 82 (232)
.|+||||+++.+.+|..+.|++.||++++++.+.+|||||||++++||+||++.+|++||+|.||||
T Consensus 1 pK~sKryk~~~e~vd~~k~y~l~eAi~llK~~~~aKFdESvdv~i~LgiDPkk~dq~vRg~v~LP~g------------- 67 (137)
T 2ov7_A 1 PKHGKRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHG------------- 67 (137)
T ss_dssp ---CHHHHHHHTTSCTTCCBCHHHHHHHHHHTCCSSSCCEEEEEEEESSCTTCSSCCCEEEEECTTS-------------
T ss_pred CCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHCHHH-------------
T ss_conf 9847899999970463576699999999998243677640577777156856444012045646565-------------
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 44576874120000278999997517533346886446778888643320010017422335666557999999860111
Q gi|254780146|r 83 SKADEAREAGADIVGGEDLFEIVKGGQIDFDRCIATPDMMPLVGRLGRILGPRGIMPNLRVGTVTTDVATAVRESKSGAV 162 (232)
Q Consensus 83 ~~~~~Ak~aGa~~vg~~eli~~i~~~~~~fd~~iAt~~~m~~i~klgriLGPkglMPn~k~GTv~~di~~~i~~~k~g~i 162 (232)
|++
T Consensus 68 -----------------------------------------------------------------------------g~v 70 (137)
T 2ov7_A 68 -----------------------------------------------------------------------------GRI 70 (137)
T ss_dssp -----------------------------------------------------------------------------CEE
T ss_pred -----------------------------------------------------------------------------CCC
T ss_conf -----------------------------------------------------------------------------176
Q ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCEEEECHH
Q ss_conf 0223575267875315778989999999999999986086625443377999992389727740010
Q gi|254780146|r 163 DFRSEKAGIIHAGIGKVSFENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTMGCGIKVDLSS 229 (232)
Q Consensus 163 ~~r~~k~g~i~~~IG~~~m~~e~i~eNi~~~~~~i~~~kp~~~kg~~Ik~v~lssTmGp~i~id~~~ 229 (232)
+||+||.|+||++||+++|+++||.||+.+++++|.+.+|.+.||.||+++|||||||||++||.++
T Consensus 71 e~r~DK~g~ih~~iGk~sf~~~~l~eN~~a~~~~i~~~kP~~~KG~yik~v~lssTMgpgi~id~~S 137 (137)
T 2ov7_A 71 EFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRINPHS 137 (137)
T ss_dssp EEECCTTSEEEEEEEETTSCHHHHHHHHHHHHHHHHTTSCSSCCSCSEEEEEEEETTSCCEEBCTTC
T ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEECCCC
T ss_conf 0025788715434613127989999999999999998295424677796899988889987709999
No 10
>1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4
Probab=58.98 E-value=1.6 Score=22.40 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=11.7
Q ss_pred CCEEEEECHH---HHHHHHHCCCCCC
Q ss_conf 4069997504---4576874120000
Q gi|254780146|r 74 VRVAVFATSS---KADEAREAGADIV 96 (232)
Q Consensus 74 ~kV~Vf~~~~---~~~~Ak~aGa~~v 96 (232)
.+|+||.+.+ ..+.+.+.+.+++
T Consensus 54 ~~V~Vf~~~~~~~i~~~~~~~~~d~v 79 (203)
T 1v5x_A 54 VRVGVFRDQPPEEVLRLMEEARLQVA 79 (203)
T ss_dssp EEEEEESSCCHHHHHHHHHHTTCSEE
T ss_pred EEEEEECCCCHHHHHHHHHHCCCCEE
T ss_conf 39999776508999999871598654
No 11
>1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A
Probab=54.74 E-value=2 Score=21.69 Aligned_cols=18 Identities=17% Similarity=0.335 Sum_probs=11.2
Q ss_pred CCCCCCCC-CHHHHHHHHH
Q ss_conf 23356665-5799999986
Q gi|254780146|r 141 LRVGTVTT-DVATAVRESK 158 (232)
Q Consensus 141 ~k~GTv~~-di~~~i~~~k 158 (232)
-..|.++. |+.++++..+
T Consensus 155 ~LAGGl~~~NV~~ai~~~~ 173 (205)
T 1nsj_A 155 VLSGGLNPENVRSAIDVVR 173 (205)
T ss_dssp EEESSCCTTTHHHHHHHHC
T ss_pred EEECCCCHHHHHHHHHHHC
T ss_conf 7617788789999999768
No 12
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=44.74 E-value=7.1 Score=18.31 Aligned_cols=85 Identities=13% Similarity=0.059 Sum_probs=47.6
Q ss_pred CCCCCCCEEEEECHHH---------HHHHHHCCCCC----CCHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHH
Q ss_conf 7886540699975044---------57687412000----0278999997517533346886446778888643320010
Q gi|254780146|r 69 GTGVNVRVAVFATSSK---------ADEAREAGADI----VGGEDLFEIVKGGQIDFDRCIATPDMMPLVGRLGRILGPR 135 (232)
Q Consensus 69 ~~gk~~kV~Vf~~~~~---------~~~Ak~aGa~~----vg~~eli~~i~~~~~~fd~~iAt~~~m~~i~klgriLGPk 135 (232)
+.+|..||+++|.+-. .+.|++.|.++ ++..+ +.+-.-+||.++-.|.+.-....+-....+.
T Consensus 2 ~~~k~~kIlL~C~~GmSSsll~~km~~~a~~~~~~~~v~A~~~~~----~~~~~~~~DviLL~PQv~~~~~~i~~~~~~~ 77 (108)
T 3nbm_A 2 NASKELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGA----HYDIMGVYDLIILAPQVRSYYREMKVDAERL 77 (108)
T ss_dssp ---CCEEEEEEESSSSHHHHHHHHHHHHHHHHTCSEEEEEEETTS----CTTTGGGCSEEEECGGGGGGHHHHHHHHTTT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEHHH----HHHHHHCCCEEEECHHHHHHHHHHHHHHHHC
T ss_conf 977634699997999759999999999999769978999953899----9988642899998667999999999998773
Q ss_pred HC----CCCCCCCCCCCCHHHHHHHH
Q ss_conf 01----74223356665579999998
Q gi|254780146|r 136 GI----MPNLRVGTVTTDVATAVRES 157 (232)
Q Consensus 136 gl----MPn~k~GTv~~di~~~i~~~ 157 (232)
|. .|..--|.++.|-.++++-.
T Consensus 78 ~ipv~~I~~~~Yg~l~~dg~~~l~~i 103 (108)
T 3nbm_A 78 GIQIVATRGMEYIHLTKSPSKALQFV 103 (108)
T ss_dssp TCEEEECCHHHHHHHHTCHHHHHHHH
T ss_pred CCCEEEECHHHHHHHCCCHHHHHHHH
T ss_conf 99288728787400414999999999
No 13
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; HET: NAD; 2.05A {Pyrococcus horikoshii OT3} PDB: 2dfv_A* 3gfb_A*
Probab=43.96 E-value=13 Score=16.62 Aligned_cols=64 Identities=20% Similarity=0.157 Sum_probs=35.7
Q ss_pred CEEEEE-CHHHHHHHHHCCCCCCC---HHHHHHHHHCC--CCCCCEEEECHHHHHHHHHHHHHHHHHHCC
Q ss_conf 069997-50445768741200002---78999997517--533346886446778888643320010017
Q gi|254780146|r 75 RVAVFA-TSSKADEAREAGADIVG---GEDLFEIVKGG--QIDFDRCIATPDMMPLVGRLGRILGPRGIM 138 (232)
Q Consensus 75 kV~Vf~-~~~~~~~Ak~aGa~~vg---~~eli~~i~~~--~~~fd~~iAt~~~m~~i~klgriLGPkglM 138 (232)
+|.+.+ ..+..+.+++.||+.+- .++..+.+++. ...||.++-+..--..+...-..|.|.|.+
T Consensus 194 ~v~~~~~~~~~~~~~~~lGa~~vv~~~~~~~~~~~~~~~~~~g~d~v~D~~g~~~~~~~~~~~l~~~G~~ 263 (348)
T 2d8a_A 194 PVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLEFSGAPKALEQGLQAVTPAGRV 263 (348)
T ss_dssp SEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEEEEEECSCCHHHHHHHHHHEEEEEEE
T ss_pred EEEEEECCHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCEE
T ss_conf 7999969999999999709989988999899999999838998539999999889999999986248828
No 14
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P*
Probab=42.67 E-value=4.7 Score=19.42 Aligned_cols=10 Identities=40% Similarity=0.066 Sum_probs=3.8
Q ss_pred HHHHHHCCCC
Q ss_conf 5768741200
Q gi|254780146|r 85 ADEAREAGAD 94 (232)
Q Consensus 85 ~~~Ak~aGa~ 94 (232)
..+|+.+|||
T Consensus 123 i~ea~~~GAd 132 (452)
T 1pii_A 123 IYLARYYQAD 132 (452)
T ss_dssp HHHHHHTTCS
T ss_pred HHHHHHCCCC
T ss_conf 9999865898
No 15
>2ftc_G L11MT, MRP-L11, 39S ribosomal protein L11, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} PDB: 3iy9_G
Probab=37.31 E-value=10 Score=17.30 Aligned_cols=38 Identities=18% Similarity=0.106 Sum_probs=20.2
Q ss_pred CCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 33346886446778888643320010017422335666
Q gi|254780146|r 110 IDFDRCIATPDMMPLVGRLGRILGPRGIMPNLRVGTVT 147 (232)
Q Consensus 110 ~~fd~~iAt~~~m~~i~klgriLGPkglMPn~k~GTv~ 147 (232)
..|++.+-+|...-.|.+...+--..+..-....|+++
T Consensus 64 ksf~~~v~~P~~s~ll~k~~g~~kgs~~p~~~~vG~it 101 (145)
T 2ftc_G 64 RTFEIKIGQPTVSYFLKAAAGIEKGARQTGKEVAGLVT 101 (145)
T ss_pred CEEEEEECCCCHHHHHHHHCCCCCCCCCCCCEEEEEEC
T ss_conf 70999987998799999862888775556876761363
No 16
>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein structure initiative; 2.66A {Mycobacterium tuberculosis CDC1551} SCOP: c.2.1.1
Probab=31.10 E-value=24 Score=15.10 Aligned_cols=63 Identities=21% Similarity=0.238 Sum_probs=38.4
Q ss_pred CEEEEEC-HHHHHHHHHCCCCCCC---HHHHHHHHHCCC--CCCCEEEECHHHHHHHHHHHHHHHHHHCC
Q ss_conf 0699975-0445768741200002---789999975175--33346886446778888643320010017
Q gi|254780146|r 75 RVAVFAT-SSKADEAREAGADIVG---GEDLFEIVKGGQ--IDFDRCIATPDMMPLVGRLGRILGPRGIM 138 (232)
Q Consensus 75 kV~Vf~~-~~~~~~Ak~aGa~~vg---~~eli~~i~~~~--~~fd~~iAt~~~m~~i~klgriLGPkglM 138 (232)
++.+.+. .+..+.+++.||+.+. .+++.+++++-. ..+|.++.+..- +.+...-+.|.|.|.+
T Consensus 65 ~vi~~~~~~~~~~~~k~~Ga~~vi~~~~~~~~~~i~~~t~~~g~D~v~d~vg~-~~~~~~~~~l~~~G~~ 133 (198)
T 1pqw_A 65 RIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLAG-EAIQRGVQILAPGGRF 133 (198)
T ss_dssp EEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECCCT-HHHHHHHHTEEEEEEE
T ss_pred EEEEECCCHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCH-HHHHHHHHHHCCCCEE
T ss_conf 48986265799987405687089989997899999998489872799835768-9999999986699789
No 17
>3h4z_A Maltose-binding periplasmic protein fused with Al DERP7; MBP fusion, AHA1/BPI domain-like, super roll, sugar T transport, allergen; HET: GLC; 2.35A {Escherichia coli} PDB: 1mg1_A*
Probab=28.71 E-value=20 Score=15.51 Aligned_cols=134 Identities=20% Similarity=0.235 Sum_probs=68.3
Q ss_pred EEEEECCCCCCCCC-------EEEEECHHHHHHHHHCCCCCCCHHHHHHHHHCCC-C------CCCEEEECHHHHHHHHH
Q ss_conf 37995277886540-------6999750445768741200002789999975175-3------33468864467788886
Q gi|254780146|r 62 GVVTMPNGTGVNVR-------VAVFATSSKADEAREAGADIVGGEDLFEIVKGGQ-I------DFDRCIATPDMMPLVGR 127 (232)
Q Consensus 62 g~v~LPh~~gk~~k-------V~Vf~~~~~~~~Ak~aGa~~vg~~eli~~i~~~~-~------~fd~~iAt~~~m~~i~k 127 (232)
+...+|.+.|.... .+|....++.++|.+.=..+...+|-.+...... . .++-.++.- |.+..
T Consensus 243 ~va~lP~~~g~~~~~~~g~~~~~I~~~skn~eaA~~Fi~~~l~s~e~q~~~~~~~~~~~~~~~~~~~~~~~d---p~~~~ 319 (568)
T 3h4z_A 243 GVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKD---PRIAA 319 (568)
T ss_dssp EEECCCEETTEECCCEEEEEEEEEBTTCSCHHHHHHHHHHTTSSHHHHHHHHHHSCCSEESBHHHHHHGGGC---HHHHH
T ss_pred EEEECCCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHC---HHHHH
T ss_conf 899837879998764571389999898988999999999982699999999970798866245420334449---26999
Q ss_pred HHHHHHHHHCCCC-CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 4332001001742-23356665579999998601110223575267875315778989999999999999986
Q gi|254780146|r 128 LGRILGPRGIMPN-LRVGTVTTDVATAVRESKSGAVDFRSEKAGIIHAGIGKVSFENKKIEENVLAFVSAVVK 199 (232)
Q Consensus 128 lgriLGPkglMPn-~k~GTv~~di~~~i~~~k~g~i~~r~~k~g~i~~~IG~~~m~~e~i~eNi~~~~~~i~~ 199 (232)
+...+....-||+ |..+.+...+...+..+..|+..-. +-.-.+...+....-.-|++.+|+..+++.|..
T Consensus 320 ~~e~~~~~~~~P~~p~~~~i~~~~~~ai~~vl~G~~spe-eAL~~aq~~~~a~~~~~e~~~~~~~~~~~~~~~ 391 (568)
T 3h4z_A 320 TMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVD-AALAAAQTNAAADPIHYDKITEEINKAVDEAVA 391 (568)
T ss_dssp HHHHHHHSEECCCCTTHHHHHHHHHHHHHHHHHTSSCHH-HHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCEECCCCCCHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_conf 999983180178897889999999999999983989999-999999999976765399999999999999999
No 18
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=25.73 E-value=12 Score=16.98 Aligned_cols=17 Identities=41% Similarity=0.880 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 67788886433200100
Q gi|254780146|r 120 DMMPLVGRLGRILGPRG 136 (232)
Q Consensus 120 ~~m~~i~klgriLGPkg 136 (232)
+-.|...-.|++|||||
T Consensus 16 ~~~P~fNfvG~IlGPrG 32 (131)
T 1k1g_A 16 DEYPEINFVGLLIGPRG 32 (131)
T ss_dssp TTCCSHHHHHHHHCSSS
T ss_pred CCCCCCCEEEEEECCCC
T ss_conf 66899872537766985
No 19
>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 1.96A {Novosphingobium aromaticivorans DSM12444}
Probab=23.80 E-value=34 Score=14.11 Aligned_cols=63 Identities=25% Similarity=0.245 Sum_probs=37.7
Q ss_pred CCEEEEECHHHHHHHHHCCCCCCCH----HHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCC
Q ss_conf 4069997504457687412000027----8999997517533346886446778888643320010017
Q gi|254780146|r 74 VRVAVFATSSKADEAREAGADIVGG----EDLFEIVKGGQIDFDRCIATPDMMPLVGRLGRILGPRGIM 138 (232)
Q Consensus 74 ~kV~Vf~~~~~~~~Ak~aGa~~vg~----~eli~~i~~~~~~fd~~iAt~~~m~~i~klgriLGPkglM 138 (232)
.+|.+.+.++..+.+++.|++.+.. ++.+.++..+. .||++|-+..- +.+...-..|.|.|.+
T Consensus 176 ~~vi~~~~~~~~~~~~~~g~~~v~~~~~~~~~v~~~t~g~-g~Dvvid~~g~-~~~~~~l~~l~~~G~~ 242 (343)
T 3gaz_A 176 ARVFATARGSDLEYVRDLGATPIDASREPEDYAAEHTAGQ-GFDLVYDTLGG-PVLDASFSAVKRFGHV 242 (343)
T ss_dssp CEEEEEECHHHHHHHHHHTSEEEETTSCHHHHHHHHHTTS-CEEEEEESSCT-HHHHHHHHHEEEEEEE
T ss_pred CCEEEEECCHHHHHHHHCCCEEEEECCCHHHHHHHHHCCC-CCEEEEECCCC-HHHHHHHHHHCCCCEE
T ss_conf 9516754542256788659809996687688899986799-94699989971-6478888863589889
No 20
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=23.41 E-value=29 Score=14.55 Aligned_cols=11 Identities=27% Similarity=0.319 Sum_probs=9.5
Q ss_pred EEEEEECCCCC
Q ss_conf 99999238972
Q gi|254780146|r 212 RVTLSSTMGCG 222 (232)
Q Consensus 212 ~v~lssTmGp~ 222 (232)
++||+||+||-
T Consensus 88 qi~lkS~~GPI 98 (106)
T 2aze_B 88 QISLKSKQGPI 98 (106)
T ss_dssp EEEEECSSSCC
T ss_pred EEEEECCCCCE
T ss_conf 99996699987
No 21
>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA; 2.30A {Thermus thermophilus HB8}
Probab=23.13 E-value=35 Score=14.03 Aligned_cols=64 Identities=19% Similarity=0.142 Sum_probs=34.5
Q ss_pred CCEEEEEC-HHHHHHHHHCCCCCCC---HHHHHHHHHCC--CCCCCEEEECHHHHHHHHHHHHHHHHHHCC
Q ss_conf 40699975-0445768741200002---78999997517--533346886446778888643320010017
Q gi|254780146|r 74 VRVAVFAT-SSKADEAREAGADIVG---GEDLFEIVKGG--QIDFDRCIATPDMMPLVGRLGRILGPRGIM 138 (232)
Q Consensus 74 ~kV~Vf~~-~~~~~~Ak~aGa~~vg---~~eli~~i~~~--~~~fd~~iAt~~~m~~i~klgriLGPkglM 138 (232)
.+|.+++. .+..+.|++.||+.+- .+++.+.+.+- -..+|.++.+..-. .+...-..|.|.|.+
T Consensus 192 ~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~Dvvid~~~~~-~~~~~~~~l~~~G~~ 261 (343)
T 2eih_A 192 ARVIATAGSEDKLRRAKALGADETVNYTHPDWPKEVRRLTGGKGADKVVDHTGAL-YFEGVIKATANGGRI 261 (343)
T ss_dssp CEEEEEESSHHHHHHHHHHTCSEEEETTSTTHHHHHHHHTTTTCEEEEEESSCSS-SHHHHHHHEEEEEEE
T ss_pred CEEEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCEEEEECCCCH-HHHHHHHHHCCCCEE
T ss_conf 9999997999999999965998999699999999999984898766999513421-445545421489679
No 22
>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase; 1.30A {Burkholderia SP}
Probab=22.86 E-value=35 Score=13.99 Aligned_cols=116 Identities=21% Similarity=0.236 Sum_probs=53.9
Q ss_pred CCEEEEE-CHHHHHHHHHCCCCCCC---HHHHHHHHHC--CCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 4069997-50445768741200002---7899999751--7533346886446778888643320010017422335666
Q gi|254780146|r 74 VRVAVFA-TSSKADEAREAGADIVG---GEDLFEIVKG--GQIDFDRCIATPDMMPLVGRLGRILGPRGIMPNLRVGTVT 147 (232)
Q Consensus 74 ~kV~Vf~-~~~~~~~Ak~aGa~~vg---~~eli~~i~~--~~~~fd~~iAt~~~m~~i~klgriLGPkglMPn~k~GTv~ 147 (232)
.+|.+.. +.+..+.|++.||+.+- .+|+.+.+.+ +...||.+|-...- +.+...-+.|.|.|.+-. .|...
T Consensus 171 ~~vi~~~~~~~~~~~~~~~Ga~~~v~~~~~d~~~~v~~~~~g~g~D~vid~~G~-~~~~~~~~~l~~~G~~v~--~G~~~ 247 (333)
T 1wly_A 171 ATVIGTVSTEEKAETARKLGCHHTINYSTQDFAEVVREITGGKGVDVVYDSIGK-DTLQKSLDCLRPRGMCAA--YGHAS 247 (333)
T ss_dssp CEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEECSCT-TTHHHHHHTEEEEEEEEE--CCCTT
T ss_pred CEEEEECCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCEEEEECCCH-HHHHHHHHHHCCCCEEEE--ECCCC
T ss_conf 989997799899999997699899979999999999998589992099989698-999999998504979999--83567
Q ss_pred --CC-HHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf --55-79999998601110223575267875315778989999999999999986
Q gi|254780146|r 148 --TD-VATAVRESKSGAVDFRSEKAGIIHAGIGKVSFENKKIEENVLAFVSAVVK 199 (232)
Q Consensus 148 --~d-i~~~i~~~k~g~i~~r~~k~g~i~~~IG~~~m~~e~i~eNi~~~~~~i~~ 199 (232)
.+ .........++.+ ......++....+...+.+.+..+++.+.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (333)
T 1wly_A 248 GVADPIRVVEDLGVRGSL-------FITRPALWHYMSNRSEIDEGSKCLFDAVKA 295 (333)
T ss_dssp CCCCCCCHHHHTTTTTSC-------EEECCCGGGGSCSHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHEEE-------EEEEEEEEEECCCHHHHHHHHHHHHHHHHC
T ss_conf 876510355664310489-------998641003227999999999999999987
No 23
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=22.71 E-value=36 Score=13.97 Aligned_cols=40 Identities=20% Similarity=0.377 Sum_probs=20.4
Q ss_pred CCCCCCCEEEEECH---HHHHHHHHCCCCCCCHHHHHHHHHCC
Q ss_conf 78865406999750---44576874120000278999997517
Q gi|254780146|r 69 GTGVNVRVAVFATS---SKADEAREAGADIVGGEDLFEIVKGG 108 (232)
Q Consensus 69 ~~gk~~kV~Vf~~~---~~~~~Ak~aGa~~vg~~eli~~i~~~ 108 (232)
...+++..+|.++. ...+.|++.|..++..+++++.+++.
T Consensus 66 sVt~~t~~LV~G~~~g~sK~~kA~~lgI~Ii~E~~f~~ll~~~ 108 (109)
T 2k6g_A 66 NVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRNL 108 (109)
T ss_dssp SCCTTCCEEEECBCCCHHHHHHHHHHTCEEECHHHHHHHHHHT
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHCCCCEECHHHHHHHHHHC
T ss_conf 6146656899818999799999998399682599999999856
No 24
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=22.53 E-value=11 Score=17.12 Aligned_cols=14 Identities=64% Similarity=1.130 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 88886433200100
Q gi|254780146|r 123 PLVGRLGRILGPRG 136 (232)
Q Consensus 123 ~~i~klgriLGPkg 136 (232)
|...-.|++|||||
T Consensus 14 P~~NfvG~IiGPrG 27 (140)
T 2bl5_A 14 PDFNFVGRILGPRG 27 (140)
T ss_dssp SSSCHHHHHTTTTH
T ss_pred CCCCEEEEEECCCC
T ss_conf 99986358888997
No 25
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=21.52 E-value=14 Score=16.56 Aligned_cols=28 Identities=14% Similarity=0.252 Sum_probs=23.6
Q ss_pred CCCEEEECHHHHHHHHHHHHHHHHHHCC
Q ss_conf 3346886446778888643320010017
Q gi|254780146|r 111 DFDRCIATPDMMPLVGRLGRILGPRGIM 138 (232)
Q Consensus 111 ~fd~~iAt~~~m~~i~klgriLGPkglM 138 (232)
.||.++|..+...-+..+.|+|.|-|.+
T Consensus 111 ~FD~V~s~~~~~~~l~ei~rvLkPGG~l 138 (226)
T 3m33_A 111 PFGLIVSRRGPTSVILRLPELAAPDAHF 138 (226)
T ss_dssp CEEEEEEESCCSGGGGGHHHHEEEEEEE
T ss_pred CEEEEEECCCHHHHHHHHHHHCCCCCEE
T ss_conf 6469997689999999999981978189
No 26
>1vq8_I 50S ribosomal protein L11P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.4.7.1 PDB: 1vq4_I* 1vq5_I* 1vq6_I* 1vq7_I* 1s72_I* 1vq9_I* 1vqk_I* 1vql_I* 1vqm_I* 1vqn_I* 1vqo_I* 1vqp_I* 1yhq_I* 1yi2_I* 1yij_I* 1yit_I* 1yj9_I* 1yjn_I* 1yjw_I* 2otl_I* ...
Probab=20.79 E-value=18 Score=15.83 Aligned_cols=69 Identities=13% Similarity=0.118 Sum_probs=32.2
Q ss_pred CCEEEEECHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 40699975044576874120000278999997517533346886446778888643320010017422335666
Q gi|254780146|r 74 VRVAVFATSSKADEAREAGADIVGGEDLFEIVKGGQIDFDRCIATPDMMPLVGRLGRILGPRGIMPNLRVGTVT 147 (232)
Q Consensus 74 ~kV~Vf~~~~~~~~Ak~aGa~~vg~~eli~~i~~~~~~fd~~iAt~~~m~~i~klgriLGPkglMPn~k~GTv~ 147 (232)
..+..||++=....+.-.|..+ -.+-.......|++.+.+|..--.|.+...+--..+.-..-..|+++
T Consensus 29 ini~~f~k~fN~~T~~~~g~~v-----~V~i~v~~dksf~~~v~~Pp~s~llkkaagi~kgs~~p~~~~vG~It 97 (162)
T 1vq8_I 29 VDVQAVVQEINDQTAAFDGTEV-----PVTVKYDDDGSFEIEVGVPPTAELIKDEAGFETGSGEPQEDFVADLS 97 (162)
T ss_dssp -------------------------------------------CCCCHHHHHHHTTSCCSCCSSTTTSCCEEEC
T ss_pred CCHHHHHHHHHHHHHHCCCCEE-----EEEEEEECCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCEEC
T ss_conf 8989999999999875389766-----69999974885689985898799999972667778999975466064
No 27
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=20.20 E-value=40 Score=13.65 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=12.8
Q ss_pred CCCCCEEEEECH------HHHHHHHHCCCC
Q ss_conf 865406999750------445768741200
Q gi|254780146|r 71 GVNVRVAVFATS------SKADEAREAGAD 94 (232)
Q Consensus 71 gk~~kV~Vf~~~------~~~~~Ak~aGa~ 94 (232)
.|-.+|||||.. ...+.|++.|..
T Consensus 7 ~k~k~V~VF~gS~~~~~~~~~~~a~~lG~~ 36 (216)
T 1ydh_A 7 SRFRKICVFCGSHSGHREVFSDAAIELGNE 36 (216)
T ss_dssp CSCSEEEEECCSCCCSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 568539998757899693899999999999
Done!