RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780146|ref|YP_003064559.1| 50S ribosomal protein L1
[Candidatus Liberibacter asiaticus str. psy62]
         (232 letters)



>2ftc_A Mitochondrial ribosomal protein L1; mitochondrial ribosome,
           large ribosomal subunit, ribosomal RNA; 12.10A {Bos
           taurus} (A:)
          Length = 189

 Score =  187 bits (476), Expect = 1e-48
 Identities = 36/191 (18%), Positives = 82/191 (42%), Gaps = 6/191 (3%)

Query: 43  VEIAMNLGIDPRHANQMVRGVVTMPNGTGVNVRVAVFAT--SSKADEAREAGADIVGGED 100
           +++ +++ +  +   +    V+++P      +      T  +S+   A E GA   GG  
Sbjct: 1   LDLTLDMALGKKKNVEPFTSVLSLPYPFASEINKVAVFTENASEVKIAEENGAAFAGGTS 60

Query: 101 LFEIVKGGQIDFDRCIATPDMMPLVGRLGRILGPRGIMPNLRVGTVTTDVATAVRESKSG 160
           L + +   +I  D  +A P++MP + RL + L  +    +    ++  D+   +   K+G
Sbjct: 61  LIQKIWDDEIVADFYVAVPEIMPELNRLRKKLNKKYPKLS--RNSIGRDIPKMLELFKNG 118

Query: 161 -AVDFRSEKAGIIHAGIGKVSFENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTM 219
             +    E+   +   I  +   + +I  N+ A ++ V + +P    G +V R  L S+ 
Sbjct: 119 HEIKVDEERENFLQTKIATLDMSSDQIAANLQAVINEVCRHRPL-NLGPFVVRAFLRSST 177

Query: 220 GCGIKVDLSSF 230
             G+ + +   
Sbjct: 178 SEGLLLKIDPL 188


>2ov7_A 50S ribosomal protein L1; 2.30A {Thermus thermophilus} PDB:
           2oum_A 2vpl_A (A:18-137)
          Length = 120

 Score =  136 bits (344), Expect = 3e-33
 Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 8/126 (6%)

Query: 104 IVKGGQIDFDRCIATPDMMPLVGRLGRILGPRGIMPNLRVGTVTTDVATAVRESKSGAVD 163
                     + +AT      V          GI P      V       V     G ++
Sbjct: 3   YTIDEAAHLVKELATAKFDETVEVHA----KLGIDPRRSDQNVRG----TVSLPHGGRIE 54

Query: 164 FRSEKAGIIHAGIGKVSFENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTMGCGI 223
           FR++K G IHA +GK SF  +K+ +N+ AF+ A+   KP  AKG +++ V +++TMG  +
Sbjct: 55  FRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSV 114

Query: 224 KVDLSS 229
           +++  S
Sbjct: 115 RINPHS 120


>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach
           chloroplast ribosome, ribonucleoprotein particle,
           macromolecular complex; 9.40A {Spinacea oleracea}
           (D:184-271)
          Length = 88

 Score =  131 bits (332), Expect = 8e-32
 Identities = 54/88 (61%), Positives = 64/88 (72%)

Query: 71  GVNVRVAVFATSSKADEAREAGADIVGGEDLFEIVKGGQIDFDRCIATPDMMPLVGRLGR 130
           G  V++AV A   K DEA+ AGADIVGGE+L E +KGG +DFD+ IAT DMM  V  LGR
Sbjct: 1   GKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMAKVASLGR 60

Query: 131 ILGPRGIMPNLRVGTVTTDVATAVRESK 158
           ILGPRG+MP  + GTVT +VA AV E K
Sbjct: 61  ILGPRGLMPTPKAGTVTPNVAQAVEEFK 88


>1ad2_A TL2, ribosomal protein L1; RNA binding, protein synthesis,
           mutant; 1.90A {Thermus thermophilus} (A:69-159)
          Length = 91

 Score =  119 bits (299), Expect = 5e-28
 Identities = 46/91 (50%), Positives = 60/91 (65%), Gaps = 1/91 (1%)

Query: 71  GVNVRVAVFATSSKADEAREAGADIVGGEDLFEIVKGGQIDFDRCIATPDMMPLVGR-LG 129
           G  VRV   A   K  EA EAGAD VGGE++ + +  G +DFD  +ATPD+M  VG  LG
Sbjct: 1   GKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLG 60

Query: 130 RILGPRGIMPNLRVGTVTTDVATAVRESKSG 160
           RILGPRG++PN + GTV  ++   +RE K+G
Sbjct: 61  RILGPRGLLPNPKAGTVGFNIGEIIREIKAG 91


>3fik_5 50S ribosomal protein L1; ribosome, decoding, tRNA, EF-TU,
           ternary complex, acetylation, ribonucleoprotein,
           ribosomal protein, RNA-binding; 6.70A {Escherichia coli}
           PDB: 2rdo_9 2gya_2 2gyc_2 (5:1-71,5:134-234)
          Length = 172

 Score =  116 bits (292), Expect = 3e-27
 Identities = 52/100 (52%), Positives = 75/100 (75%)

Query: 132 LGPRGIMPNLRVGTVTTDVATAVRESKSGAVDFRSEKAGIIHAGIGKVSFENKKIEENVL 191
            G RG+MPN +VGTVT +VA AV+ +K+G V +R++K GIIH  IGKV F+  K++EN+ 
Sbjct: 69  TGRRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDADKLKENLE 128

Query: 192 AFVSAVVKAKPSVAKGDYVKRVTLSSTMGCGIKVDLSSFS 231
           A + A+ KAKP+ AKG Y+K+V++S+TMG G+ VD +  S
Sbjct: 129 ALLVALKKAKPTQAKGVYIKKVSISTTMGAGVAVDQAGLS 168



 Score = 99.5 bits (248), Expect = 3e-22
 Identities = 32/69 (46%), Positives = 53/69 (76%)

Query: 3  SKISKRMQQISQGIDRSALYGLSDAVVMLKERATARFDETVEIAMNLGIDPRHANQMVRG 62
          +K++KRM+ I + +D +  Y +++A+ +LKE ATA+F E+V++A+NLGID R ++Q VRG
Sbjct: 2  AKLTKRMRVIREKVDATKQYDINEAIALLKELATAKFVESVDVAVNLGIDARKSDQNVRG 61

Query: 63 VVTMPNGTG 71
             +P+GTG
Sbjct: 62 ATVLPHGTG 70


>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein,
           translational repressor, ribosome; 1.85A
           {Methanocaldococcus jannaschii} (A:55-148)
          Length = 94

 Score =  110 bits (277), Expect = 2e-25
 Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 9/96 (9%)

Query: 71  GVNVRVAVFATSSKADEAREAGADIVGGEDLFE------IVKGGQIDFDRCIATPDMMPL 124
           G   ++AV  T   A +A E G  ++  E++ E       ++      D  IA  D+MPL
Sbjct: 1   GKEAKIAVIGTGDLAKQAEELGLTVIRKEEIEELGKNKRKLRKIAKAHDFFIAQADLMPL 60

Query: 125 VGR-LGRILGPRGIMPNLRVGTVTTDVATAVRESKS 159
           +GR +G ILGPRG MP         ++   V   K 
Sbjct: 61  IGRYMGVILGPRGKMPKPV--PANANIKPLVERLKK 94


>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S
           ribosomal subunit, ribosomal protein/RNA complex; 8.70A
           {Canis familiaris} (5:55-147)
          Length = 93

 Score =  109 bits (275), Expect = 2e-25
 Identities = 30/95 (31%), Positives = 39/95 (41%), Gaps = 9/95 (9%)

Query: 71  GVNVRVAVFATSSKADEAREAGADIVGGEDLFE------IVKGGQIDFDRCIATPDMMPL 124
           G    + VFA    A  A E   D++  ++L E        K    D D  IA   +M  
Sbjct: 1   GQETTIVVFAEGETALRAEEVADDVLDEDELEELGGDDDAAKDLADDTDFFIAEKGLMQD 60

Query: 125 VGR-LGRILGPRGIMPNLRVGTVTTDVATAVRESK 158
           +GR LG +LGPRG MP         DV   +   K
Sbjct: 61  IGRYLGTVLGPRGKMPEPLDPDD--DVVEVIERMK 93


>2noq_G 60S ribosomal protein L1; IRES RNA, ribosome, translation,
           internal initiation; 7.30A {Saccharomyces cerevisiae}
           PDB: 1s1i_A (G:57-149)
          Length = 93

 Score =  108 bits (271), Expect = 8e-25
 Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 9/93 (9%)

Query: 73  NVRVAVFATSSKADEAREAGADIVGGEDLFEI------VKGGQIDFDRCIATPDMMPLVG 126
           N+ + +F  +   D A+  G D +  +DL ++      +K     ++  IA+  ++  V 
Sbjct: 3   NMSICIFGDAFDVDRAKSCGVDAMSVDDLKKLNKNKKLIKKLSKKYNAFIASEVLIKQVP 62

Query: 127 R-LGRILGPRGIMPNLRVGTVTTDVATAVRESK 158
           R LG  L   G  P         D+   V + +
Sbjct: 63  RLLGPQLSKAGKFPTPVSHND--DLYGKVTDVR 93


>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex;
           2.65A {Sulfolobus acidocaldarius} (A:59-152)
          Length = 94

 Score =  105 bits (265), Expect = 4e-24
 Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 10/96 (10%)

Query: 71  GVNVRVAVFATSSKADEAREAGADIVGGEDLFEIVKGGQ-------IDFDRCIATPDMMP 123
               RV V  +S + + A++A   +V   +  + ++G +          +  +   +   
Sbjct: 1   SKAKRVLVVPSSEQLEYAKKASPKVVITREELQKLQGQKRPVKKLARQNEWFLINQESXA 60

Query: 124 LVGR-LGRILGPRGIMPNLRVGTVTTDVATAVRESK 158
           L GR LG  LGPRG  P     T   D++  +   K
Sbjct: 61  LAGRILGPALGPRGKFPTPLPNTA--DISEYINRFK 94


>3fik_5 50S ribosomal protein L1; ribosome, decoding, tRNA, EF-TU,
           ternary complex, acetylation, ribonucleoprotein,
           ribosomal protein, RNA-binding; 6.70A {Escherichia coli}
           PDB: 2rdo_9 2gya_2 2gyc_2 (5:72-133)
          Length = 62

 Score =  105 bits (263), Expect = 8e-24
 Identities = 32/62 (51%), Positives = 48/62 (77%)

Query: 73  NVRVAVFATSSKADEAREAGADIVGGEDLFEIVKGGQIDFDRCIATPDMMPLVGRLGRIL 132
           +VRVAVF   + A+ A+ AGA++VG EDL + +K G+++FD  IA+PD M +VG+LG++L
Sbjct: 1   SVRVAVFTQGANAEAAKAAGAELVGMEDLADQIKKGEMNFDVVIASPDAMRVVGQLGQVL 60

Query: 133 GP 134
           GP
Sbjct: 61  GP 62


>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach
           chloroplast ribosome, ribonucleoprotein particle,
           macromolecular complex; 9.40A {Spinacea oleracea}
           (D:1-183,D:272-352)
          Length = 264

 Score =  104 bits (261), Expect = 1e-23
 Identities = 27/73 (36%), Positives = 44/73 (60%)

Query: 159 SGAVDFRSEKAGIIHAGIGKVSFENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSST 218
            G V+FR +K GI+H   GK++FE + +  N+ A + +V   KP+ AKG Y K   +SS+
Sbjct: 184 KGKVEFRVDKTGIVHIPFGKLNFEEEDLLINLFATIKSVETNKPTGAKGVYWKSAHISSS 243

Query: 219 MGCGIKVDLSSFS 231
           MG  I++++    
Sbjct: 244 MGPSIRLNIREML 256



 Score = 99.2 bits (247), Expect = 4e-22
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 1   MVSKISKRMQQISQGIDRSALYGLSDAVVMLKERATARFDETVEIAMNLGIDPRHANQMV 60
                SKR  +I +  +    Y L  A+ ++K+ ++ +F ET E    L IDP++ +Q +
Sbjct: 114 SDRTRSKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQL 173

Query: 61  RGVVTMPNGTG--VNVRV 76
           R  V++P GT   V  RV
Sbjct: 174 RATVSLPKGTKGKVEFRV 191


>1ad2_A TL2, ribosomal protein L1; RNA binding, protein synthesis,
           mutant; 1.90A {Thermus thermophilus} (A:1-68,A:160-228)
          Length = 137

 Score =  101 bits (253), Expect = 1e-22
 Identities = 25/68 (36%), Positives = 46/68 (67%)

Query: 162 VDFRSEKAGIIHAGIGKVSFENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTMGC 221
           ++FR++K G IHA +GK  F  +K+ +N+ AF+ A+   KP  AKG +++ V +++TMG 
Sbjct: 70  IEFRNDKTGAIHAPVGKACFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGP 129

Query: 222 GIKVDLSS 229
            ++++  S
Sbjct: 130 SVRINPHS 137



 Score =  100 bits (252), Expect = 1e-22
 Identities = 31/73 (42%), Positives = 49/73 (67%)

Query: 4  KISKRMQQISQGIDRSALYGLSDAVVMLKERATARFDETVEIAMNLGIDPRHANQMVRGV 63
          K  KR + + + +D + +Y + +A  ++KE ATA+FDETVE+   LGIDPR ++Q VRG 
Sbjct: 2  KHGKRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGT 61

Query: 64 VTMPNGTGVNVRV 76
          V++P+G  +  R 
Sbjct: 62 VSLPHGLRIEFRN 74


>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein,
           translational repressor, ribosome; 1.85A
           {Methanocaldococcus jannaschii} (A:1-54,A:149-219)
          Length = 125

 Score = 90.1 bits (224), Expect = 2e-19
 Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 2/70 (2%)

Query: 162 VDFRSEKAGIIHAGIGKVSFENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTMGC 221
           V   +         +G     +++I +N+ A ++ V K         ++K   +  TMG 
Sbjct: 56  VVINTRDKPYFQVLVGNEKMTDEQIVDNIEAVLNVVAKKYEKGLY--HIKDAYVKLTMGP 113

Query: 222 GIKVDLSSFS 231
            +KV      
Sbjct: 114 AVKVKKEKAK 123



 Score = 69.7 bits (171), Expect = 3e-13
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 16 IDRSALYGLSDAVVMLKERA-TARFDETVEIAMNL-GIDPRHANQMVRGVVTMPNGTGVN 73
          +DR AL     AV   +E A    F ++ E    L  ID R     ++  V +P+G  V 
Sbjct: 1  MDREALL---QAVKEARELAKPRNFTQSFEFIATLKEIDMRKPENRIKTEVVLPHGRTVV 57

Query: 74 VRV 76
          +  
Sbjct: 58 INT 60


>2noq_G 60S ribosomal protein L1; IRES RNA, ribosome, translation,
           internal initiation; 7.30A {Saccharomyces cerevisiae}
           PDB: 1s1i_A (G:1-56,G:150-213)
          Length = 120

 Score = 86.3 bits (214), Expect = 3e-18
 Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 160 GAVDFRSEKAGIIHAGIGKVSFENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTM 219
             + F+ +K   +   +G V  E   +   +L  V+  V       +   V  + + S+M
Sbjct: 57  STIKFQLKKVLCLAVAVGNVEMEEDVLVNQILMSVNFFVSLLKKNWQ--NVGSLVVKSSM 114

Query: 220 GCGIKV 225
           G   ++
Sbjct: 115 GPAFRL 120


>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex;
           2.65A {Sulfolobus acidocaldarius} (A:1-58,A:153-217)
          Length = 123

 Score = 84.3 bits (209), Expect = 1e-17
 Identities = 11/67 (16%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 160 GAVDFRSEKAGIIHAGIGKVSFENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTM 219
            +V  +++    +   IG    + + + EN +A ++A+            ++ + + +T 
Sbjct: 59  RSVLVKTKDQPQVQVFIGTEDXKPEDLAENAIAVLNAIENKAK---VETNLRNIYVKTTX 115

Query: 220 GCGIKVD 226
           G  +KV 
Sbjct: 116 GKAVKVK 122



 Score = 71.6 bits (176), Expect = 1e-13
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 16 IDRSALYGLSDAVVMLKERATARFDETVEIAMNL-GIDPRHANQMVRGVVTMPNGTG-VN 73
           D+ +L       +  +      F ++VEI +   GID +  +  +R +V +P     V 
Sbjct: 3  ADKESLIEALKLALSTEYNVKRNFTQSVEIILTFKGIDXKKGDLKLREIVPLPKQPRSVL 62

Query: 74 VRV 76
          V+ 
Sbjct: 63 VKT 65


>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S
           ribosomal subunit, ribosomal protein/RNA complex; 8.70A
           {Canis familiaris} (5:1-54,5:148-212)
          Length = 119

 Score = 83.5 bits (207), Expect = 2e-17
 Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 2/66 (3%)

Query: 160 GAVDFRSEKAGIIHAGIGKVSFENKKIEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTM 219
             V  RS +    H  +G      + I +N+   +  +            +  V + +TM
Sbjct: 55  NTVQLRSGERRTFHTRVGAEDMSAENIADNIDVILRRLHADLEKGPLN--IDTVYVKTTM 112

Query: 220 GCGIKV 225
           G  ++V
Sbjct: 113 GPAMEV 118



 Score = 68.9 bits (169), Expect = 5e-13
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 6/64 (9%)

Query: 16 IDRSALYGLSDAVVMLKERATAR-FDETVEIAMNL-GIDPRHANQMVRGVVTMPNGTG-V 72
          +    +    +AV    E A  R F ETV++A+NL  +D    +  V   V +P GT  V
Sbjct: 1  MADQEIE---NAVSRALEDAPERNFRETVDLAVNLRDLDLNDPSNRVDESVVLPAGTNTV 57

Query: 73 NVRV 76
           +R 
Sbjct: 58 QLRS 61


>2pff_A Fatty acid synthase subunit alpha,
          3-oxoacyl-[acyl-carrier-; fatty acid synthase,
          acyl-carrier-protein, beta-ketoacyl reductase,
          beta-ketoacyl synthase, dehydratase; 4.00A
          {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
          Length = 258

 Score = 27.5 bits (61), Expect = 1.6
 Identities = 7/41 (17%), Positives = 11/41 (26%), Gaps = 8/41 (19%)

Query: 4  KISKRMQQISQGIDRSALYGLSDAVVMLKERATARFDETVE 44
          ++  R  QI   ++             LK  A     E   
Sbjct: 32 QLVTREAQIKDWVENELEA--------LKLEAEEIPSEDQN 64


>2gx8_A NIF3-related protein; structural genomics, unknown
          function, PSI, protein structure initiative; HET: EPE;
          2.20A {Bacillus cereus atcc 14579} (A:1-132,A:360-397)
          Length = 170

 Score = 26.0 bits (57), Expect = 3.9
 Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 10/88 (11%)

Query: 13 SQGID--RSALYGLSDAV--VMLKERATARFDETVEIAMNLGIDPRHANQMVRGVVTMPN 68
          S G+D     LY  S+A+  +       + F+      + +  D       +   +   N
Sbjct: 8  SSGVDLGTENLYFQSNAMSKIPNGHEIISLFESMYPKHLAMEGDK------IGLQIGALN 61

Query: 69 GTGVNVRVAVFATSSKADEAREAGADIV 96
              +V +A+  T    DEA + GA+++
Sbjct: 62 KPVRHVLIALDVTEEVVDEAIQLGANVI 89


>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel
           beta-sheet, DNA replication, clamp loader, RFC1,
           structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
          Length = 112

 Score = 25.3 bits (55), Expect = 7.7
 Identities = 8/48 (16%), Positives = 19/48 (39%)

Query: 63  VVTMPNGTGVNVRVAVFATSSKADEAREAGADIVGGEDLFEIVKGGQI 110
           V    +     + +   +  SK+D+A   G  I+  + L  +++    
Sbjct: 53  VTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRTMPG 100


>3f8x_A Putative delta-5-3-ketosteroid isomerase; YP_050331.1,
           structural genomics, joint center for structural
           genomics, JCSG; HET: MSE; 1.55A {Pectobacterium
           atrosepticum SCRI1043} (A:)
          Length = 148

 Score = 24.9 bits (54), Expect = 8.6
 Identities = 10/38 (26%), Positives = 13/38 (34%), Gaps = 2/38 (5%)

Query: 98  GEDLFEIVKGGQIDFDRCIATPDMMPLVGRLGRILGPR 135
           G DL E    G+I             +V  L   +G R
Sbjct: 107 GVDLIEFNDAGKITDLV--VXXRPASVVIDLSVEVGKR 142


>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD
           biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia
           coli} (A:239-354)
          Length = 116

 Score = 24.9 bits (54), Expect = 9.4
 Identities = 7/29 (24%), Positives = 9/29 (31%)

Query: 26  DAVVMLKERATARFDETVEIAMNLGIDPR 54
           D      +     F    E  + LGID  
Sbjct: 74  DISHKPADFIRQHFPMIYEKLLGLGIDLT 102


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.318    0.134    0.367 

Gapped
Lambda     K      H
   0.267   0.0440    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,672,157
Number of extensions: 75255
Number of successful extensions: 294
Number of sequences better than 10.0: 1
Number of HSP's gapped: 270
Number of HSP's successfully gapped: 40
Length of query: 232
Length of database: 4,956,049
Length adjustment: 86
Effective length of query: 146
Effective length of database: 2,048,819
Effective search space: 299127574
Effective search space used: 299127574
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.9 bits)