RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780146|ref|YP_003064559.1| 50S ribosomal protein L1
[Candidatus Liberibacter asiaticus str. psy62]
(232 letters)
>d1ad2a_ e.24.1.1 (A:) Ribosomal protein L1 {Thermus thermophilus
[TaxId: 274]}
Length = 224
Score = 234 bits (599), Expect = 4e-63
Identities = 100/224 (44%), Positives = 152/224 (67%), Gaps = 1/224 (0%)
Query: 7 KRMQQISQGIDRSALYGLSDAVVMLKERATARFDETVEIAMNLGIDPRHANQMVRGVVTM 66
KR + + + +D + +Y + +A ++KE ATA+FDETVE+ LGIDPR ++Q VRG V++
Sbjct: 1 KRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSL 60
Query: 67 PNGTGVNVRVAVFATSSKADEAREAGADIVGGEDLFEIVKGGQIDFDRCIATPDMMPLVG 126
P+G G VRV A K EA EAGAD VGGE++ + + G +DFD +ATPD+M VG
Sbjct: 61 PHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVG 120
Query: 127 R-LGRILGPRGIMPNLRVGTVTTDVATAVRESKSGAVDFRSEKAGIIHAGIGKVSFENKK 185
LGRILGPRG++PN + GTV ++ +RE K+G ++FR++K G IHA +GK F +K
Sbjct: 121 SKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKACFPPEK 180
Query: 186 IEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTMGCGIKVDLSS 229
+ +N+ AF+ A+ KP AKG +++ V +++TMG ++++ S
Sbjct: 181 LADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRINPHS 224
>d1i2aa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Methanococcus
jannaschii [TaxId: 2190]}
Length = 212
Score = 153 bits (388), Expect = 1e-38
Identities = 66/220 (30%), Positives = 99/220 (45%), Gaps = 19/220 (8%)
Query: 16 IDRSALYGLSDAVVMLKERATAR-FDETVEIAMNLG-IDPRHANQMVRGVVTMPNGTGVN 73
+DR AL AV +E A R F ++ E L ID R ++ V +P+G G
Sbjct: 1 MDREALL---QAVKEARELAKPRNFTQSFEFIATLKEIDMRKPENRIKTEVVLPHGRGKE 57
Query: 74 VRVAVFATSSKADEAREAGADIVGGEDLFEIVK------GGQIDFDRCIATPDMMPLVGR 127
++AV T A +A E G ++ E++ E+ K D IA D+MPL+GR
Sbjct: 58 AKIAVIGTGDLAKQAEELGLTVIRKEEIEELGKNKRKLRKIAKAHDFFIAQADLMPLIGR 117
Query: 128 -LGRILGPRGIMPNLRVGTVTTDVATAVRESKSGAVDFRSEKAGIIHAGIGKVSFENKKI 186
+G ILGPRG MP ++ V K V +K +G +++I
Sbjct: 118 YMGVILGPRGKMPKPV--PANANIKPLVERLKKTVVINTRDK-PYFQVLVGNEKMTDEQI 174
Query: 187 EENVLAFVSAVVKAKPSVAKGDY-VKRVTLSSTMGCGIKV 225
+N+ A ++ V K KG Y +K + TMG +KV
Sbjct: 175 VDNIEAVLNVVAKKYE---KGLYHIKDAYVKLTMGPAVKV 211
>d1mzpa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 217
Score = 152 bits (385), Expect = 2e-38
Identities = 46/220 (20%), Positives = 91/220 (41%), Gaps = 15/220 (6%)
Query: 16 IDRSALYGLSDAVVMLKERATARFDETVEIAMNL-GIDPRHANQMVRGVVTMPNGTGVNV 74
D+ +L + + F ++VEI + GID + + +R +V +P
Sbjct: 3 ADKESLIEALKLALSTEYNVKRNFTQSVEIILTFKGIDMKKGDLKLREIVPLPKQPSKAK 62
Query: 75 RVAVFATSSKADEAREAGADIVGGEDLFEIVKG-------GQIDFDRCIATPDMMPLVGR 127
RV V +S + + A++A +V + + ++G + + + M L GR
Sbjct: 63 RVLVVPSSEQLEYAKKASPKVVITREELQKLQGQKRPVKKLARQNEWFLINQESMALAGR 122
Query: 128 -LGRILGPRGIMPNLRVGTVTTDVATAVRESKSGAVDFRSEKAGIIHAGIGKVSFENKKI 186
LG LGPRG P T D++ + K + ++ + IG + + +
Sbjct: 123 ILGPALGPRGKFPTPL--PNTADISEYINRFKRSVLVKTKDQ-PQVQVFIGTEDMKPEDL 179
Query: 187 EENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTMGCGIKVD 226
EN +A ++A+ ++ + + +TMG +KV
Sbjct: 180 AENAIAVLNAIENKAK---VETNLRNIYVKTTMGKAVKVK 216
>d2feaa1 c.108.1.20 (A:2-227)
2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
phosphatase MtnX {Bacillus subtilis [TaxId: 1423]}
Length = 226
Score = 26.5 bits (57), Expect = 2.3
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 78 VFATSSKADEAREAGADIVGGEDLFEIVK 106
FA +E RE + + +D +EI K
Sbjct: 183 CFARDYLLNECREQNLNHLPYQDFYEIRK 211
>d2ikka1 d.190.1.2 (A:86-238) Hypothetical transcriptional regulator
YurK {Bacillus subtilis [TaxId: 1423]}
Length = 153
Score = 26.3 bits (57), Expect = 2.6
Identities = 6/39 (15%), Positives = 12/39 (30%)
Query: 44 EIAMNLGIDPRHANQMVRGVVTMPNGTGVNVRVAVFATS 82
E + L D A + N + + + T+
Sbjct: 108 EESKYLDCDIGDALFEIDKTAFTSNDQPIYCSLFLMHTN 146
>d1zq1c1 a.182.1.2 (C:457-512) Glutamyl-tRNA(Gln) amidotransferase
subunit E, GatE, C-terminal domain {Pyrococcus abyssi
[TaxId: 29292]}
Length = 56
Score = 25.9 bits (57), Expect = 3.4
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 6/35 (17%)
Query: 22 YGLS--DAVVMLKERATARFDETVEIAMNLGIDPR 54
Y L A ++ + F+E V +G+ P
Sbjct: 14 YKLDRSLAQTLVDDERDELFEELVS----MGVKPS 44
>d1t0fa2 c.52.1.16 (A:7-168) TnsA endonuclease, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 162
Score = 25.6 bits (56), Expect = 3.5
Identities = 15/83 (18%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Query: 3 SKISKRMQQISQGIDRSALYGL--SDAVVMLKERATARFDETVEIAMNLGI---DPRHAN 57
S + R+ + ++ + L +V+ ++E+ +T +IA++ GI R +
Sbjct: 43 SHKTGRVHHLLSDLELAVFLSLEWESSVLDIREQFPLLPSDTRQIAIDSGIKHPVIRGVD 102
Query: 58 QMVRG--VVTMPNGTGVNVRVAV 78
Q++ +V +G + V
Sbjct: 103 QVMSTDFLVDCKDGPFEQFAIQV 125
>d3bofa2 c.1.26.1 (A:1-300) Cobalamin-dependent methionine synthase
MetH, N-terminal domain {Thermotoga maritima [TaxId:
2336]}
Length = 300
Score = 25.7 bits (55), Expect = 3.8
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 85 ADEAREAGADIVGG 98
D E G +I GG
Sbjct: 258 IDSYYELGVNIFGG 271
>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase
(KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}
Length = 226
Score = 24.9 bits (54), Expect = 7.1
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 68 NGTGVNVRVAVFATSSKADEAREAGADIVGGE--DLFEIVKGGQI 110
+ V V++ + S+ EAR AG G D++E + G +
Sbjct: 70 AKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDL 114
>d1nmpa_ c.135.1.1 (A:) Hypothetical protein YbgI {Escherichia
coli [TaxId: 562]}
Length = 247
Score = 24.2 bits (52), Expect = 9.5
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 73 NVRVAVFATSSKADEAREAGADIV 96
+ V A+ + DEA GAD V
Sbjct: 37 KIVTGVTASQALLDEAVRLGADAV 60
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.367
Gapped
Lambda K H
0.267 0.0427 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 815,537
Number of extensions: 37957
Number of successful extensions: 117
Number of sequences better than 10.0: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 17
Length of query: 232
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 150
Effective length of database: 1,281,736
Effective search space: 192260400
Effective search space used: 192260400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.2 bits)