RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780146|ref|YP_003064559.1| 50S ribosomal protein L1 [Candidatus Liberibacter asiaticus str. psy62] (232 letters) >d1ad2a_ e.24.1.1 (A:) Ribosomal protein L1 {Thermus thermophilus [TaxId: 274]} Length = 224 Score = 234 bits (599), Expect = 4e-63 Identities = 100/224 (44%), Positives = 152/224 (67%), Gaps = 1/224 (0%) Query: 7 KRMQQISQGIDRSALYGLSDAVVMLKERATARFDETVEIAMNLGIDPRHANQMVRGVVTM 66 KR + + + +D + +Y + +A ++KE ATA+FDETVE+ LGIDPR ++Q VRG V++ Sbjct: 1 KRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSL 60 Query: 67 PNGTGVNVRVAVFATSSKADEAREAGADIVGGEDLFEIVKGGQIDFDRCIATPDMMPLVG 126 P+G G VRV A K EA EAGAD VGGE++ + + G +DFD +ATPD+M VG Sbjct: 61 PHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVG 120 Query: 127 R-LGRILGPRGIMPNLRVGTVTTDVATAVRESKSGAVDFRSEKAGIIHAGIGKVSFENKK 185 LGRILGPRG++PN + GTV ++ +RE K+G ++FR++K G IHA +GK F +K Sbjct: 121 SKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKACFPPEK 180 Query: 186 IEENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTMGCGIKVDLSS 229 + +N+ AF+ A+ KP AKG +++ V +++TMG ++++ S Sbjct: 181 LADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRINPHS 224 >d1i2aa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 212 Score = 153 bits (388), Expect = 1e-38 Identities = 66/220 (30%), Positives = 99/220 (45%), Gaps = 19/220 (8%) Query: 16 IDRSALYGLSDAVVMLKERATAR-FDETVEIAMNLG-IDPRHANQMVRGVVTMPNGTGVN 73 +DR AL AV +E A R F ++ E L ID R ++ V +P+G G Sbjct: 1 MDREALL---QAVKEARELAKPRNFTQSFEFIATLKEIDMRKPENRIKTEVVLPHGRGKE 57 Query: 74 VRVAVFATSSKADEAREAGADIVGGEDLFEIVK------GGQIDFDRCIATPDMMPLVGR 127 ++AV T A +A E G ++ E++ E+ K D IA D+MPL+GR Sbjct: 58 AKIAVIGTGDLAKQAEELGLTVIRKEEIEELGKNKRKLRKIAKAHDFFIAQADLMPLIGR 117 Query: 128 -LGRILGPRGIMPNLRVGTVTTDVATAVRESKSGAVDFRSEKAGIIHAGIGKVSFENKKI 186 +G ILGPRG MP ++ V K V +K +G +++I Sbjct: 118 YMGVILGPRGKMPKPV--PANANIKPLVERLKKTVVINTRDK-PYFQVLVGNEKMTDEQI 174 Query: 187 EENVLAFVSAVVKAKPSVAKGDY-VKRVTLSSTMGCGIKV 225 +N+ A ++ V K KG Y +K + TMG +KV Sbjct: 175 VDNIEAVLNVVAKKYE---KGLYHIKDAYVKLTMGPAVKV 211 >d1mzpa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 217 Score = 152 bits (385), Expect = 2e-38 Identities = 46/220 (20%), Positives = 91/220 (41%), Gaps = 15/220 (6%) Query: 16 IDRSALYGLSDAVVMLKERATARFDETVEIAMNL-GIDPRHANQMVRGVVTMPNGTGVNV 74 D+ +L + + F ++VEI + GID + + +R +V +P Sbjct: 3 ADKESLIEALKLALSTEYNVKRNFTQSVEIILTFKGIDMKKGDLKLREIVPLPKQPSKAK 62 Query: 75 RVAVFATSSKADEAREAGADIVGGEDLFEIVKG-------GQIDFDRCIATPDMMPLVGR 127 RV V +S + + A++A +V + + ++G + + + M L GR Sbjct: 63 RVLVVPSSEQLEYAKKASPKVVITREELQKLQGQKRPVKKLARQNEWFLINQESMALAGR 122 Query: 128 -LGRILGPRGIMPNLRVGTVTTDVATAVRESKSGAVDFRSEKAGIIHAGIGKVSFENKKI 186 LG LGPRG P T D++ + K + ++ + IG + + + Sbjct: 123 ILGPALGPRGKFPTPL--PNTADISEYINRFKRSVLVKTKDQ-PQVQVFIGTEDMKPEDL 179 Query: 187 EENVLAFVSAVVKAKPSVAKGDYVKRVTLSSTMGCGIKVD 226 EN +A ++A+ ++ + + +TMG +KV Sbjct: 180 AENAIAVLNAIENKAK---VETNLRNIYVKTTMGKAVKVK 216 >d2feaa1 c.108.1.20 (A:2-227) 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase MtnX {Bacillus subtilis [TaxId: 1423]} Length = 226 Score = 26.5 bits (57), Expect = 2.3 Identities = 9/29 (31%), Positives = 14/29 (48%) Query: 78 VFATSSKADEAREAGADIVGGEDLFEIVK 106 FA +E RE + + +D +EI K Sbjct: 183 CFARDYLLNECREQNLNHLPYQDFYEIRK 211 >d2ikka1 d.190.1.2 (A:86-238) Hypothetical transcriptional regulator YurK {Bacillus subtilis [TaxId: 1423]} Length = 153 Score = 26.3 bits (57), Expect = 2.6 Identities = 6/39 (15%), Positives = 12/39 (30%) Query: 44 EIAMNLGIDPRHANQMVRGVVTMPNGTGVNVRVAVFATS 82 E + L D A + N + + + T+ Sbjct: 108 EESKYLDCDIGDALFEIDKTAFTSNDQPIYCSLFLMHTN 146 >d1zq1c1 a.182.1.2 (C:457-512) Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE, C-terminal domain {Pyrococcus abyssi [TaxId: 29292]} Length = 56 Score = 25.9 bits (57), Expect = 3.4 Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 6/35 (17%) Query: 22 YGLS--DAVVMLKERATARFDETVEIAMNLGIDPR 54 Y L A ++ + F+E V +G+ P Sbjct: 14 YKLDRSLAQTLVDDERDELFEELVS----MGVKPS 44 >d1t0fa2 c.52.1.16 (A:7-168) TnsA endonuclease, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 162 Score = 25.6 bits (56), Expect = 3.5 Identities = 15/83 (18%), Positives = 36/83 (43%), Gaps = 7/83 (8%) Query: 3 SKISKRMQQISQGIDRSALYGL--SDAVVMLKERATARFDETVEIAMNLGI---DPRHAN 57 S + R+ + ++ + L +V+ ++E+ +T +IA++ GI R + Sbjct: 43 SHKTGRVHHLLSDLELAVFLSLEWESSVLDIREQFPLLPSDTRQIAIDSGIKHPVIRGVD 102 Query: 58 QMVRG--VVTMPNGTGVNVRVAV 78 Q++ +V +G + V Sbjct: 103 QVMSTDFLVDCKDGPFEQFAIQV 125 >d3bofa2 c.1.26.1 (A:1-300) Cobalamin-dependent methionine synthase MetH, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 300 Score = 25.7 bits (55), Expect = 3.8 Identities = 6/14 (42%), Positives = 7/14 (50%) Query: 85 ADEAREAGADIVGG 98 D E G +I GG Sbjct: 258 IDSYYELGVNIFGG 271 >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 226 Score = 24.9 bits (54), Expect = 7.1 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 2/45 (4%) Query: 68 NGTGVNVRVAVFATSSKADEAREAGADIVGGE--DLFEIVKGGQI 110 + V V++ + S+ EAR AG G D++E + G + Sbjct: 70 AKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDL 114 >d1nmpa_ c.135.1.1 (A:) Hypothetical protein YbgI {Escherichia coli [TaxId: 562]} Length = 247 Score = 24.2 bits (52), Expect = 9.5 Identities = 9/24 (37%), Positives = 12/24 (50%) Query: 73 NVRVAVFATSSKADEAREAGADIV 96 + V A+ + DEA GAD V Sbjct: 37 KIVTGVTASQALLDEAVRLGADAV 60 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.318 0.134 0.367 Gapped Lambda K H 0.267 0.0427 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 815,537 Number of extensions: 37957 Number of successful extensions: 117 Number of sequences better than 10.0: 1 Number of HSP's gapped: 106 Number of HSP's successfully gapped: 17 Length of query: 232 Length of database: 2,407,596 Length adjustment: 82 Effective length of query: 150 Effective length of database: 1,281,736 Effective search space: 192260400 Effective search space used: 192260400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 51 (24.2 bits)