HHsearch results for GI: 254780147 and protein with PDBid: 2zkr_i
>2zkr_i 60S ribosomal protein L12; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 3jyw_K 1s1i_K
Probab=100.00 E-value=0 Score=330.22 Aligned_cols=139 Identities=22% Similarity=0.300 Sum_probs=126.3
Q ss_pred CCCCE----EEEEEEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEECCCCH
Q ss_conf 98423----68999999445566897044686642999899999999997754379751389998389529999859748
Q gi|254780147|r 1 MAKVV----SRIVKLQIESGSAKPSPPVGPAIGQAGIPIMAFCKAFNAATEGMEKGIPIPTTVTCYKDKSFTFTMSQPPV 76 (142)
Q Consensus 1 M~k~v----~~~ikl~v~aG~A~p~PplGp~LG~~Gini~~f~k~fN~~T~~~~~g~~v~V~i~v~~dksf~~~i~~P~~ 76 (142)
|.+++ +++|+|+|+||+|+|+|||||+|||+|||+|+||++||++|++|+ |++|||+|++|+|++|.+.+ ||+
T Consensus 1 m~~k~~~~~v~~ikl~v~~G~A~P~PplGpaLG~~GiNi~~f~k~fN~~T~~~~-G~~VpV~Itv~~d~~~~~~~--p~~ 77 (165)
T 2zkr_i 1 MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWK-GLRITVKLTIQNRQAQIEVV--PSA 77 (165)
T ss_dssp -----------------------------------------------------------------------CCCC--CCH
T ss_pred CCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEEEEECCEEEEEEC--CCC
T ss_conf 969988880699999972575489997652114568789999999999875337-94565899994564799973--880
Q ss_pred HHHHHHHC--CCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEECCEEEEC
Q ss_conf 99999633--7666788999630101259999999999885406787899999977430214528939
Q gi|254780147|r 77 SFFLKKEV--GIKSGSKLPGKESCGSITRENIRKIAQLKMQDMGAIDIEGAMRMVEGSACSMGISVVD 142 (142)
Q Consensus 77 s~likk~~--g~~kgs~~p~~~~~g~it~~~i~eIAk~K~~d~~~~~l~~~vk~VlGTa~SmGi~V~~ 142 (142)
|+++++++ +..+|+..++++++|+||++|+||||+.|++||++++|+++||+|+||||||||+||.
T Consensus 78 s~~~lk~~~~~~~~gs~~~~~e~vG~It~~qv~eIAk~K~~dl~~~~l~~a~k~V~GTArSMGI~VeG 145 (165)
T 2zkr_i 78 SALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDG 145 (165)
T ss_dssp HHHHHHHHTCSSCCSSTTTCSSCSEEECHHHHHHHHHHHTTTCCCSSHHHHHHHHHHHHHHHTEEEC-
T ss_pred HHHHHHHHCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHHHHHHEEHEEEEEEEEC
T ss_conf 69999986677556788875405513539999999995441014799999999855566034689857