HHSEARCH alignment of GI: 254780147 and SCOP domain: d1mmsa1

Alignment
>d1mmsa1 a.4.7.1 (A:71-140) Ribosomal protein L11, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=99.92  E-value=9.9e-26  Score=170.06  Aligned_cols=70  Identities=49%  Similarity=0.797  Sum_probs=68.9

Q ss_pred             CCCCHHHHHHHHCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEECCEEEE
Q ss_conf             5974899999633766678899963010125999999999988540678789999997743021452893
Q gi|254780147|r   72 SQPPVSFFLKKEVGIKSGSKLPGKESCGSITRENIRKIAQLKMQDMGAIDIEGAMRMVEGSACSMGISVV  141 (142)
Q Consensus        72 ~~P~~s~likk~~g~~kgs~~p~~~~~g~it~~~i~eIAk~K~~d~~~~~l~~~vk~VlGTa~SmGi~V~  141 (142)
                      ++||+||||++++|+++||++|+++.+|+||++|+||||+.|++||++.+|+++||+|+||||||||+|+
T Consensus         1 KtPP~s~likkaagi~kGs~~p~~~~vg~it~~qv~eIAk~K~~dl~~~~l~~a~k~v~GtArSMGI~VV   70 (70)
T d1mmsa1           1 KTPPASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKSMGIEVV   70 (70)
T ss_dssp             CCCCHHHHHHHHHTCSSCCSSTTTSCCEEECHHHHHHHHHHHGGGCCCSSHHHHHHHHHHHHTTTTEEEC
T ss_pred             CCCCHHHHHHHHHCCCCCCCCCCCCCCCEECHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCEEEEC
T ss_conf             9898899999997878678999984027176999999999870046888999999999986860744859


SCOP domain information

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Ribosomal protein L11, C-terminal domain
family: Ribosomal protein L11, C-terminal domain
domain: Ribosomal protein L11, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]