RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780147|ref|YP_003064560.1| 50S ribosomal protein L11 [Candidatus Liberibacter asiaticus str. psy62] (142 letters) >d2gycg2 d.47.1.1 (G:2-72) Ribosomal protein L11, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 71 Score = 98.6 bits (246), Expect = 2e-22 Identities = 42/69 (60%), Positives = 51/69 (73%) Query: 3 KVVSRIVKLQIESGSAKPSPPVGPAIGQAGIPIMAFCKAFNAATEGMEKGIPIPTTVTCY 62 K V VKLQ+ +G A PSPPVGPA+GQ G+ IM FCKAFNA T+ +EKG+PIP +T Y Sbjct: 1 KKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITVY 60 Query: 63 KDKSFTFTM 71 D+SFTF Sbjct: 61 ADRSFTFVT 69 >d1hc8a_ a.4.7.1 (A:) Ribosomal protein L11, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 74 Score = 97.0 bits (242), Expect = 5e-22 Identities = 37/73 (50%), Positives = 48/73 (65%) Query: 68 TFTMSQPPVSFFLKKEVGIKSGSKLPGKESCGSITRENIRKIAQLKMQDMGAIDIEGAMR 127 TF PP + LKK GI+SGS P + +I R+ +R+IA+LKM D+ A IE AMR Sbjct: 1 TFITKTPPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPDLNAASIEAAMR 60 Query: 128 MVEGSACSMGISV 140 M+EG+A SMGI V Sbjct: 61 MIEGTARSMGIVV 73 >d3cjsb1 d.47.1.1 (B:1-70) Ribosomal protein L11, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 70 Score = 90.5 bits (225), Expect = 5e-20 Identities = 38/69 (55%), Positives = 46/69 (66%), Gaps = 1/69 (1%) Query: 3 KVVSRIVKLQIESGSAKPSPPVGPAIGQAGIPIMAFCKAFNAATEGMEKGIPIPTTVTCY 62 K V +VKLQ+ +G A P+PPVGPA+GQ G IM F KAFNAAT M I +P +T Y Sbjct: 2 KKVVAVVKLQLPAGKATPAPPVGPALGQHGANIMEFVKAFNAATANMGDAI-VPVEITIY 60 Query: 63 KDKSFTFTM 71 D+SFTF Sbjct: 61 ADRSFTFVT 69 >d1mmsa1 a.4.7.1 (A:71-140) Ribosomal protein L11, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 70 Score = 90.5 bits (225), Expect = 5e-20 Identities = 34/68 (50%), Positives = 47/68 (69%) Query: 74 PPVSFFLKKEVGIKSGSKLPGKESCGSITRENIRKIAQLKMQDMGAIDIEGAMRMVEGSA 133 PP SF LKK GI+ GS P ++ G +TR+ I +IA+ KM D+ A +E AM+++EG+A Sbjct: 3 PPASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTA 62 Query: 134 CSMGISVV 141 SMGI VV Sbjct: 63 KSMGIEVV 70 >d2gycg1 a.4.7.1 (G:73-140) Ribosomal protein L11, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 68 Score = 90.4 bits (225), Expect = 6e-20 Identities = 33/67 (49%), Positives = 42/67 (62%) Query: 74 PPVSFFLKKEVGIKSGSKLPGKESCGSITRENIRKIAQLKMQDMGAIDIEGAMRMVEGSA 133 PP + LKK GIKSGS P K+ G I+R +++IAQ K DM DIE R +EG+A Sbjct: 1 PPAAVLLKKAAGIKSGSGKPNKDKVGKISRAQLQEIAQTKAADMTGADIEAMTRSIEGTA 60 Query: 134 CSMGISV 140 SMG+ V Sbjct: 61 RSMGLVV 67 >d1mmsa2 d.47.1.1 (A:8-70) Ribosomal protein L11, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 63 Score = 90.5 bits (225), Expect = 6e-20 Identities = 34/63 (53%), Positives = 45/63 (71%), Gaps = 1/63 (1%) Query: 9 VKLQIESGSAKPSPPVGPAIGQAGIPIMAFCKAFNAATEGMEKGIPIPTTVTCYKDKSFT 68 +KLQ+ +G A P+PPVGPA+GQ G+ IM FCK FNA T G+ +P +T Y+DKSFT Sbjct: 2 IKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADK-AGMILPVVITVYEDKSFT 60 Query: 69 FTM 71 F + Sbjct: 61 FII 63 >gi|226355464|ref|YP_002785204.1|(72-143:144) putative 50S ribosomal protein L11 [Deinococcus deserti VCD115] gi|226317454|gb|ACO45450.1| putative 50S ribosomal protein L11 [Deinococcus deserti VCD115] E=8e-31 s/c=1.88 id=89% cov=101% Length = 72 Score = 89.3 bits (222), Expect = 1e-19 Identities = 25/68 (36%), Positives = 40/68 (58%) Query: 74 PPVSFFLKKEVGIKSGSKLPGKESCGSITRENIRKIAQLKMQDMGAIDIEGAMRMVEGSA 133 PP+S+ ++K G+ GS P K G + E + +IA+ KM D+ A +E A V G+A Sbjct: 1 PPMSYLIRKAAGLSKGSATPNKAKVGKLNWEQVLEIAKTKMPDLNAGSLEAAANTVAGTA 60 Query: 134 CSMGISVV 141 SMG+++ Sbjct: 61 RSMGVTIE 68 >d3cjrb1 a.4.7.1 (B:71-137) Ribosomal protein L11, C-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 67 Score = 88.5 bits (220), Expect = 2e-19 Identities = 29/65 (44%), Positives = 43/65 (66%) Query: 74 PPVSFFLKKEVGIKSGSKLPGKESCGSITRENIRKIAQLKMQDMGAIDIEGAMRMVEGSA 133 PP S+ ++K G++ G+ PG+E G IT E + +IA+ KM D+ D+E A RM+ GSA Sbjct: 2 PPASYLIRKAAGLEKGAHKPGREKVGRITWEQVLEIAKQKMPDLNTTDLEAAARMIAGSA 61 Query: 134 CSMGI 138 SMG+ Sbjct: 62 RSMGV 66 >d1vqoi1 a.4.7.1 (I:71-140) Ribosomal protein L11, C-terminal domain {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 70 Score = 88.1 bits (219), Expect = 2e-19 Identities = 18/67 (26%), Positives = 40/67 (59%) Query: 74 PPVSFFLKKEVGIKSGSKLPGKESCGSITRENIRKIAQLKMQDMGAIDIEGAMRMVEGSA 133 PP + +K E G ++GS P ++ ++ + +++IA+ K D+ + D+ A + V G+ Sbjct: 3 PPTAELIKDEAGFETGSGEPQEDFVADLSVDQVKQIAEQKHPDLLSYDLTNAAKEVVGTC 62 Query: 134 CSMGISV 140 S+G+++ Sbjct: 63 TSLGVTI 69 >d1wiba_ d.47.1.1 (A:) 60S ribosomal protein L12 {Mouse (Mus musculus) [TaxId: 10090]} Length = 92 Score = 78.3 bits (193), Expect = 2e-16 Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 3/79 (3%) Query: 7 RIVKLQIESGSAKPSPPVGPAIGQAGIPIMAFCKAFNAATEGMEKGIPIPTTVTCYKDKS 66 ++V L+ G + + P IG G+ AT KG+ I +T +++ Sbjct: 17 KVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDW-KGLRITVKLT-IQNRQ 74 Query: 67 FTFTMSQPPVSFFLKKEVG 85 + P S G Sbjct: 75 AQIEVV-PSASALSGPSSG 92 >d1bsma2 d.44.1.1 (A:87-201) Cambialistic superoxide dismutase {Propionibacterium shermanii [TaxId: 1752]} Length = 115 Score = 25.4 bits (55), Expect = 2.1 Identities = 9/35 (25%), Positives = 14/35 (40%) Query: 15 SGSAKPSPPVGPAIGQAGIPIMAFCKAFNAATEGM 49 S +P+ +G AI + F AA G+ Sbjct: 1 SAPERPTDELGAAIDEFFGSFDNMKAQFTAAATGI 35 >d1jlxa2 b.42.3.1 (A:154-299) Agglutinin {Love-lies-bleeding (Amaranthus caudatus) [TaxId: 3567]} Length = 146 Score = 24.8 bits (54), Expect = 3.1 Identities = 6/25 (24%), Positives = 15/25 (60%) Query: 93 PGKESCGSITRENIRKIAQLKMQDM 117 PG +C + +N+ + A L++ ++ Sbjct: 122 PGFINCMNAATQNVDETAILEIIEL 146 >d2r25a1 a.24.10.2 (A:2-167) Phosphorelay protein ypd1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 Score = 24.3 bits (52), Expect = 4.8 Identities = 3/36 (8%), Positives = 16/36 (44%) Query: 102 TRENIRKIAQLKMQDMGAIDIEGAMRMVEGSACSMG 137 + ++ + + +++ ++GS+ ++G Sbjct: 38 AQTTFAQMQRQLDGEKNLTELDNLGHFLKGSSAALG 73 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.317 0.133 0.379 Gapped Lambda K H 0.267 0.0687 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 501,805 Number of extensions: 21394 Number of successful extensions: 50 Number of sequences better than 10.0: 1 Number of HSP's gapped: 46 Number of HSP's successfully gapped: 18 Length of query: 142 Length of database: 2,407,596 Length adjustment: 77 Effective length of query: 65 Effective length of database: 1,350,386 Effective search space: 87775090 Effective search space used: 87775090 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 48 (22.4 bits)