HHsearch alignment for GI: 254780148 and conserved domain: COG5164

>COG5164 SPT5 Transcription elongation factor [Transcription].

Probab=93.94  E-value=0.4  Score=26.74  Aligned_cols=42  Identities=24%  Similarity=0.401  Sum_probs=32.5

Q ss_pred             CCCCCEEEEECCCCCCCEEEEEEECCCCCEEEEEEEECCCEEEE
Q ss_conf             47897799951877897199999828898899999816870478
Q gi|254780148|r  123 FEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPV  166 (177)
Q Consensus       123 ~~~G~~V~I~~Gpf~g~~g~v~~i~~~~~r~~V~v~i~Gr~~~v  166 (177)
T Consensus       352 ~aigktVrIr~g~yKG~lGVVKdv~~~--~arVeLhs~nK~VTI  393 (607)
T COG5164         352 PAIGKTVRIRCGEYKGHLGVVKDVDRN--IARVELHSNNKFVTI  393 (607)
T ss_pred             CCCCCEEEEEECCCCCCCCEEEECCCC--EEEEEEECCCCEEEE
T ss_conf             345846899623645544246643686--489997058816986