HHsearch alignment for GI: 254780148 and conserved domain: PRK05609
>PRK05609 nusG transcription antitermination protein NusG; Validated.
Probab=100.00 E-value=0 Score=323.61 Aligned_cols=176 Identities=51% Similarity=0.914 Sum_probs=166.5
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHCCCHHHCCEEEEECCCCEEEECCEEEEEECCEECEEEEEEEECCCCCHHHHH
Q ss_conf 98861899952885389999999999977981114326631310127720203566412033099999961865224442
Q gi|254780148|r 1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIK 80 (177)
Q Consensus 1 M~~~Wyvv~t~~~~E~~v~~~L~~~~~~~~~~~~~~~v~~P~~~~~~~~~g~~~~~~~plfpgYiFv~~~~~~~~~~~i~ 80 (177)
T Consensus 4 m~k~WYvv~tk~~~E~~v~~~L~~~~~~~~l~~~~~~v~~P~~~~~~~~~gk~~~v~~pLFPGYiFv~~~~~~~~~~~Ir 83 (183)
T PRK05609 4 MKKRWYVVQTYSGYEKKVKENLEERIKTLGMEDLIGEVLVPTEEVVEVKNGKKKVVERKFFPGYVLVKMVMTDESWHLVR 83 (183)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEECCCEEEEEEECCEEEEEEEEEECCEEEEEEECCCHHHHHHH
T ss_conf 57868999977892899999999999865841022389767889999958908999998507279999644751277886
Q ss_pred CCCEEEEEECCC---CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCCEEEEEE
Q ss_conf 033036643278---86100258899999976532221000012347897799951877897199999828898899999
Q gi|254780148|r 81 DTPKVIGFLGTG---ENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV 157 (177)
Q Consensus 81 ~t~gV~~~l~~~---~~P~~i~~~ei~~l~~~~~~~~~~~~~~~~~~~G~~V~I~~Gpf~g~~g~v~~i~~~~~r~~V~v 157 (177)
T Consensus 84 ~t~GV~~~vg~~~~~~~P~pv~~~ei~~i~~~~~~~~~~~~~~~~~~~Gd~V~I~~GPf~g~~g~v~~~d~~k~Rv~V~l 163 (183)
T PRK05609 84 NTPGVTGFVGSHGTRSKPTPLSEKEVERILNRKQEGVEKPKPKVDFEVGEVVRVTDGPFADFNGTVEEVDYEKSKLKVLV 163 (183)
T ss_pred CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCCEEEEEE
T ss_conf 58981499604887787898887999999876651444565343322798999936789996899999838789999999
Q ss_pred EECCCEEEEEECHHHHEEC
Q ss_conf 8168704788567871233
Q gi|254780148|r 158 VIFGRVTPVELAYNQVEKI 176 (177)
Q Consensus 158 ~i~Gr~~~v~l~~~~ieki 176 (177)
T Consensus 164 ~i~Gr~~~vel~~~~veki 182 (183)
T PRK05609 164 SIFGRETPVELEFSQVEKI 182 (183)
T ss_pred EECCCCEEEEECHHHEEEC
T ss_conf 8369961798678997966