HHsearch alignment for GI: 254780148 and conserved domain: PRK05609

>PRK05609 nusG transcription antitermination protein NusG; Validated.
Probab=100.00  E-value=0  Score=323.61  Aligned_cols=176  Identities=51%  Similarity=0.914  Sum_probs=166.5

Q ss_pred             CCCCEEEEEECCCCHHHHHHHHHHHHHHCCCHHHCCEEEEECCCCEEEECCEEEEEECCEECEEEEEEEECCCCCHHHHH
Q ss_conf             98861899952885389999999999977981114326631310127720203566412033099999961865224442
Q gi|254780148|r    1 MTPRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIK   80 (177)
Q Consensus         1 M~~~Wyvv~t~~~~E~~v~~~L~~~~~~~~~~~~~~~v~~P~~~~~~~~~g~~~~~~~plfpgYiFv~~~~~~~~~~~i~   80 (177)
T Consensus         4 m~k~WYvv~tk~~~E~~v~~~L~~~~~~~~l~~~~~~v~~P~~~~~~~~~gk~~~v~~pLFPGYiFv~~~~~~~~~~~Ir   83 (183)
T PRK05609          4 MKKRWYVVQTYSGYEKKVKENLEERIKTLGMEDLIGEVLVPTEEVVEVKNGKKKVVERKFFPGYVLVKMVMTDESWHLVR   83 (183)
T ss_pred             CCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEECCCEEEEEEECCEEEEEEEEEECCEEEEEEECCCHHHHHHH
T ss_conf             57868999977892899999999999865841022389767889999958908999998507279999644751277886


Q ss_pred             CCCEEEEEECCC---CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCCEEEEEE
Q ss_conf             033036643278---86100258899999976532221000012347897799951877897199999828898899999
Q gi|254780148|r   81 DTPKVIGFLGTG---ENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEV  157 (177)
Q Consensus        81 ~t~gV~~~l~~~---~~P~~i~~~ei~~l~~~~~~~~~~~~~~~~~~~G~~V~I~~Gpf~g~~g~v~~i~~~~~r~~V~v  157 (177)
T Consensus        84 ~t~GV~~~vg~~~~~~~P~pv~~~ei~~i~~~~~~~~~~~~~~~~~~~Gd~V~I~~GPf~g~~g~v~~~d~~k~Rv~V~l  163 (183)
T PRK05609         84 NTPGVTGFVGSHGTRSKPTPLSEKEVERILNRKQEGVEKPKPKVDFEVGEVVRVTDGPFADFNGTVEEVDYEKSKLKVLV  163 (183)
T ss_pred             CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCCEEEEEE
T ss_conf             58981499604887787898887999999876651444565343322798999936789996899999838789999999


Q ss_pred             EECCCEEEEEECHHHHEEC
Q ss_conf             8168704788567871233
Q gi|254780148|r  158 VIFGRVTPVELAYNQVEKI  176 (177)
Q Consensus       158 ~i~Gr~~~v~l~~~~ieki  176 (177)
T Consensus       164 ~i~Gr~~~vel~~~~veki  182 (183)
T PRK05609        164 SIFGRETPVELEFSQVEKI  182 (183)
T ss_pred             EECCCCEEEEECHHHEEEC
T ss_conf             8369961798678997966