HHsearch alignment for GI: 254780148 and conserved domain: TIGR01956
>TIGR01956 NusG_myco NusG family protein; InterPro: IPR010216 This entry represents a family of Mycoplasma proteins orthologous to the bacterial transcription termination/antitermination factor NusG. These sequences from Mycoplasma are notably diverged from those in bacterial species, and although NusA and ribosomal protein S10 (NusE) appear to be present, NusB may be absent in Mycoplasmas calling into question whether these species have a functional Nus system, which includes this family as a member.; GO: 0003711 transcription elongation regulator activity, 0006355 regulation of transcription DNA-dependent.
Probab=99.96 E-value=6.7e-29 Score=193.05 Aligned_cols=172 Identities=28% Similarity=0.582 Sum_probs=140.6
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHCCCHHHCCEEEEECCCCEEE---------------------------E---CCEE
Q ss_conf 618999528853899999999999779811143266313101277---------------------------2---0203
Q gi|254780148|r 4 RWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSV---------------------------R---KGRK 53 (177)
Q Consensus 4 ~Wyvv~t~~~~E~~v~~~L~~~~~~~~~~~~~~~v~~P~~~~~~~---------------------------~---~g~~ 53 (177)
T Consensus 1 qWYi~t~~~gnE~~Vi~niK~KV~a~~~~~~~~D~k~~K~r~~~~~~f~~~NP~~~~P~s~kN~~~~kW~t~~vdG~~~Y 80 (335)
T TIGR01956 1 QWYIVTVINGNEDEVIKNIKDKVRALGFEDKILDLKVLKEREVEEKVFDPKNPSNKAPRSMKNTASIKWETLDVDGEGKY 80 (335)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEECCCCEE
T ss_conf 94889840787178999998887542767635525888767899998047888877776533652036999982399715
Q ss_pred ---EEEECCEECEEEEEEEECCCCCHHHHHCCCEEEEEECCCC---CCCCCCHHHHHHHHHH------------------
Q ss_conf ---5664120330999999618652244420330366432788---6100258899999976------------------
Q gi|254780148|r 54 ---VNSERRFFPGYVLIKAVMTDKVYHTIKDTPKVIGFLGTGE---NPSPVTDSEIEHIMNQ------------------ 109 (177)
Q Consensus 54 ---~~~~~plfpgYiFv~~~~~~~~~~~i~~t~gV~~~l~~~~---~P~~i~~~ei~~l~~~------------------ 109 (177)
T Consensus 81 ~K~kI~e~N~~~GYIyIKM~m~~~aWf~iRNT~~vTG~VGSSGkGAkPiP~s~~~~~NLf~~~~~k~I~~n~~krvlv~~ 160 (335)
T TIGR01956 81 KKTKIKEKNKYNGYIYIKMIMTDDAWFLIRNTEGVTGLVGSSGKGAKPIPISDAEAENLFELKMLKGISVNKKKRVLVTQ 160 (335)
T ss_pred EEEEEEECCCCCCEEEEEEEEECCEEEEEECCCCCCEEECCCCCCCCCCCCCHHHHHHCCHHHHHCCCCCCCCCCEEEEC
T ss_conf 57754422658970799999724714798547894367721588852664771124311106661321136666678705
Q ss_pred --------------HHHH---------------------------HH---------------------------------
Q ss_conf --------------5322---------------------------21---------------------------------
Q gi|254780148|r 110 --------------VEAA---------------------------VQ--------------------------------- 115 (177)
Q Consensus 110 --------------~~~~---------------------------~~--------------------------------- 115 (177)
T Consensus 161 ~~~~~~e~~~riefldsGnnf~ek~~~il~~~~~k~~~~~~~seS~e~~~~~~~~~~~~~~~~~nvE~D~~~E~~~~~~~ 240 (335)
T TIGR01956 161 TAIVEMEENKRIEFLDSGNNFDEKDEYILKEKAAKTKAEKKKSESAEKVDSSNVEEVLVEANKANVEVDENVEDVALVKS 240 (335)
T ss_pred CCCCCCHHCCEEEEECCCCCHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEECC
T ss_conf 74236111040424106786112335555443202134542022101245122666765332012112443114445515
Q ss_pred --------------------------------HHCCCCCCCCCCEEEEECCCCCC--CEEEEEEECCC-CCEEEEEEEEC
Q ss_conf --------------------------------00001234789779995187789--71999998288-98899999816
Q gi|254780148|r 116 --------------------------------RPVSSVFFEVGERVCVSDGPFAS--FNGIVKNVDEE-KSRVHVEVVIF 160 (177)
Q Consensus 116 --------------------------------~~~~~~~~~~G~~V~I~~Gpf~g--~~g~v~~i~~~-~~r~~V~v~i~ 160 (177)
T Consensus 241 ~Geveevti~~~VD~~~~~~~~~~~e~~~e~~~~~~~~~F~VG~~V~I~~~~~~gde~~g~I~~i~~~tk~~a~Veve~l 320 (335)
T TIGR01956 241 DGEVEEVTIAEDVDNKVLIEYLEKVELVEEKEKDDNLSKFKVGNLVEILAGSFKGDEIEGKIKKIDQETKDKAIVEVEIL 320 (335)
T ss_pred CCCEEEEEECCCCCCCHHHCCCCCEEEEECCCCHHHHCCCCCCCEEEEEECCCCCCCEEEEEEEHHCCCCCEEEEEEEEE
T ss_conf 88346776213477101101245154531433011200133587889974675586011332120046775689999972
Q ss_pred CCEEEEEECHHHHEE
Q ss_conf 870478856787123
Q gi|254780148|r 161 GRVTPVELAYNQVEK 175 (177)
Q Consensus 161 Gr~~~v~l~~~~iek 175 (177)
T Consensus 321 GK~~~~~l~~~~l~l 335 (335)
T TIGR01956 321 GKLVLVDLNFKELKL 335 (335)
T ss_pred CEEEEEECCHHHHCC
T ss_conf 707896547678079