HHsearch alignment of GI: 254780148 and MMDB domain: 1nz9_A_

>1nz9_A (A:) Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus}
Probab=99.56  E-value=1.1e-14  Score=107.61  Aligned_cols=56  Identities=50%  Similarity=0.841  Sum_probs=53.7

Q ss_pred             CCCCCCCCEEEEECCCCCCCEEEEEEECCCCCEEEEEEEECCCEEEEEECHHHHEE
Q ss_conf             12347897799951877897199999828898899999816870478856787123
Q gi|254780148|r  120 SVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVELAYNQVEK  175 (177)
Q Consensus       120 ~~~~~~G~~V~I~~Gpf~g~~g~v~~i~~~~~r~~V~v~i~Gr~~~v~l~~~~iek  175 (177)
                      ...|++||.|+|++|||+|++|.|.++|.+++|++|++++|||.|+|+++++||||
T Consensus         2 ~~~~~~Gd~V~I~~GpF~g~~G~V~~id~~k~~v~V~i~~fGr~t~vel~~~~ieK   57 (58)
T 1nz9_A            2 QVAFREGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTIFGRETPVELDFSQVVK   57 (58)
T ss_dssp             CCSCCTTCEEEECSGGGTTCEEEEEEEETTTTEEEEEEESSSSEEEEEECGGGEEE
T ss_pred             CCCCCCCCEEEECCCCCCCCEEEEEEEECCCCEEEEEEEECCCCCEEEECHHHEEC
T ss_conf             12315999999924689998899999908899999999824998337359899770