HHsearch alignment of GI: 254780148 and MMDB domain: 2jvv_A_

>2jvv_A (A:) Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A
Probab=100.00  E-value=7.5e-42  Score=270.20  Aligned_cols=174  Identities=45%  Similarity=0.884  Sum_probs=165.7

Q ss_pred             CCEEEEEECCCCHHHHHHHHHHHHHHCCCHHHCCEEEEECCCCEEEECCEEEEEECCEECEEEEEEEECCCCCHHHHHCC
Q ss_conf             86189995288538999999999997798111432663131012772020356641203309999996186522444203
Q gi|254780148|r    3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDT   82 (177)
Q Consensus         3 ~~Wyvv~t~~~~E~~v~~~L~~~~~~~~~~~~~~~v~~P~~~~~~~~~g~~~~~~~plfpgYiFv~~~~~~~~~~~i~~t   82 (177)
                      ++||+++|+||+|.+|+++|++++...++++.++++|+|++..++.++|+++.+.+|+|||||||+++.+++.|..++++
T Consensus         7 ~~WYvl~~~~~~E~~v~~~L~~~~~~~~~~~~g~~~f~P~~~~~~~~~g~~~~~~~plfpgYvFv~~~~~~~~~~~i~~~   86 (181)
T 2jvv_A            7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSV   86 (181)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CEEEEEEEECCCHHHHHHHHHHHHHHHCHHHCCEEEEEEEEEEEEEECCCEEEEEEEEEEEEEEEEEECCCCCEEEEEEC
T ss_conf             74999993689369999999999987060120208886454799990783279888975008999997278735899705


Q ss_pred             CEEEEEECC-CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCCEEEEEEEECC
Q ss_conf             303664327-8861002588999999765322210000123478977999518778971999998288988999998168
Q gi|254780148|r   83 PKVIGFLGT-GENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFG  161 (177)
Q Consensus        83 ~gV~~~l~~-~~~P~~i~~~ei~~l~~~~~~~~~~~~~~~~~~~G~~V~I~~Gpf~g~~g~v~~i~~~~~r~~V~v~i~G  161 (177)
                      +|+++++++ +++|++||+++|+.|+..++...........+.+|+.|+|++|||+|++|.|.++|++++++.|.+++||
T Consensus        87 ~gv~~~v~~~~~~p~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~G~~VrI~~Gpf~G~~g~i~~v~~~~~r~~v~i~~~g  166 (181)
T 2jvv_A           87 PRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFG  166 (181)
T ss_dssp             ------------------------------------CCCCCCCTTEEEEECSSTTTTEEEEEEEEETTTTEEEEEEEETT
T ss_pred             CCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEECCCEEEEECCCCCCCEEEEEEECCCCCEEEEEEEECC
T ss_conf             63688347876688876878964222223431345663210247868999047899957999998388899999999779


Q ss_pred             CEEEEEECHHHHEEC
Q ss_conf             704788567871233
Q gi|254780148|r  162 RVTPVELAYNQVEKI  176 (177)
Q Consensus       162 r~~~v~l~~~~ieki  176 (177)
                      +.++|+++.++|||+
T Consensus       167 ~~~~v~v~~~~ie~v  181 (181)
T 2jvv_A          167 RATPVELDFSQVEKA  181 (181)
T ss_dssp             EEEEEEECTTTEEEC
T ss_pred             CCEEEEECHHHEECC
T ss_conf             956899878998819