HHsearch alignment of GI: 254780148 and MMDB domain: 2oug_A_1-98
>2oug_A (A:1-98) Transcriptional activator RFAH; transcription factor, virulence, transcription pausing, transcription elongation; 2.10A {Escherichia coli}
Probab=99.91 E-value=1.4e-24 Score=166.85 Aligned_cols=96 Identities=19% Similarity=0.327 Sum_probs=91.2
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHCCCHHHCCEEEEECCCCEEEECCEEEEEECCEECEEEEEEEECCCCCHHHHHCC
Q ss_conf 86189995288538999999999997798111432663131012772020356641203309999996186522444203
Q gi|254780148|r 3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDT 82 (177)
Q Consensus 3 ~~Wyvv~t~~~~E~~v~~~L~~~~~~~~~~~~~~~v~~P~~~~~~~~~g~~~~~~~plfpgYiFv~~~~~~~~~~~i~~t 82 (177)
++|||++|++++|++|+++|++ .++++|+|+++..+.++|+++.+.+|+||||||++++++++.|+.++++
T Consensus 2 ~~Wyvl~t~~~~E~~v~~~L~~---------~~ie~f~P~~~~~~~~~g~~~~~~~plfpgyiFv~~~~~~~~~~~i~~~ 72 (98)
T 2oug_A 2 QSWYLLYCKRGQLQRAQEHLER---------QAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEVIHTTTINAT 72 (98)
T ss_dssp CEEEEEEECTTTHHHHHHHHHH---------TTCEEECCEEEEEEESSSSEEEEEEESSTTEEEEEECTTTSCHHHHHHS
T ss_pred CCEEEEEEECCHHHHHHHHHHH---------CCCEEEEEEEEEEEEECCEEEEEEEECCCCEEEEEECCCCCEEEECCCC
T ss_conf 8689999868979999999986---------6998973329988997999999999756748998514442200100125
Q ss_pred CEEEEEECCCCCCCCCCHHHHHHHH
Q ss_conf 3036643278861002588999999
Q gi|254780148|r 83 PKVIGFLGTGENPSPVTDSEIEHIM 107 (177)
Q Consensus 83 ~gV~~~l~~~~~P~~i~~~ei~~l~ 107 (177)
+||+++++++++|++||+++|+.|+
T Consensus 73 ~~v~~~~~~~~~p~~i~d~ei~~l~ 97 (98)
T 2oug_A 73 RGVSHFVRFGASPAIVPSAVIHQLS 97 (98)
T ss_dssp TTEEEECCSSSSSCCCCCHHHHHHH
T ss_pred CCCCEEECCCCCCCCCCHHHHHHHH
T ss_conf 6601220257401369699999987