HHsearch alignment of GI: 254780148 and MMDB domain: 2oug_A_1-98

>2oug_A (A:1-98) Transcriptional activator RFAH; transcription factor, virulence, transcription pausing, transcription elongation; 2.10A {Escherichia coli}
Probab=99.91  E-value=1.4e-24  Score=166.85  Aligned_cols=96  Identities=19%  Similarity=0.327  Sum_probs=91.2

Q ss_pred             CCEEEEEECCCCHHHHHHHHHHHHHHCCCHHHCCEEEEECCCCEEEECCEEEEEECCEECEEEEEEEECCCCCHHHHHCC
Q ss_conf             86189995288538999999999997798111432663131012772020356641203309999996186522444203
Q gi|254780148|r    3 PRWYIVQVYSNCEKKAVESIGGRLSRSGLDHLVTEITIPSERVVSVRKGRKVNSERRFFPGYVLIKAVMTDKVYHTIKDT   82 (177)
Q Consensus         3 ~~Wyvv~t~~~~E~~v~~~L~~~~~~~~~~~~~~~v~~P~~~~~~~~~g~~~~~~~plfpgYiFv~~~~~~~~~~~i~~t   82 (177)
                      ++|||++|++++|++|+++|++         .++++|+|+++..+.++|+++.+.+|+||||||++++++++.|+.++++
T Consensus         2 ~~Wyvl~t~~~~E~~v~~~L~~---------~~ie~f~P~~~~~~~~~g~~~~~~~plfpgyiFv~~~~~~~~~~~i~~~   72 (98)
T 2oug_A            2 QSWYLLYCKRGQLQRAQEHLER---------QAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEVIHTTTINAT   72 (98)
T ss_dssp             CEEEEEEECTTTHHHHHHHHHH---------TTCEEECCEEEEEEESSSSEEEEEEESSTTEEEEEECTTTSCHHHHHHS
T ss_pred             CCEEEEEEECCHHHHHHHHHHH---------CCCEEEEEEEEEEEEECCEEEEEEEECCCCEEEEEECCCCCEEEECCCC
T ss_conf             8689999868979999999986---------6998973329988997999999999756748998514442200100125


Q ss_pred             CEEEEEECCCCCCCCCCHHHHHHHH
Q ss_conf             3036643278861002588999999
Q gi|254780148|r   83 PKVIGFLGTGENPSPVTDSEIEHIM  107 (177)
Q Consensus        83 ~gV~~~l~~~~~P~~i~~~ei~~l~  107 (177)
                      +||+++++++++|++||+++|+.|+
T Consensus        73 ~~v~~~~~~~~~p~~i~d~ei~~l~   97 (98)
T 2oug_A           73 RGVSHFVRFGASPAIVPSAVIHQLS   97 (98)
T ss_dssp             TTEEEECCSSSSSCCCCCHHHHHHH
T ss_pred             CCCCEEECCCCCCCCCCHHHHHHHH
T ss_conf             6601220257401369699999987